Wall clock time and date at job start Tue Mar 31 2020 20:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47510 * 2 1 4 4 N 1.46507 * 109.47162 * 239.99605 * 2 1 3 5 5 C 1.34776 * 119.99493 * 85.00224 * 4 2 1 6 6 O 1.21633 * 120.00339 * 0.02562 * 5 4 2 7 7 C 1.47270 * 119.99783 * 179.97438 * 5 4 2 8 8 C 1.35204 * 123.14177 * 179.97438 * 7 5 4 9 9 S 1.70943 * 108.82954 * 179.97438 * 8 7 5 10 10 C 1.70770 * 91.12585 * 0.02562 * 9 8 7 11 11 N 1.28644 * 110.55858 * 359.75716 * 10 9 8 12 12 C 1.53000 * 109.46934 * 120.00214 * 2 1 3 13 13 C 1.53939 * 113.73418 * 281.89300 * 12 2 1 14 14 N 1.47957 * 86.18142 * 221.92159 * 13 12 2 15 15 C 1.46903 * 110.99661 * 137.58360 * 14 13 12 16 16 C 1.50699 * 109.47219 * 90.63907 * 15 14 13 17 17 O 1.21294 * 119.99694 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00281 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00333 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00168 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00334 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99616 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00296 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46837 * 60.00029 * 23 21 19 25 25 H 1.48497 * 109.46881 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46862 * 300.00138 * 23 21 19 27 27 C 1.47959 * 90.76345 * 24.69120 * 14 13 12 28 28 H 1.08999 * 109.47279 * 175.63009 * 1 2 3 29 29 H 1.09006 * 109.46666 * 55.63232 * 1 2 3 30 30 H 1.08998 * 109.47261 * 295.63521 * 1 2 3 31 31 H 0.96994 * 120.00105 * 265.00576 * 4 2 1 32 32 H 1.08006 * 125.58779 * 359.93557 * 8 7 5 33 33 H 1.08002 * 124.71726 * 180.02562 * 10 9 8 34 34 H 1.08998 * 112.93933 * 53.60151 * 12 2 1 35 35 H 1.09001 * 113.75543 * 336.24016 * 13 12 2 36 36 H 1.09004 * 113.75457 * 107.60290 * 13 12 2 37 37 H 1.09006 * 109.46728 * 210.63922 * 15 14 13 38 38 H 1.08999 * 109.46885 * 330.63635 * 15 14 13 39 39 H 0.97001 * 119.99765 * 0.02562 * 18 16 15 40 40 H 0.97004 * 119.99670 * 180.02562 * 22 21 19 41 41 H 1.09009 * 113.75573 * 220.99431 * 27 14 13 42 42 H 1.08995 * 113.75857 * 89.63029 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1619 -2.4117 7 6 2.6385 -0.7125 -3.5594 8 6 2.7915 -0.1008 -4.7554 9 16 3.3799 -1.2397 -5.8863 10 6 3.3870 -2.4662 -4.6981 11 7 2.9792 -2.0038 -3.5691 12 6 2.0400 -0.7213 1.2492 13 6 1.9727 0.1324 2.5285 14 7 3.3080 -0.4189 2.8480 15 6 4.1978 0.6266 3.3707 16 6 4.0781 0.6840 4.8718 17 8 3.3252 -0.0715 5.4494 18 7 4.8075 1.5746 5.5725 19 6 4.6990 1.6264 6.9381 20 1 4.0287 0.9538 7.4525 21 6 5.4507 2.5451 7.6605 22 7 6.2653 3.3646 7.0345 23 14 5.3023 2.6162 9.5213 24 1 5.6879 1.3037 10.0990 25 1 6.2022 3.6726 10.0495 26 1 3.8992 2.9282 9.8943 27 6 3.5697 -0.6695 1.4135 28 1 -0.3634 -1.0247 -0.0783 29 1 -0.3633 0.5802 -0.8483 30 1 -0.3634 0.4446 0.9265 31 1 2.2490 -1.6318 -1.1526 32 1 2.5765 0.9372 -4.9626 33 1 3.6956 -3.4869 -4.8696 34 1 1.6200 -1.7206 1.3640 35 1 1.9743 1.2060 2.3404 36 1 1.1918 -0.1779 3.2228 37 1 5.2277 0.3975 3.0967 38 1 3.9148 1.5900 2.9465 39 1 5.4094 2.1790 5.1105 40 1 6.7903 4.0056 7.5388 41 1 4.0649 -1.6206 1.2170 42 1 4.0384 0.1695 0.8995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755376213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:31 Heat of formation + Delta-G solvation = -17.142132 kcal Electronic energy + Delta-G solvation = -25886.235152 eV Core-core repulsion = 21993.220466 eV Total energy + Delta-G solvation = -3893.014686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78195 -41.13898 -39.85617 -39.36483 -36.46726 -35.89917 -33.32714 -32.67217 -31.57734 -30.64886 -27.51565 -27.25084 -26.73887 -25.63289 -24.07216 -22.39270 -21.24259 -21.00063 -20.44915 -19.92038 -19.74319 -17.97101 -17.71851 -17.23337 -16.77877 -16.71302 -16.51321 -16.29795 -16.18192 -15.68294 -15.42796 -15.08889 -14.94983 -14.70643 -14.29638 -14.16769 -14.05459 -13.72284 -13.51585 -13.44182 -13.04630 -12.93880 -12.87733 -12.47620 -12.44098 -12.14857 -11.97452 -11.88176 -11.64098 -11.49926 -11.24039 -10.84871 -10.71385 -10.39759 -10.28440 -10.02295 -9.91210 -9.64341 -8.47138 -5.96270 -0.45457 0.34001 0.66711 0.94686 1.39082 1.40251 1.51782 2.04440 2.09908 2.27882 2.29497 2.74871 3.11700 3.18660 3.33619 3.43071 3.61977 3.95979 4.07752 4.14467 4.17291 4.19701 4.29582 4.37130 4.38932 4.43881 4.47430 4.51415 4.72765 4.75759 4.81194 4.87083 4.96452 5.15628 5.28003 5.38365 5.40617 5.44147 5.88265 6.06906 6.27053 6.59649 6.60243 7.10256 7.11928 7.55274 8.11630 8.70172 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.001844 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.392602 B =15177.973020 C =15539.954283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.073 0.927 4 N -0.694 5.694 5 C 0.590 3.410 6 O -0.574 6.574 7 C -0.021 4.021 8 C -0.242 4.242 9 S 0.291 5.709 10 C -0.005 4.005 11 N -0.467 5.467 12 C -0.099 4.099 13 C 0.017 3.983 14 N -0.480 5.480 15 C 0.023 3.977 16 C 0.443 3.557 17 O -0.617 6.617 18 N -0.576 5.576 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.995 3.005 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.012 3.988 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.417 0.583 32 H 0.188 0.812 33 H 0.240 0.760 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.278 0.722 41 H 0.102 0.898 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 -10.219 -30.889 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.091 0.909 4 N -0.344 5.344 5 C 0.374 3.626 6 O -0.454 6.454 7 C -0.157 4.157 8 C -0.385 4.385 9 S 0.547 5.453 10 C -0.303 4.303 11 N -0.182 5.182 12 C -0.119 4.119 13 C -0.113 4.113 14 N -0.202 5.202 15 C -0.109 4.109 16 C 0.230 3.770 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.116 4.116 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.254 0.746 32 H 0.205 0.795 33 H 0.256 0.744 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.619 -10.623 -30.517 32.798 hybrid contribution 0.153 1.450 1.327 1.971 sum -5.467 -9.173 -29.190 31.082 Atomic orbital electron populations 1.22097 0.93945 1.02979 1.02498 1.20970 0.94992 0.96213 0.82696 0.90870 1.45767 1.65382 1.14874 1.08371 1.17421 0.76919 0.85411 0.82802 1.90800 1.52691 1.16549 1.85376 1.20344 1.09254 0.90775 0.95301 1.26916 1.05743 1.08217 0.97647 1.82758 1.53492 0.97146 1.11930 1.29121 1.02792 1.07302 0.91122 1.66942 1.13562 1.10324 1.27405 1.23131 0.95640 1.00910 0.92199 1.23961 0.93274 0.98140 0.95907 1.68346 1.02552 1.33247 1.16100 1.22356 1.00400 0.96251 0.91904 1.20754 0.83309 0.82656 0.90288 1.90477 1.42478 1.44795 1.72506 1.41958 1.39230 1.33263 1.06958 1.19629 1.24621 1.19046 0.83047 0.90362 1.26078 0.95293 0.95031 1.05066 1.69677 1.26611 1.21594 1.38382 0.84966 0.78406 0.78214 0.76608 1.19677 1.19396 1.19662 1.24029 0.96637 1.02998 0.87934 0.90994 0.93283 0.90625 0.74556 0.79493 0.74392 0.86301 0.90886 0.90163 0.87754 0.90596 0.77121 0.91299 0.88013 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.46 71.98 0.68 -2.31 16 2 C 0.16 3.23 2.29 44.99 0.10 3.33 16 3 H 0.07 1.81 7.48 -2.39 -0.02 1.79 16 4 N -0.69 -13.67 4.94 -445.93 -2.20 -15.88 16 5 C 0.59 13.94 7.76 86.62 0.67 14.61 16 6 O -0.57 -17.32 16.37 -4.13 -0.07 -17.39 16 7 C -0.02 -0.41 6.70 40.56 0.27 -0.13 16 8 C -0.24 -3.49 10.62 67.12 0.71 -2.78 16 9 S 0.29 1.74 22.97 -56.49 -1.30 0.44 16 10 C 0.00 -0.04 12.17 130.71 1.59 1.56 16 11 N -0.47 -7.20 10.12 -193.03 -1.95 -9.15 16 12 C -0.10 -2.12 3.35 -10.15 -0.03 -2.16 16 13 C 0.02 0.48 7.33 86.41 0.63 1.11 16 14 N -0.48 -15.99 5.65 -912.34 -5.15 -21.15 16 15 C 0.02 0.83 5.28 85.56 0.45 1.28 16 16 C 0.44 22.18 7.83 87.66 0.69 22.86 16 17 O -0.62 -35.83 16.01 -3.07 -0.05 -35.88 16 18 N -0.58 -30.84 5.29 -306.99 -1.62 -32.46 16 19 C -0.33 -19.56 9.68 84.04 0.81 -18.75 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 22 N -0.92 -51.00 13.05 21.66 0.28 -50.72 16 23 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 C 0.01 0.30 7.39 86.41 0.64 0.93 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 1.38 7.99 -2.39 -0.02 1.36 16 31 H 0.42 6.97 8.12 -92.71 -0.75 6.22 16 32 H 0.19 2.63 8.03 -2.91 -0.02 2.60 16 33 H 0.24 -0.07 8.06 -2.91 -0.02 -0.09 16 34 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.07 2.03 7.37 -2.39 -0.02 2.02 16 36 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.10 3.44 8.08 -2.38 -0.02 3.42 16 38 H 0.08 2.50 7.38 -2.39 -0.02 2.48 16 39 H 0.40 20.09 7.90 -92.71 -0.73 19.36 16 40 H 0.28 14.38 8.31 -92.70 -0.77 13.61 16 41 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.07 1.69 7.88 -2.39 -0.02 1.67 16 Total: -1.00 -78.55 375.09 -2.76 -81.31 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -0.41 Total: 35.70 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 7.69 Total: 19.19 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -10.65 Total: -129.36 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -0.12 Total: -53.26 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.30 Total: 0.44 kcal Total: -78.55 -2.76 -81.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755376213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.169 kcal (2) G-P(sol) polarization free energy of solvation -78.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds