Wall clock time and date at job start Tue Mar 31 2020 21:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47239 * 2 1 4 4 C 1.53000 * 109.46804 * 120.00626 * 2 1 3 5 5 N 1.46504 * 109.46958 * 174.99727 * 4 2 1 6 6 C 1.34773 * 120.00349 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99714 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00426 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47399 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00253 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99772 * 359.97438 * 10 9 8 12 12 C 1.38795 * 120.00260 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99981 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00217 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47286 * 90.00271 * 14 12 10 16 16 H 1.48504 * 109.47380 * 210.00247 * 14 12 10 17 17 H 1.48504 * 109.47468 * 330.00317 * 14 12 10 18 18 N 1.46508 * 109.46897 * 240.00036 * 2 1 3 19 19 C 1.46500 * 119.99971 * 300.00300 * 18 2 1 20 20 C 1.34773 * 119.99872 * 120.00360 * 18 2 1 21 21 O 1.21519 * 119.99995 * 2.19681 * 20 18 2 22 22 C 1.48151 * 119.99979 * 182.20090 * 20 18 2 23 23 C 1.39449 * 120.09464 * 172.85812 * 22 20 18 24 24 N 1.32079 * 119.86985 * 179.97438 * 23 22 20 25 25 C 1.32137 * 120.07300 * 359.97438 * 24 23 22 26 26 C 1.38733 * 120.19473 * 0.28259 * 25 24 23 27 27 N 1.31802 * 120.12707 * 359.42435 * 26 25 24 28 28 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47059 * 299.99649 * 1 2 3 30 30 H 1.09003 * 109.47179 * 59.99449 * 1 2 3 31 31 H 1.08998 * 109.47047 * 294.98953 * 4 2 1 32 32 H 1.08998 * 109.47345 * 54.99916 * 4 2 1 33 33 H 0.96999 * 119.99978 * 359.97438 * 5 4 2 34 34 H 1.08999 * 109.47089 * 300.00046 * 8 6 5 35 35 H 1.08998 * 109.47051 * 60.00109 * 8 6 5 36 36 H 0.97003 * 120.00045 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.46796 * 263.79816 * 19 18 2 38 38 H 1.08994 * 109.47375 * 23.80175 * 19 18 2 39 39 H 1.08997 * 109.47055 * 143.79894 * 19 18 2 40 40 H 1.07993 * 120.06373 * 359.97438 * 23 22 20 41 41 H 1.07995 * 119.90223 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.93457 * 179.70314 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.1731 -1.4286 2.1910 7 8 3.5700 -1.8828 3.1402 8 6 5.6749 -1.5363 2.1309 9 16 6.2784 -2.3885 3.6093 10 6 8.0101 -2.3759 3.2844 11 1 8.3862 -1.9241 2.3784 12 6 8.8908 -2.9467 4.1927 13 7 8.4324 -3.4978 5.2966 14 14 10.7267 -2.9340 3.8479 15 1 11.3287 -1.7015 4.4169 16 1 11.3558 -4.1258 4.4717 17 1 10.9551 -2.9646 2.3808 18 7 2.0183 -0.6906 -1.1963 19 6 1.6643 -2.0932 -1.4281 20 6 2.7932 -0.0357 -2.0834 21 8 3.1198 1.1154 -1.8713 22 6 3.2467 -0.7190 -3.3171 23 6 3.9213 -0.0029 -4.3055 24 7 4.3240 -0.6167 -5.4034 25 6 4.0888 -1.9069 -5.5650 26 6 3.4133 -2.6210 -4.5860 27 7 3.0129 -2.0176 -3.4847 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1585 2.1369 32 1 1.6053 -1.7199 1.2950 33 1 3.9823 -0.4630 0.4315 34 1 5.9636 -2.0993 1.2433 35 1 6.1093 -0.5376 2.0850 36 1 9.0479 -3.8964 5.9316 37 1 2.4689 -2.7351 -1.0693 38 1 0.7449 -2.3292 -0.8924 39 1 1.5158 -2.2588 -2.4951 40 1 4.1139 1.0514 -4.1733 41 1 4.4197 -2.4061 -6.4636 42 1 3.2190 -3.6743 -4.7245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756004792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:56 Heat of formation + Delta-G solvation = -28.169813 kcal Electronic energy + Delta-G solvation = -26450.321925 eV Core-core repulsion = 22556.829043 eV Total energy + Delta-G solvation = -3893.492882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44922 -41.09732 -40.30473 -37.86383 -35.90281 -35.02404 -34.61296 -33.22255 -32.25297 -30.88744 -28.03492 -27.76922 -26.92131 -26.41180 -25.61236 -23.06926 -21.80437 -20.79633 -19.82687 -19.12685 -18.34456 -17.96755 -17.82289 -17.58999 -17.30930 -16.90807 -16.76190 -16.55590 -15.97527 -15.74304 -15.46564 -15.02744 -14.85365 -14.55618 -14.33539 -14.13197 -13.98386 -13.92668 -13.73440 -13.48502 -13.20054 -13.09131 -12.91908 -12.88955 -12.61714 -12.44074 -12.05464 -11.89398 -11.75765 -11.51138 -11.17066 -11.04411 -10.55061 -10.33609 -10.20424 -10.05936 -9.78595 -8.70072 -8.37482 -6.15959 -0.70146 -0.03792 1.22684 1.40343 1.43238 1.52868 1.53806 1.54606 1.68367 2.21857 2.25244 2.65999 2.82573 2.96461 3.16978 3.27358 3.37043 3.50709 3.65570 3.87627 4.01165 4.08937 4.16680 4.20699 4.26283 4.28252 4.41928 4.51852 4.57663 4.64829 4.76272 4.83699 4.92433 5.09169 5.21914 5.29639 5.34478 5.38552 5.50583 6.02104 6.11916 6.16774 6.33380 6.57289 6.86260 7.03619 7.12629 8.71800 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.002908 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.128346 B = 9626.235664 C =11410.050203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.127 3.873 3 H 0.100 0.900 4 C 0.112 3.888 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.558 6.558 8 C -0.132 4.132 9 S -0.138 6.138 10 C -0.551 4.551 11 H 0.079 0.921 12 C 0.016 3.984 13 N -0.909 5.909 14 Si 0.998 3.002 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.260 1.260 18 N -0.585 5.585 19 C 0.074 3.926 20 C 0.568 3.432 21 O -0.559 6.559 22 C 0.009 3.991 23 C 0.101 3.899 24 N -0.463 5.463 25 C 0.084 3.916 26 C 0.052 3.948 27 N -0.412 5.412 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.404 0.596 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.272 0.728 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.178 0.822 41 H 0.214 0.786 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 3.420 -25.196 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 H 0.118 0.882 4 C -0.012 4.012 5 N -0.366 5.366 6 C 0.323 3.677 7 O -0.436 6.436 8 C -0.283 4.283 9 S 0.089 5.911 10 C -0.699 4.699 11 H 0.097 0.903 12 C -0.189 4.189 13 N -0.545 5.545 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.184 1.184 18 N -0.315 5.315 19 C -0.067 4.067 20 C 0.355 3.645 21 O -0.438 6.438 22 C -0.129 4.129 23 C -0.058 4.058 24 N -0.177 5.177 25 C -0.078 4.078 26 C -0.111 4.111 27 N -0.131 5.131 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.195 0.805 41 H 0.231 0.769 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.334 3.240 -23.297 29.218 hybrid contribution 2.041 0.588 -1.115 2.399 sum -15.292 3.828 -24.412 29.059 Atomic orbital electron populations 1.22030 0.90847 1.04029 1.03934 1.21476 0.96852 0.97307 0.81940 0.88223 1.21873 0.79086 1.01841 0.98424 1.45738 1.08159 1.59714 1.22986 1.19938 0.88710 0.77035 0.82062 1.90686 1.70247 1.48377 1.34265 1.23366 0.95143 1.05446 1.04357 1.85456 1.05652 1.74862 1.25162 1.23193 0.91847 1.44726 1.10115 0.90330 1.26106 1.05188 0.93653 0.93960 1.70170 1.37445 1.36412 1.10508 0.84962 0.75804 0.78263 0.78999 1.19289 1.19920 1.18420 1.47893 1.48522 1.13933 1.21191 1.22453 1.00676 0.78478 1.05129 1.18000 0.78561 0.85246 0.82709 1.90805 1.58066 1.17902 1.77041 1.21915 1.01695 0.92447 0.96888 1.23808 0.91247 1.02262 0.88450 1.68683 1.16554 1.11710 1.20746 1.24853 0.92056 0.89871 1.01012 1.24741 0.93807 1.03698 0.88834 1.68882 1.14429 1.07756 1.22015 0.90541 0.89450 0.91277 0.90150 0.90763 0.76132 0.87995 0.87975 0.91855 0.93389 0.90019 0.86968 0.80542 0.76904 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.18 71.98 0.66 -1.05 16 2 C 0.13 2.21 2.79 44.99 0.13 2.33 16 3 H 0.10 2.01 6.90 -2.39 -0.02 2.00 16 4 C 0.11 2.50 4.97 86.38 0.43 2.93 16 5 N -0.71 -20.30 5.39 -463.06 -2.49 -22.79 16 6 C 0.54 20.84 7.85 87.66 0.69 21.52 16 7 O -0.56 -26.02 15.86 -3.04 -0.05 -26.07 16 8 C -0.13 -5.59 6.16 71.23 0.44 -5.15 16 9 S -0.14 -7.86 20.57 -56.49 -1.16 -9.02 16 10 C -0.55 -32.25 9.50 67.95 0.65 -31.60 16 11 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 12 C 0.02 0.92 5.49 84.86 0.47 1.39 16 13 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 14 Si 1.00 44.23 29.55 68.60 2.03 46.26 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 N -0.58 -10.46 2.24 -825.66 -1.85 -12.32 16 19 C 0.07 1.08 8.45 127.77 1.08 2.16 16 20 C 0.57 12.23 7.36 86.88 0.64 12.87 16 21 O -0.56 -14.99 15.70 -3.78 -0.06 -15.05 16 22 C 0.01 0.17 6.62 41.89 0.28 0.45 16 23 C 0.10 1.83 10.77 84.95 0.92 2.75 16 24 N -0.46 -7.42 10.49 -194.12 -2.04 -9.45 16 25 C 0.08 0.73 11.23 84.77 0.95 1.68 16 26 C 0.05 0.42 11.22 84.82 0.95 1.37 16 27 N -0.41 -5.98 6.23 -184.32 -1.15 -7.13 16 28 H 0.08 0.73 6.67 -2.38 -0.02 0.71 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.67 7.84 -2.39 -0.02 1.65 16 33 H 0.40 10.70 7.87 -92.71 -0.73 9.97 16 34 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 35 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 0.91 6.44 -2.39 -0.02 0.90 16 39 H 0.11 1.46 5.26 -2.52 -0.01 1.45 16 40 H 0.18 3.16 7.67 -2.91 -0.02 3.14 16 41 H 0.21 0.08 8.06 -2.91 -0.02 0.05 16 42 H 0.22 -0.04 8.06 -2.91 -0.02 -0.07 16 Total: -1.00 -82.71 371.89 2.11 -80.59 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.33 Total: 19.25 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 8.27 Total: 11.65 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -7.25 Total: -107.61 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.11 Total: -41.11 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -82.71 2.11 -80.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756004792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.423 kcal (2) G-P(sol) polarization free energy of solvation -82.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds