Wall clock time and date at job start Tue Mar 31 2020 21:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47239 * 2 1 4 4 C 1.53000 * 109.46804 * 120.00626 * 2 1 3 5 5 N 1.46504 * 109.46958 * 174.99727 * 4 2 1 6 6 C 1.34773 * 120.00349 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99714 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00426 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47399 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00253 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99772 * 359.97438 * 10 9 8 12 12 C 1.38795 * 120.00260 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99981 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00217 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47286 * 90.00271 * 14 12 10 16 16 H 1.48504 * 109.47380 * 210.00247 * 14 12 10 17 17 H 1.48504 * 109.47468 * 330.00317 * 14 12 10 18 18 N 1.46508 * 109.46897 * 240.00036 * 2 1 3 19 19 C 1.46500 * 119.99971 * 300.00300 * 18 2 1 20 20 C 1.34773 * 119.99872 * 120.00360 * 18 2 1 21 21 O 1.21519 * 119.99995 * 2.19681 * 20 18 2 22 22 C 1.48151 * 119.99979 * 182.20090 * 20 18 2 23 23 C 1.39449 * 120.09464 * 172.85812 * 22 20 18 24 24 N 1.32079 * 119.86985 * 179.97438 * 23 22 20 25 25 C 1.32137 * 120.07300 * 359.97438 * 24 23 22 26 26 C 1.38733 * 120.19473 * 0.28259 * 25 24 23 27 27 N 1.31802 * 120.12707 * 359.42435 * 26 25 24 28 28 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47059 * 299.99649 * 1 2 3 30 30 H 1.09003 * 109.47179 * 59.99449 * 1 2 3 31 31 H 1.08998 * 109.47047 * 294.98953 * 4 2 1 32 32 H 1.08998 * 109.47345 * 54.99916 * 4 2 1 33 33 H 0.96999 * 119.99978 * 359.97438 * 5 4 2 34 34 H 1.08999 * 109.47089 * 300.00046 * 8 6 5 35 35 H 1.08998 * 109.47051 * 60.00109 * 8 6 5 36 36 H 0.97003 * 120.00045 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.46796 * 263.79816 * 19 18 2 38 38 H 1.08994 * 109.47375 * 23.80175 * 19 18 2 39 39 H 1.08997 * 109.47055 * 143.79894 * 19 18 2 40 40 H 1.07993 * 120.06373 * 359.97438 * 23 22 20 41 41 H 1.07995 * 119.90223 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.93457 * 179.70314 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.1731 -1.4286 2.1910 7 8 3.5700 -1.8828 3.1402 8 6 5.6749 -1.5363 2.1309 9 16 6.2784 -2.3885 3.6093 10 6 8.0101 -2.3759 3.2844 11 1 8.3862 -1.9241 2.3784 12 6 8.8908 -2.9467 4.1927 13 7 8.4324 -3.4978 5.2966 14 14 10.7267 -2.9340 3.8479 15 1 11.3287 -1.7015 4.4169 16 1 11.3558 -4.1258 4.4717 17 1 10.9551 -2.9646 2.3808 18 7 2.0183 -0.6906 -1.1963 19 6 1.6643 -2.0932 -1.4281 20 6 2.7932 -0.0357 -2.0834 21 8 3.1198 1.1154 -1.8713 22 6 3.2467 -0.7190 -3.3171 23 6 3.9213 -0.0029 -4.3055 24 7 4.3240 -0.6167 -5.4034 25 6 4.0888 -1.9069 -5.5650 26 6 3.4133 -2.6210 -4.5860 27 7 3.0129 -2.0176 -3.4847 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1585 2.1369 32 1 1.6053 -1.7199 1.2950 33 1 3.9823 -0.4630 0.4315 34 1 5.9636 -2.0993 1.2433 35 1 6.1093 -0.5376 2.0850 36 1 9.0479 -3.8964 5.9316 37 1 2.4689 -2.7351 -1.0693 38 1 0.7449 -2.3292 -0.8924 39 1 1.5158 -2.2588 -2.4951 40 1 4.1139 1.0514 -4.1733 41 1 4.4197 -2.4061 -6.4636 42 1 3.2190 -3.6743 -4.7245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756004792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:56 Heat of formation + Delta-G solvation = -1.026969 kcal Electronic energy + Delta-G solvation = -26449.144923 eV Core-core repulsion = 22556.829043 eV Total energy + Delta-G solvation = -3892.315880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83683 -40.19053 -38.96252 -36.93836 -35.18061 -33.93136 -32.47542 -32.41493 -31.50679 -29.38519 -27.34436 -26.18755 -25.74135 -25.32538 -25.04057 -22.33663 -20.34566 -19.95459 -18.47510 -17.85010 -17.69246 -17.29714 -16.76287 -16.47495 -16.13044 -15.86671 -15.35120 -15.00981 -14.79338 -14.76552 -14.25689 -14.02903 -13.54829 -13.41041 -13.38825 -13.29534 -13.04213 -12.91401 -12.61296 -12.51427 -12.16860 -11.86534 -11.73717 -11.36801 -11.23349 -11.05313 -11.01185 -10.75240 -10.70659 -9.98291 -9.80777 -9.48264 -9.40135 -9.06018 -9.02228 -8.87471 -8.22691 -6.48646 -6.20657 -3.90956 -0.11490 0.50579 2.25844 2.40264 3.04820 3.11625 3.23265 3.24657 3.28701 3.33098 3.41351 3.68046 3.73393 3.89399 4.15731 4.21624 4.44978 4.60979 4.63350 4.75115 4.89846 4.92084 4.99661 5.14467 5.16724 5.29227 5.36867 5.45930 5.52206 5.63076 5.68828 5.71590 5.82955 5.89088 5.91746 6.16041 6.17320 6.56296 6.61579 6.86195 7.12858 7.60805 7.63257 7.71335 8.36507 8.62186 9.24741 10.86791 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.002908 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.128346 B = 9626.235664 C =11410.050203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.111 0.889 4 C 0.114 3.886 5 N -0.735 5.735 6 C 0.533 3.467 7 O -0.518 6.518 8 C -0.153 4.153 9 S -0.058 6.058 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.586 5.586 19 C 0.072 3.928 20 C 0.572 3.428 21 O -0.527 6.527 22 C 0.029 3.971 23 C 0.112 3.888 24 N -0.439 5.439 25 C 0.074 3.926 26 C 0.045 3.955 27 N -0.402 5.402 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.397 0.603 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.525 4.050 -22.752 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.129 0.871 4 C -0.012 4.012 5 N -0.389 5.389 6 C 0.319 3.681 7 O -0.393 6.393 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.318 5.318 19 C -0.070 4.070 20 C 0.357 3.643 21 O -0.403 6.403 22 C -0.112 4.112 23 C -0.047 4.047 24 N -0.153 5.153 25 C -0.087 4.087 26 C -0.117 4.117 27 N -0.120 5.120 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.200 0.800 41 H 0.194 0.806 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -17.336 3.834 -20.832 27.372 hybrid contribution 2.136 0.440 -1.721 2.779 sum -15.200 4.274 -22.553 27.531 Atomic orbital electron populations 1.22065 0.93296 1.03063 1.03168 1.21527 0.95153 0.98428 0.83142 0.87122 1.21644 0.81366 1.01217 0.96939 1.45919 1.06784 1.61814 1.24424 1.20277 0.89475 0.76735 0.81608 1.90697 1.69867 1.46194 1.32495 1.23523 0.93659 1.05656 1.07529 1.85347 1.04540 1.73111 1.20174 1.22873 0.91587 1.44309 1.09605 0.90988 1.24984 0.99572 0.94527 0.94462 1.70019 1.35374 1.35571 1.09355 0.86172 0.82939 0.77863 0.78552 1.20235 1.20731 1.19725 1.47809 1.49028 1.13437 1.21555 1.22403 1.00641 0.79719 1.04267 1.17731 0.78880 0.85496 0.82152 1.90833 1.56785 1.16536 1.76185 1.22153 1.00214 0.91668 0.97154 1.23857 0.90715 1.02182 0.87974 1.68657 1.15735 1.10081 1.20863 1.24154 0.93674 0.90871 0.99956 1.24051 0.95371 1.02202 0.90082 1.68916 1.13854 1.08479 1.20738 0.91627 0.90523 0.91724 0.90223 0.91130 0.76950 0.89506 0.89273 0.92196 0.91902 0.91615 0.87860 0.80004 0.80642 0.80364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.18 37.16 0.34 -0.71 16 2 C 0.12 1.11 2.79 -67.93 -0.19 0.92 16 3 H 0.11 1.14 6.90 -51.93 -0.36 0.78 16 4 C 0.11 1.32 4.97 -4.04 -0.02 1.30 16 5 N -0.73 -10.67 5.39 -60.30 -0.32 -11.00 16 6 C 0.53 10.34 7.85 -10.99 -0.09 10.25 16 7 O -0.52 -11.90 15.86 5.55 0.09 -11.81 16 8 C -0.15 -3.25 6.16 36.00 0.22 -3.02 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.54 -15.56 9.50 30.94 0.29 -15.26 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 14 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 N -0.59 -5.51 2.24 -174.93 -0.39 -5.91 16 19 C 0.07 0.58 8.45 59.85 0.51 1.08 16 20 C 0.57 6.19 7.36 -12.19 -0.09 6.10 16 21 O -0.53 -6.91 15.70 5.35 0.08 -6.82 16 22 C 0.03 0.27 6.62 -82.84 -0.55 -0.27 16 23 C 0.11 1.02 10.77 -16.99 -0.18 0.84 16 24 N -0.44 -3.79 10.49 -12.71 -0.13 -3.92 16 25 C 0.07 0.43 11.23 -17.24 -0.19 0.23 16 26 C 0.04 0.25 11.22 -17.38 -0.20 0.05 16 27 N -0.40 -3.26 6.23 -9.61 -0.06 -3.32 16 28 H 0.06 0.40 6.67 -51.93 -0.35 0.05 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 33 H 0.40 5.39 7.87 -40.82 -0.32 5.07 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 39 H 0.10 0.77 5.26 -52.00 -0.27 0.49 16 40 H 0.18 1.52 7.67 -52.49 -0.40 1.11 16 41 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 42 H 0.18 0.38 8.06 -52.49 -0.42 -0.04 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -37.01 371.89 -7.24 -44.25 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.37 Total: 2.20 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.24 Total: 3.55 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.18 Total: -49.84 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.17 Total: -18.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.01 -7.24 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756004792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.224 kcal (2) G-P(sol) polarization free energy of solvation -37.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds