Wall clock time and date at job start Tue Mar 31 2020 20:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99588 * 2 1 4 4 C 1.54323 * 109.87858 * 238.89592 * 2 1 3 5 5 H 1.09005 * 110.71479 * 144.24136 * 4 2 1 6 6 N 1.46895 * 110.72404 * 21.14904 * 4 2 1 7 7 C 1.46893 * 111.00318 * 154.99516 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55154 * 102.94521 * 262.77651 * 4 2 1 20 20 C 1.54912 * 101.58200 * 324.50243 * 19 4 2 21 21 N 1.47024 * 109.88017 * 121.09134 * 2 1 3 22 22 C 1.34772 * 125.64979 * 300.51408 * 21 2 1 23 23 O 1.21635 * 120.00328 * 359.97438 * 22 21 2 24 24 C 1.47104 * 120.00220 * 180.02562 * 22 21 2 25 25 C 1.38385 * 127.99819 * 179.97438 * 24 22 21 26 26 C 1.37576 * 111.26137 * 179.97438 * 25 24 22 27 27 N 1.29554 * 117.95192 * 0.02562 * 26 25 24 28 28 S 1.56314 * 110.37874 * 359.69333 * 27 26 25 29 29 H 1.08994 * 109.47480 * 181.09946 * 1 2 3 30 30 H 1.09007 * 109.47156 * 301.10277 * 1 2 3 31 31 H 1.08994 * 109.46968 * 61.09880 * 1 2 3 32 32 H 1.00908 * 110.99391 * 278.94678 * 6 4 2 33 33 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 34 34 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 35 35 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 36 36 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 37 37 H 1.09006 * 111.00323 * 82.57460 * 19 4 2 38 38 H 1.09000 * 111.00217 * 206.42858 * 19 4 2 39 39 H 1.08996 * 110.36455 * 278.17183 * 20 19 4 40 40 H 1.09001 * 110.45915 * 155.89032 * 20 19 4 41 41 H 1.08001 * 124.36683 * 359.96736 * 25 24 22 42 42 H 1.08002 * 121.02830 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 2.9639 -0.2815 -1.6200 6 7 1.0265 -0.8029 -2.2903 7 6 1.6356 -0.9509 -3.6188 8 6 0.5523 -1.0022 -4.6653 9 8 -0.6126 -0.9238 -4.3365 10 7 0.8779 -1.1364 -5.9662 11 6 -0.1076 -1.1826 -6.9181 12 1 -1.1448 -1.1119 -6.6256 13 6 0.2281 -1.3203 -8.2595 14 7 1.4901 -1.4058 -8.6155 15 14 -1.1147 -1.3840 -9.5565 16 1 -0.4990 -1.5329 -10.8996 17 1 -2.0067 -2.5408 -9.2892 18 1 -1.9060 -0.1282 -9.5119 19 6 2.3517 -2.1696 -0.6922 20 6 2.8567 -1.8498 0.7370 21 7 2.0300 -0.7140 1.1840 22 6 1.7742 -0.3852 2.4657 23 8 1.0749 0.5774 2.7187 24 6 2.3416 -1.1896 3.5588 25 6 2.1887 -1.0036 4.9215 26 6 2.8713 -1.9613 5.6354 27 7 3.5296 -2.8587 4.9724 28 16 3.3719 -2.6243 3.4350 29 1 -0.3634 -1.0274 0.0197 30 1 -0.3634 0.5309 0.8800 31 1 -0.3633 0.4966 -0.8996 32 1 0.3656 -1.5440 -2.1109 33 1 2.2161 -1.8729 -3.6517 34 1 2.2905 -0.1019 -3.8149 35 1 1.8094 -1.1994 -6.2290 36 1 1.7244 -1.5023 -9.5519 37 1 1.4450 -2.7738 -0.6601 38 1 3.1269 -2.6620 -1.2794 39 1 3.9090 -1.5668 0.7130 40 1 2.7100 -2.7074 1.3937 41 1 1.6084 -0.2092 5.3671 42 1 2.8595 -1.9645 6.7154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755654660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:53 Heat of formation + Delta-G solvation = -9.220137 kcal Electronic energy + Delta-G solvation = -26282.119849 eV Core-core repulsion = 22389.448687 eV Total energy + Delta-G solvation = -3892.671162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66898 -39.59151 -38.45973 -37.72932 -34.89388 -33.85573 -32.29933 -31.28406 -31.20364 -30.55104 -26.99488 -26.25027 -25.32357 -23.99434 -23.40681 -22.18077 -20.10352 -19.59388 -19.35140 -18.65732 -17.95937 -17.22281 -16.40859 -16.28522 -16.03201 -15.54787 -15.13255 -14.96081 -14.54997 -14.45959 -14.10334 -13.79971 -13.75192 -13.71012 -13.42634 -13.00997 -12.89114 -12.51998 -12.33786 -12.23790 -11.80829 -11.60991 -11.54400 -11.52474 -11.15593 -11.04981 -10.90326 -10.71889 -10.46444 -10.24466 -10.22262 -10.10154 -9.53051 -9.27068 -8.97540 -8.52883 -8.13955 -7.99542 -6.44788 -3.85673 -0.10282 0.85534 1.47184 1.82538 2.48466 2.77744 3.18233 3.24356 3.28653 3.86228 3.89718 3.99990 4.14760 4.28723 4.47394 4.58146 4.65020 4.74648 4.91863 5.00101 5.05227 5.12626 5.21511 5.24135 5.40428 5.41313 5.51317 5.53062 5.69143 5.72959 5.77826 5.91278 6.06625 6.09937 6.21640 6.32305 6.55424 7.06747 7.12836 7.51158 7.52368 7.76398 8.02672 8.57482 9.14679 9.50559 10.01674 10.72709 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.001985 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.819806 B =14105.729463 C =14600.640331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.083 0.917 4 C 0.082 3.918 5 H 0.097 0.903 6 N -0.653 5.653 7 C 0.050 3.950 8 C 0.439 3.561 9 O -0.583 6.583 10 N -0.562 5.562 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.284 1.284 17 H -0.274 1.274 18 H -0.273 1.273 19 C -0.162 4.162 20 C 0.092 3.908 21 N -0.608 5.608 22 C 0.610 3.390 23 O -0.518 6.518 24 C -0.264 4.264 25 C -0.111 4.111 26 C 0.060 3.940 27 N -0.535 5.535 28 S 0.425 5.575 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.355 0.645 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.176 0.824 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -2.608 23.165 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.030 4.030 5 H 0.115 0.885 6 N -0.285 5.285 7 C -0.082 4.082 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.202 4.202 20 C -0.034 4.034 21 N -0.343 5.343 22 C 0.397 3.603 23 O -0.395 6.395 24 C -0.398 4.398 25 C -0.147 4.147 26 C -0.132 4.132 27 N -0.363 5.363 28 S 0.580 5.420 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.176 0.824 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.193 0.807 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.736 -3.031 22.615 24.432 hybrid contribution -0.537 0.150 0.248 0.610 sum 8.199 -2.881 22.863 24.459 Atomic orbital electron populations 1.21963 0.93248 1.02286 1.03652 1.21600 0.96225 0.95597 0.82177 0.89877 1.22635 0.95225 0.93682 0.91417 0.88483 1.60035 1.14922 1.53816 0.99681 1.21727 0.96510 1.00940 0.89062 1.19774 0.89671 0.84612 0.83474 1.90534 1.19857 1.55386 1.80931 1.41851 1.09817 1.63642 1.04596 1.19651 0.90270 1.47159 0.85883 0.87954 1.25265 0.97171 0.97249 0.98228 1.69600 1.16233 1.49965 1.18477 0.85915 0.80196 0.79084 0.79018 1.20986 1.19916 1.19864 1.23580 1.03002 0.99136 0.94500 1.22516 0.95756 0.88716 0.96381 1.48444 1.50401 1.30445 1.04996 1.16276 0.80359 0.83536 0.80103 1.90839 1.37944 1.27835 1.82842 1.26851 1.09286 1.05391 0.98275 1.22138 1.00541 1.00828 0.91163 1.22271 0.96521 0.91444 1.02979 1.72163 1.25561 1.29256 1.09321 1.81980 1.38189 1.17939 1.03900 0.93144 0.92090 0.89037 0.82369 0.93629 0.89408 0.77459 0.91802 0.89775 0.89023 0.89972 0.90829 0.80689 0.80180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.26 37.16 0.31 -1.69 16 2 C 0.15 1.66 3.48 -66.95 -0.23 1.42 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.08 0.84 3.15 -65.88 -0.21 0.64 16 5 H 0.10 0.89 7.82 -51.93 -0.41 0.49 16 6 N -0.65 -9.08 4.39 -106.06 -0.47 -9.55 16 7 C 0.05 0.78 6.03 -4.98 -0.03 0.75 16 8 C 0.44 9.77 7.82 -10.98 -0.09 9.68 16 9 O -0.58 -15.13 15.78 5.55 0.09 -15.04 16 10 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 11 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 12 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 15 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.16 -1.29 6.67 -24.58 -0.16 -1.45 16 20 C 0.09 0.67 5.74 -2.53 -0.01 0.66 16 21 N -0.61 -6.25 3.08 -164.39 -0.51 -6.76 16 22 C 0.61 7.23 7.61 -12.67 -0.10 7.13 16 23 O -0.52 -7.79 15.87 5.25 0.08 -7.71 16 24 C -0.26 -2.53 6.63 -35.93 -0.24 -2.77 16 25 C -0.11 -0.90 10.40 -39.77 -0.41 -1.31 16 26 C 0.06 0.45 11.14 -18.75 -0.21 0.24 16 27 N -0.53 -4.90 11.29 21.63 0.24 -4.65 16 28 S 0.42 3.30 19.33 -107.50 -2.08 1.22 16 29 H 0.05 0.64 7.98 -51.93 -0.41 0.23 16 30 H 0.06 0.86 6.76 -51.92 -0.35 0.51 16 31 H 0.09 1.33 7.40 -51.93 -0.38 0.94 16 32 H 0.36 5.22 7.45 -39.29 -0.29 4.92 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.39 9.07 7.90 -40.82 -0.32 8.74 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.08 0.72 7.77 -51.93 -0.40 0.31 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.47 5.10 -32.56 -0.17 0.31 16 41 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -33.07 361.48 -8.38 -41.44 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.21 Total: 11.39 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.63 Total: 5.49 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.06 Total: -57.92 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.08 Total: 1.22 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.07 -8.38 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755654660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.224 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds