Wall clock time and date at job start Tue Mar 31 2020 20:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99588 * 2 1 4 4 C 1.54323 * 109.87858 * 238.89592 * 2 1 3 5 5 H 1.09005 * 110.71479 * 144.24136 * 4 2 1 6 6 N 1.46895 * 110.72404 * 21.14904 * 4 2 1 7 7 C 1.46893 * 111.00318 * 154.99516 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55154 * 102.94521 * 262.77651 * 4 2 1 20 20 C 1.54912 * 101.58200 * 324.50243 * 19 4 2 21 21 N 1.47024 * 109.88017 * 121.09134 * 2 1 3 22 22 C 1.34772 * 125.64979 * 300.51408 * 21 2 1 23 23 O 1.21635 * 120.00328 * 359.97438 * 22 21 2 24 24 C 1.47104 * 120.00220 * 180.02562 * 22 21 2 25 25 C 1.38385 * 127.99819 * 179.97438 * 24 22 21 26 26 C 1.37576 * 111.26137 * 179.97438 * 25 24 22 27 27 N 1.29554 * 117.95192 * 0.02562 * 26 25 24 28 28 S 1.56314 * 110.37874 * 359.69333 * 27 26 25 29 29 H 1.08994 * 109.47480 * 181.09946 * 1 2 3 30 30 H 1.09007 * 109.47156 * 301.10277 * 1 2 3 31 31 H 1.08994 * 109.46968 * 61.09880 * 1 2 3 32 32 H 1.00908 * 110.99391 * 278.94678 * 6 4 2 33 33 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 34 34 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 35 35 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 36 36 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 37 37 H 1.09006 * 111.00323 * 82.57460 * 19 4 2 38 38 H 1.09000 * 111.00217 * 206.42858 * 19 4 2 39 39 H 1.08996 * 110.36455 * 278.17183 * 20 19 4 40 40 H 1.09001 * 110.45915 * 155.89032 * 20 19 4 41 41 H 1.08001 * 124.36683 * 359.96736 * 25 24 22 42 42 H 1.08002 * 121.02830 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 2.9639 -0.2815 -1.6200 6 7 1.0265 -0.8029 -2.2903 7 6 1.6356 -0.9509 -3.6188 8 6 0.5523 -1.0022 -4.6653 9 8 -0.6126 -0.9238 -4.3365 10 7 0.8779 -1.1364 -5.9662 11 6 -0.1076 -1.1826 -6.9181 12 1 -1.1448 -1.1119 -6.6256 13 6 0.2281 -1.3203 -8.2595 14 7 1.4901 -1.4058 -8.6155 15 14 -1.1147 -1.3840 -9.5565 16 1 -0.4990 -1.5329 -10.8996 17 1 -2.0067 -2.5408 -9.2892 18 1 -1.9060 -0.1282 -9.5119 19 6 2.3517 -2.1696 -0.6922 20 6 2.8567 -1.8498 0.7370 21 7 2.0300 -0.7140 1.1840 22 6 1.7742 -0.3852 2.4657 23 8 1.0749 0.5774 2.7187 24 6 2.3416 -1.1896 3.5588 25 6 2.1887 -1.0036 4.9215 26 6 2.8713 -1.9613 5.6354 27 7 3.5296 -2.8587 4.9724 28 16 3.3719 -2.6243 3.4350 29 1 -0.3634 -1.0274 0.0197 30 1 -0.3634 0.5309 0.8800 31 1 -0.3633 0.4966 -0.8996 32 1 0.3656 -1.5440 -2.1109 33 1 2.2161 -1.8729 -3.6517 34 1 2.2905 -0.1019 -3.8149 35 1 1.8094 -1.1994 -6.2290 36 1 1.7244 -1.5023 -9.5519 37 1 1.4450 -2.7738 -0.6601 38 1 3.1269 -2.6620 -1.2794 39 1 3.9090 -1.5668 0.7130 40 1 2.7100 -2.7074 1.3937 41 1 1.6084 -0.2092 5.3671 42 1 2.8595 -1.9645 6.7154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755654660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:52 Heat of formation + Delta-G solvation = -33.822154 kcal Electronic energy + Delta-G solvation = -26283.186672 eV Core-core repulsion = 22389.448687 eV Total energy + Delta-G solvation = -3893.737986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51932 -40.31484 -39.98496 -38.81812 -36.19533 -35.57564 -33.28740 -33.05245 -32.00644 -31.49896 -28.30548 -27.06931 -26.55908 -25.39486 -24.20192 -22.88362 -21.12907 -20.86860 -20.32796 -19.89903 -19.40949 -18.03115 -17.60564 -17.14160 -17.10805 -16.81882 -16.30747 -16.15045 -15.74944 -15.63920 -15.26209 -15.15596 -14.70950 -14.45786 -14.39924 -14.06609 -13.94386 -13.66316 -13.51887 -13.40917 -13.15728 -12.98862 -12.71475 -12.65533 -12.40237 -12.31971 -12.11480 -11.93148 -11.82642 -11.47154 -11.38820 -11.15812 -10.81409 -10.29872 -9.97569 -9.88187 -9.76551 -9.24472 -8.43869 -5.91743 -0.78296 0.21674 0.86968 1.19889 1.41353 1.43572 1.53663 1.68023 1.96383 2.10964 2.31351 2.92579 3.22602 3.24801 3.41521 3.59690 3.76901 3.99336 4.05107 4.07722 4.12228 4.25116 4.35837 4.44340 4.51293 4.58711 4.63365 4.64567 4.71997 4.77415 4.86903 5.00792 5.05127 5.06315 5.33497 5.42528 5.43999 5.50556 5.92655 6.13769 6.29599 6.39632 6.64360 6.89683 7.16655 7.61564 8.17295 8.73038 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.001985 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.819806 B =14105.729463 C =14600.640331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.147 3.853 3 H 0.076 0.924 4 C 0.087 3.913 5 H 0.118 0.882 6 N -0.669 5.669 7 C 0.067 3.933 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.574 5.574 11 C -0.332 4.332 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.989 3.011 16 H -0.271 1.271 17 H -0.272 1.272 18 H -0.274 1.274 19 C -0.154 4.154 20 C 0.089 3.911 21 N -0.606 5.606 22 C 0.606 3.394 23 O -0.563 6.563 24 C -0.291 4.291 25 C -0.108 4.108 26 C 0.064 3.936 27 N -0.559 5.559 28 S 0.463 5.537 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.349 0.651 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.184 0.816 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 -3.784 23.755 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.043 3.957 3 H 0.094 0.906 4 C -0.024 4.024 5 H 0.136 0.864 6 N -0.301 5.301 7 C -0.065 4.065 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.813 3.187 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.194 4.194 20 C -0.035 4.035 21 N -0.339 5.339 22 C 0.395 3.605 23 O -0.443 6.443 24 C -0.424 4.424 25 C -0.144 4.144 26 C -0.127 4.127 27 N -0.388 5.388 28 S 0.620 5.380 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.169 0.831 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.201 0.799 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.784 -4.236 23.201 25.933 hybrid contribution -1.164 0.511 0.167 1.282 sum 9.620 -3.725 23.367 25.543 Atomic orbital electron populations 1.21803 0.94992 1.01560 1.01758 1.21506 0.94786 0.95890 0.83477 0.90588 1.22647 0.94618 0.95381 0.89735 0.86431 1.59950 1.16220 1.54009 0.99896 1.21576 0.94107 1.03330 0.87467 1.20989 0.90723 0.81932 0.83903 1.90507 1.22427 1.56540 1.81669 1.41918 1.09485 1.64571 1.05153 1.19592 0.90027 1.49209 0.87368 0.90491 1.25979 0.99321 0.96466 0.99472 1.69654 1.17289 1.49941 1.19104 0.85041 0.77772 0.78823 0.77024 1.19576 1.19751 1.19978 1.23554 1.03621 0.97401 0.94817 1.22773 0.96572 0.88058 0.96114 1.48460 1.50238 1.30935 1.04302 1.16612 0.79823 0.83230 0.80881 1.90809 1.40024 1.29844 1.83597 1.26759 1.10838 1.06662 0.98172 1.22378 1.00172 1.01037 0.90840 1.22600 0.95433 0.90433 1.04283 1.72147 1.26370 1.30051 1.10271 1.81686 1.36885 1.16226 1.03228 0.93257 0.93828 0.90938 0.83102 0.90455 0.87410 0.76862 0.91368 0.90464 0.86405 0.87350 0.89732 0.79923 0.77350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.26 71.98 0.59 -3.26 16 2 C 0.15 3.23 3.48 45.34 0.16 3.39 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.09 1.59 3.15 46.10 0.15 1.73 16 5 H 0.12 1.73 7.82 -2.38 -0.02 1.71 16 6 N -0.67 -17.81 4.39 -489.46 -2.15 -19.96 16 7 C 0.07 1.95 6.03 85.56 0.52 2.47 16 8 C 0.44 19.42 7.82 87.66 0.69 20.10 16 9 O -0.62 -33.21 15.78 -3.05 -0.05 -33.26 16 10 N -0.57 -28.05 5.29 -306.98 -1.62 -29.68 16 11 C -0.33 -18.41 9.68 84.04 0.81 -17.59 16 12 H 0.08 4.57 7.16 -2.92 -0.02 4.55 16 13 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 14 N -0.92 -48.34 13.05 21.66 0.28 -48.06 16 15 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 C -0.15 -1.96 6.67 31.99 0.21 -1.74 16 20 C 0.09 1.05 5.74 86.86 0.50 1.55 16 21 N -0.61 -11.77 3.08 -792.25 -2.44 -14.21 16 22 C 0.61 14.21 7.61 86.57 0.66 14.87 16 23 O -0.56 -17.48 15.87 -4.14 -0.07 -17.55 16 24 C -0.29 -5.23 6.63 24.63 0.16 -5.07 16 25 C -0.11 -1.61 10.40 22.15 0.23 -1.38 16 26 C 0.06 0.81 11.14 84.87 0.95 1.76 16 27 N -0.56 -8.98 11.29 -85.47 -0.96 -9.95 16 28 S 0.46 6.15 19.33 -56.49 -1.09 5.06 16 29 H 0.05 1.30 7.98 -2.39 -0.02 1.28 16 30 H 0.04 1.31 6.76 -2.38 -0.02 1.29 16 31 H 0.07 2.22 7.40 -2.39 -0.02 2.20 16 32 H 0.35 10.07 7.45 -89.69 -0.67 9.40 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 2.76 8.08 -2.39 -0.02 2.75 16 35 H 0.40 18.25 7.90 -92.71 -0.73 17.51 16 36 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 37 H 0.08 1.13 7.77 -2.38 -0.02 1.12 16 38 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.84 5.10 -14.70 -0.08 0.77 16 41 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -74.00 361.48 -0.36 -74.36 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.38 Total: 32.29 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.09 Total: 16.61 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.90 Total: -121.85 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.11 Total: -50.81 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 6.15 SS G_CDS: -1.09 Total: 5.06 kcal Total: -74.00 -0.36 -74.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755654660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.541 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds