Wall clock time and date at job start Tue Mar 31 2020 20:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47510 * 2 1 4 4 N 1.46507 * 109.47162 * 239.99605 * 2 1 3 5 5 C 1.34776 * 119.99493 * 85.00224 * 4 2 1 6 6 O 1.21633 * 120.00339 * 0.02562 * 5 4 2 7 7 C 1.47270 * 119.99783 * 179.97438 * 5 4 2 8 8 C 1.35204 * 123.14177 * 179.97438 * 7 5 4 9 9 S 1.70943 * 108.82954 * 179.97438 * 8 7 5 10 10 C 1.70770 * 91.12585 * 0.02562 * 9 8 7 11 11 N 1.28644 * 110.55858 * 359.75716 * 10 9 8 12 12 C 1.53000 * 109.46934 * 120.00214 * 2 1 3 13 13 C 1.53939 * 113.73418 * 281.89300 * 12 2 1 14 14 N 1.47957 * 86.18142 * 221.92159 * 13 12 2 15 15 C 1.46903 * 110.99661 * 137.58360 * 14 13 12 16 16 C 1.50699 * 109.47219 * 90.63907 * 15 14 13 17 17 O 1.21294 * 119.99694 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00281 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00333 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00168 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00334 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99616 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00296 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46837 * 60.00029 * 23 21 19 25 25 H 1.48497 * 109.46881 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46862 * 300.00138 * 23 21 19 27 27 C 1.47959 * 90.76345 * 24.69120 * 14 13 12 28 28 H 1.08999 * 109.47279 * 175.63009 * 1 2 3 29 29 H 1.09006 * 109.46666 * 55.63232 * 1 2 3 30 30 H 1.08998 * 109.47261 * 295.63521 * 1 2 3 31 31 H 0.96994 * 120.00105 * 265.00576 * 4 2 1 32 32 H 1.08006 * 125.58779 * 359.93557 * 8 7 5 33 33 H 1.08002 * 124.71726 * 180.02562 * 10 9 8 34 34 H 1.08998 * 112.93933 * 53.60151 * 12 2 1 35 35 H 1.09001 * 113.75543 * 336.24016 * 13 12 2 36 36 H 1.09004 * 113.75457 * 107.60290 * 13 12 2 37 37 H 1.09006 * 109.46728 * 210.63922 * 15 14 13 38 38 H 1.08999 * 109.46885 * 330.63635 * 15 14 13 39 39 H 0.97001 * 119.99765 * 0.02562 * 18 16 15 40 40 H 0.97004 * 119.99670 * 180.02562 * 22 21 19 41 41 H 1.09009 * 113.75573 * 220.99431 * 27 14 13 42 42 H 1.08995 * 113.75857 * 89.63029 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1619 -2.4117 7 6 2.6385 -0.7125 -3.5594 8 6 2.7915 -0.1008 -4.7554 9 16 3.3799 -1.2397 -5.8863 10 6 3.3870 -2.4662 -4.6981 11 7 2.9792 -2.0038 -3.5691 12 6 2.0400 -0.7213 1.2492 13 6 1.9727 0.1324 2.5285 14 7 3.3080 -0.4189 2.8480 15 6 4.1978 0.6266 3.3707 16 6 4.0781 0.6840 4.8718 17 8 3.3252 -0.0715 5.4494 18 7 4.8075 1.5746 5.5725 19 6 4.6990 1.6264 6.9381 20 1 4.0287 0.9538 7.4525 21 6 5.4507 2.5451 7.6605 22 7 6.2653 3.3646 7.0345 23 14 5.3023 2.6162 9.5213 24 1 5.6879 1.3037 10.0990 25 1 6.2022 3.6726 10.0495 26 1 3.8992 2.9282 9.8943 27 6 3.5697 -0.6695 1.4135 28 1 -0.3634 -1.0247 -0.0783 29 1 -0.3633 0.5802 -0.8483 30 1 -0.3634 0.4446 0.9265 31 1 2.2490 -1.6318 -1.1526 32 1 2.5765 0.9372 -4.9626 33 1 3.6956 -3.4869 -4.8696 34 1 1.6200 -1.7206 1.3640 35 1 1.9743 1.2060 2.3404 36 1 1.1918 -0.1779 3.2228 37 1 5.2277 0.3975 3.0967 38 1 3.9148 1.5900 2.9465 39 1 5.4094 2.1790 5.1105 40 1 6.7903 4.0056 7.5388 41 1 4.0649 -1.6206 1.2170 42 1 4.0384 0.1695 0.8995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755376213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:32 Heat of formation + Delta-G solvation = 11.931584 kcal Electronic energy + Delta-G solvation = -25884.974421 eV Core-core repulsion = 21993.220466 eV Total energy + Delta-G solvation = -3891.753955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95370 -40.12694 -38.82402 -37.70262 -35.45729 -33.83212 -31.77852 -31.19655 -30.89776 -29.43146 -26.57866 -25.84076 -25.71687 -24.20458 -23.19731 -21.38017 -20.36852 -19.71298 -19.22698 -19.00112 -17.84069 -17.08847 -16.48408 -16.07049 -15.87957 -15.60012 -15.44905 -14.98816 -14.57141 -14.43540 -14.21265 -13.97519 -13.81954 -13.68795 -13.40943 -12.96403 -12.65657 -12.54615 -12.43250 -12.26366 -11.93098 -11.53491 -11.26751 -11.02416 -10.91782 -10.82497 -10.54312 -10.42655 -10.40623 -10.29239 -10.23209 -10.15939 -9.58004 -9.44474 -9.26914 -8.66501 -8.11607 -7.91069 -6.36883 -3.77546 0.05666 0.75661 1.11516 1.56235 2.89421 3.04344 3.23302 3.28312 3.32967 3.65247 3.93743 3.98752 4.25299 4.36780 4.52622 4.58595 4.72942 4.82953 5.01134 5.07637 5.15894 5.24056 5.29329 5.38018 5.45797 5.49921 5.56519 5.72004 5.73566 5.78464 5.80375 5.97826 6.03702 6.21600 6.31042 6.33737 6.63595 6.85072 7.22602 7.31308 7.59348 7.91817 8.10947 8.67568 9.23285 9.60130 10.12866 10.81013 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.001844 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.392602 B =15177.973020 C =15539.954283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.090 0.910 4 N -0.703 5.703 5 C 0.594 3.406 6 O -0.535 6.535 7 C 0.005 3.995 8 C -0.222 4.222 9 S 0.212 5.788 10 C -0.001 4.001 11 N -0.441 5.441 12 C -0.126 4.126 13 C 0.023 3.977 14 N -0.448 5.448 15 C 0.010 3.990 16 C 0.447 3.553 17 O -0.576 6.576 18 N -0.568 5.568 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.005 3.995 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.410 0.590 32 H 0.190 0.810 33 H 0.206 0.794 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.088 0.912 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 -9.170 -29.079 31.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.108 0.892 4 N -0.353 5.353 5 C 0.377 3.623 6 O -0.412 6.412 7 C -0.130 4.130 8 C -0.365 4.365 9 S 0.466 5.534 10 C -0.301 4.301 11 N -0.156 5.156 12 C -0.145 4.145 13 C -0.106 4.106 14 N -0.170 5.170 15 C -0.122 4.122 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.205 5.205 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.124 4.124 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.245 0.755 32 H 0.207 0.793 33 H 0.223 0.777 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.240 -9.552 -28.668 30.855 hybrid contribution 0.318 1.176 0.909 1.520 sum -5.923 -8.376 -27.759 29.594 Atomic orbital electron populations 1.22146 0.94696 1.02354 1.02816 1.21137 0.94498 0.97166 0.82734 0.89165 1.45863 1.65901 1.14672 1.08882 1.17050 0.77544 0.85729 0.81945 1.90834 1.50795 1.14900 1.84650 1.20539 1.07114 0.89767 0.95582 1.26677 1.05757 1.07228 0.96807 1.83020 1.56027 0.99742 1.14588 1.28490 1.04477 1.05583 0.91537 1.66952 1.12054 1.10890 1.25657 1.23344 0.96557 1.01045 0.93591 1.23925 0.94654 0.97409 0.94618 1.68378 1.01815 1.33480 1.13344 1.22485 0.98739 0.94455 0.96557 1.19692 0.85004 0.84294 0.87794 1.90516 1.41044 1.43477 1.70842 1.41873 1.38638 1.32590 1.07405 1.19643 1.23471 1.18016 0.81596 0.88030 1.25257 0.96191 0.95986 1.00631 1.69611 1.26636 1.21577 1.36707 0.85916 0.78177 0.77891 0.82222 1.19928 1.21017 1.19945 1.23974 0.95552 1.02165 0.90705 0.92256 0.92180 0.90964 0.75450 0.79259 0.77709 0.87608 0.91205 0.88719 0.89514 0.92444 0.77569 0.91896 0.89372 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.46 37.16 0.35 -1.23 16 2 C 0.15 1.58 2.29 -67.93 -0.16 1.43 16 3 H 0.09 1.11 7.48 -51.93 -0.39 0.72 16 4 N -0.70 -7.14 4.94 -54.92 -0.27 -7.41 16 5 C 0.59 6.99 7.76 -12.59 -0.10 6.89 16 6 O -0.53 -7.82 16.37 5.25 0.09 -7.73 16 7 C 0.01 0.05 6.70 -84.53 -0.57 -0.52 16 8 C -0.22 -1.70 10.62 29.65 0.31 -1.39 16 9 S 0.21 0.92 22.97 -107.50 -2.47 -1.55 16 10 C 0.00 -0.01 12.17 51.43 0.63 0.62 16 11 N -0.44 -3.75 10.12 -12.36 -0.13 -3.87 16 12 C -0.13 -1.42 3.35 -89.68 -0.30 -1.72 16 13 C 0.02 0.34 7.33 -2.77 -0.02 0.32 16 14 N -0.45 -7.60 5.65 -239.72 -1.35 -8.95 16 15 C 0.01 0.18 5.28 -4.97 -0.03 0.15 16 16 C 0.45 10.99 7.83 -10.99 -0.09 10.90 16 17 O -0.58 -16.24 16.01 5.55 0.09 -16.15 16 18 N -0.57 -14.86 5.29 -10.97 -0.06 -14.92 16 19 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.11 13.05 55.50 0.72 -24.39 16 23 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.01 0.07 7.39 -2.77 -0.02 0.05 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.68 7.99 -51.93 -0.42 0.26 16 31 H 0.41 3.67 8.12 -40.82 -0.33 3.34 16 32 H 0.19 1.33 8.03 -52.48 -0.42 0.91 16 33 H 0.21 0.37 8.06 -52.49 -0.42 -0.05 16 34 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.97 7.37 -51.93 -0.38 0.59 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 38 H 0.06 0.97 7.38 -51.93 -0.38 0.58 16 39 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 42 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -35.38 375.09 -8.49 -43.87 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.52 Total: 11.67 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.22 Total: 7.31 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -1.08 Total: -59.54 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: 0.17 Total: -23.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.47 Total: -1.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.38 -8.49 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755376213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.802 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds