Wall clock time and date at job start Tue Mar 31 2020 20:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47012 * 2 1 4 4 N 1.46505 * 109.47006 * 240.00788 * 2 1 3 5 5 C 1.34774 * 119.99867 * 84.99730 * 4 2 1 6 6 O 1.21624 * 120.00482 * 359.97438 * 5 4 2 7 7 C 1.47108 * 119.99656 * 180.28012 * 5 4 2 8 8 C 1.38384 * 127.99713 * 179.43096 * 7 5 4 9 9 C 1.37571 * 111.26360 * 179.88420 * 8 7 5 10 10 N 1.29560 * 117.95044 * 0.42765 * 9 8 7 11 11 S 1.56305 * 110.37668 * 359.75976 * 10 9 8 12 12 C 1.53001 * 109.47295 * 120.00703 * 2 1 3 13 13 C 1.53931 * 113.73183 * 281.86711 * 12 2 1 14 14 N 1.48184 * 86.10128 * 221.95868 * 13 12 2 15 15 C 1.46904 * 111.06942 * 137.52529 * 14 13 12 16 16 C 1.50697 * 109.47238 * 90.56556 * 15 14 13 17 17 O 1.21296 * 119.99895 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00139 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00088 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00348 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00161 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00258 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47277 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47062 * 119.99851 * 23 21 19 26 26 H 1.48503 * 109.46798 * 239.99391 * 23 21 19 27 27 C 1.47956 * 90.79713 * 24.60318 * 14 13 12 28 28 H 1.09002 * 109.47019 * 300.09182 * 1 2 3 29 29 H 1.08996 * 109.47259 * 60.08538 * 1 2 3 30 30 H 1.08997 * 109.47027 * 180.09088 * 1 2 3 31 31 H 0.96998 * 119.99624 * 265.00017 * 4 2 1 32 32 H 1.07999 * 124.36628 * 0.02964 * 8 7 5 33 33 H 1.08006 * 121.02623 * 180.18695 * 9 8 7 34 34 H 1.09002 * 112.93448 * 53.43851 * 12 2 1 35 35 H 1.09001 * 113.76376 * 336.24824 * 13 12 2 36 36 H 1.09005 * 113.75435 * 107.60496 * 13 12 2 37 37 H 1.09001 * 109.47070 * 210.56483 * 15 14 13 38 38 H 1.09000 * 109.46874 * 330.56495 * 15 14 13 39 39 H 0.96997 * 119.99916 * 0.02562 * 18 16 15 40 40 H 0.96994 * 120.00279 * 180.02562 * 22 21 19 41 41 H 1.09005 * 113.75711 * 221.08512 * 27 14 13 42 42 H 1.09001 * 113.76234 * 89.72171 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8572 1.1620 -2.4118 7 6 2.6314 -0.7128 -3.5599 8 6 2.8147 -0.1922 -4.8289 9 6 3.2864 -1.1491 -5.6975 10 7 3.4766 -2.3454 -5.2379 11 16 3.1078 -2.4106 -3.7204 12 6 2.0401 -0.7214 1.2492 13 6 1.9734 0.1324 2.5282 14 7 3.3110 -0.4205 2.8458 15 6 4.2040 0.6234 3.3663 16 6 4.0865 0.6823 4.8675 17 8 3.3327 -0.0710 5.4469 18 7 4.8191 1.5718 5.5664 19 6 4.7126 1.6250 6.9322 20 1 4.0420 0.9538 7.4482 21 6 5.4674 2.5425 7.6527 22 7 6.2838 3.3589 7.0250 23 14 5.3229 2.6146 9.5137 24 1 4.3433 1.5978 9.9739 25 1 6.6480 2.3379 10.1242 26 1 4.8621 3.9658 9.9224 27 6 3.5700 -0.6730 1.4111 28 1 -0.3633 0.5153 0.8892 29 1 -0.3633 0.5125 -0.8907 30 1 -0.3633 -1.0276 0.0016 31 1 2.2490 -1.6316 -1.1528 32 1 2.6155 0.8337 -5.1016 33 1 3.4881 -0.9114 -6.7315 34 1 1.6179 -1.7196 1.3653 35 1 1.9752 1.2061 2.3403 36 1 1.1926 -0.1776 3.2229 37 1 5.2329 0.3917 3.0912 38 1 3.9226 1.5870 2.9417 39 1 5.4216 2.1744 5.1031 40 1 6.8110 3.9992 7.5280 41 1 4.0628 -1.6253 1.2148 42 1 4.0400 0.1646 0.8956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734117657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:17 Heat of formation + Delta-G solvation = -16.593277 kcal Electronic energy + Delta-G solvation = -25812.091826 eV Core-core repulsion = 21919.100940 eV Total energy + Delta-G solvation = -3892.990886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60585 -40.74869 -39.93079 -39.46168 -36.45406 -35.88861 -33.36067 -33.14159 -32.02750 -30.61989 -27.51686 -27.28412 -26.80891 -25.61917 -23.78380 -22.20782 -21.44065 -20.97734 -20.58826 -19.89566 -19.52159 -18.09124 -17.78483 -17.29162 -16.73894 -16.69302 -16.46420 -16.25109 -16.03905 -15.66229 -15.34594 -15.25450 -14.90183 -14.74425 -14.28569 -14.12447 -14.03074 -13.68160 -13.51986 -13.42986 -13.00838 -12.90576 -12.47324 -12.40796 -12.39347 -12.12783 -11.90041 -11.85802 -11.75371 -11.60869 -11.49909 -11.21448 -10.81280 -10.37389 -10.24488 -10.00851 -9.80393 -9.61031 -8.46715 -5.95463 -0.76282 0.24982 0.87447 1.21426 1.36261 1.41107 1.55613 1.89674 2.00597 2.06120 2.28522 2.77865 3.19424 3.33806 3.40787 3.60105 3.68603 4.00826 4.08550 4.12130 4.17947 4.22117 4.33542 4.41064 4.49014 4.51376 4.54036 4.71992 4.75615 4.79488 4.85407 4.88132 4.98601 5.19259 5.30567 5.40327 5.41181 5.45400 5.49217 5.90659 6.09353 6.36138 6.60804 7.02007 7.13343 7.56963 8.13265 8.71047 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024386 B = 0.001899 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.910111 B =14737.728441 C =14988.323013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.076 0.924 4 N -0.702 5.702 5 C 0.599 3.401 6 O -0.562 6.562 7 C -0.290 4.290 8 C -0.108 4.108 9 C 0.061 3.939 10 N -0.546 5.546 11 S 0.456 5.544 12 C -0.100 4.100 13 C 0.015 3.985 14 N -0.481 5.481 15 C 0.023 3.977 16 C 0.443 3.557 17 O -0.617 6.617 18 N -0.578 5.578 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.009 3.991 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.413 0.587 32 H 0.184 0.816 33 H 0.211 0.789 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.277 0.723 41 H 0.107 0.893 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 -8.960 -26.442 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.094 0.906 4 N -0.354 5.354 5 C 0.385 3.615 6 O -0.442 6.442 7 C -0.424 4.424 8 C -0.145 4.145 9 C -0.130 4.130 10 N -0.376 5.376 11 S 0.611 5.389 12 C -0.120 4.120 13 C -0.114 4.114 14 N -0.204 5.204 15 C -0.109 4.109 16 C 0.230 3.770 17 O -0.503 6.503 18 N -0.215 5.215 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.119 4.119 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.249 0.751 32 H 0.201 0.799 33 H 0.228 0.772 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.040 -11.136 -25.117 28.363 hybrid contribution 0.287 2.748 -0.313 2.780 sum -6.753 -8.389 -25.430 27.616 Atomic orbital electron populations 1.22117 0.93855 1.03363 1.02414 1.20974 0.95006 0.96334 0.82306 0.90610 1.45774 1.66455 1.14475 1.08668 1.16918 0.76928 0.85519 0.82167 1.90828 1.51586 1.16660 1.85121 1.26832 1.13184 1.03500 0.98842 1.22384 0.98552 1.03255 0.90274 1.22653 1.00087 0.85891 1.04367 1.72211 1.25168 1.27220 1.13016 1.81468 1.49803 1.03923 1.03684 1.23164 0.95682 1.01067 0.92037 1.23995 0.93211 0.98165 0.96052 1.68379 1.02491 1.33191 1.16337 1.22350 1.00440 0.96347 0.91730 1.20809 0.83215 0.82562 0.90415 1.90481 1.42451 1.44875 1.72463 1.41977 1.39165 1.33458 1.06943 1.19690 1.24348 1.18977 0.83081 0.90393 1.26057 0.95346 0.95117 1.04968 1.69680 1.26579 1.21853 1.38202 0.84862 0.78311 0.78272 0.76837 1.19777 1.19585 1.19590 1.24092 0.96575 1.03355 0.87876 0.90882 0.93159 0.90570 0.75054 0.79881 0.77216 0.85852 0.90953 0.90295 0.87685 0.90591 0.77124 0.91343 0.87507 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.44 71.98 0.68 -1.76 16 2 C 0.16 2.59 2.29 44.99 0.10 2.69 16 3 H 0.08 1.57 7.48 -2.39 -0.02 1.55 16 4 N -0.70 -9.72 4.94 -446.11 -2.20 -11.93 16 5 C 0.60 11.06 7.77 86.57 0.67 11.73 16 6 O -0.56 -14.83 16.62 -4.11 -0.07 -14.90 16 7 C -0.29 -4.20 6.76 24.63 0.17 -4.03 16 8 C -0.11 -1.34 10.40 22.15 0.23 -1.11 16 9 C 0.06 0.66 11.14 84.87 0.95 1.61 16 10 N -0.55 -7.79 11.29 -85.49 -0.97 -8.75 16 11 S 0.46 5.03 22.81 -56.49 -1.29 3.74 16 12 C -0.10 -1.74 3.35 -10.15 -0.03 -1.78 16 13 C 0.02 0.39 7.42 86.36 0.64 1.03 16 14 N -0.48 -14.73 5.65 -911.79 -5.15 -19.88 16 15 C 0.02 0.80 5.28 85.56 0.45 1.25 16 16 C 0.44 21.51 7.83 87.66 0.69 22.19 16 17 O -0.62 -34.97 16.01 -3.08 -0.05 -35.02 16 18 N -0.58 -30.23 5.29 -306.99 -1.62 -31.85 16 19 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 23 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 C 0.01 0.19 7.38 86.41 0.64 0.82 16 28 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.41 3.54 7.98 -92.71 -0.74 2.80 16 32 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.83 7.38 -2.39 -0.02 1.82 16 36 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.11 3.24 8.08 -2.39 -0.02 3.22 16 38 H 0.08 2.34 7.39 -2.39 -0.02 2.33 16 39 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 40 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.08 1.44 7.88 -2.39 -0.02 1.42 16 Total: -1.00 -77.20 375.25 -2.97 -80.17 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.40 Total: 29.07 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.46 Total: 13.97 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -9.66 Total: -122.51 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.12 Total: -49.92 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.29 Total: 3.74 kcal Total: -77.20 -2.97 -80.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734117657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.580 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds