Wall clock time and date at job start Tue Mar 31 2020 21:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47519 * 2 1 4 4 C 1.53005 * 109.47370 * 239.99888 * 2 1 3 5 5 N 1.46504 * 109.47229 * 185.00175 * 4 2 1 6 6 C 1.34772 * 119.99977 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99617 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00207 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47293 * 180.02562 * 8 6 5 10 10 C 1.76201 * 99.99773 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00109 * 359.97438 * 10 9 8 12 12 C 1.38796 * 119.99696 * 180.02562 * 10 9 8 13 13 N 1.31629 * 120.00344 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46985 * 59.99696 * 14 12 10 16 16 H 1.48501 * 109.47488 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46829 * 299.99736 * 14 12 10 18 18 N 1.46498 * 109.47341 * 119.99854 * 2 1 3 19 19 C 1.46508 * 119.99856 * 59.99840 * 18 2 1 20 20 C 1.34781 * 120.00285 * 240.00497 * 18 2 1 21 21 O 1.21473 * 119.99743 * 2.34012 * 20 18 2 22 22 C 1.48457 * 120.00071 * 182.34597 * 20 18 2 23 23 C 1.39535 * 120.54749 * 172.92995 * 22 20 18 24 24 C 1.38764 * 118.25928 * 179.97438 * 23 22 20 25 25 N 1.32198 * 119.14733 * 0.02562 * 24 23 22 26 26 C 1.31877 * 121.04006 * 359.97438 * 25 24 23 27 27 N 1.31585 * 121.91996 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47385 * 299.99999 * 1 2 3 30 30 H 1.09001 * 109.46990 * 60.00375 * 1 2 3 31 31 H 1.09007 * 109.46551 * 304.99983 * 4 2 1 32 32 H 1.08997 * 109.47250 * 64.99956 * 4 2 1 33 33 H 0.97000 * 120.00016 * 359.97438 * 5 4 2 34 34 H 1.08996 * 109.47269 * 300.00679 * 8 6 5 35 35 H 1.09006 * 109.46928 * 60.00206 * 8 6 5 36 36 H 0.96999 * 120.00231 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.46601 * 263.84990 * 19 18 2 38 38 H 1.09000 * 109.47092 * 23.85244 * 19 18 2 39 39 H 1.08998 * 109.46766 * 143.85608 * 19 18 2 40 40 H 1.08000 * 120.86812 * 359.97438 * 23 22 20 41 41 H 1.07996 * 120.42262 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.04026 * 180.28281 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1731 -1.4292 -2.1906 7 8 3.5698 -1.8851 -3.1389 8 6 5.6750 -1.5369 -2.1305 9 16 6.2783 -2.3903 -3.6083 10 6 8.0101 -2.3774 -3.2834 11 1 8.3863 -1.9242 -2.3782 12 6 8.8907 -2.9489 -4.1913 13 7 8.4322 -3.5010 -5.2947 14 14 10.7267 -2.9347 -3.8472 15 1 10.9984 -3.6587 -2.5795 16 1 11.4446 -3.6022 -4.9627 17 1 11.1968 -1.5312 -3.7263 18 7 2.0183 -0.6906 1.1962 19 6 1.6644 -2.0932 1.4280 20 6 2.7931 -0.0355 2.0834 21 8 3.0515 1.1391 1.9131 22 6 3.3309 -0.7497 3.2686 23 6 4.2504 -0.1280 4.1143 24 6 4.7217 -0.8392 5.2087 25 7 4.2879 -2.0714 5.4112 26 6 3.4181 -2.6294 4.5918 27 7 2.9441 -1.9933 3.5420 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7199 -1.2951 32 1 1.7517 -0.1584 -2.1370 33 1 3.9825 -0.4622 -0.4319 34 1 6.1093 -0.5383 -2.0852 35 1 5.9637 -2.0992 -1.2424 36 1 9.0476 -3.9007 -5.9291 37 1 0.8001 -2.1451 2.0902 38 1 1.4230 -2.5689 0.4775 39 1 2.5067 -2.6090 1.8890 40 1 4.5864 0.8802 3.9221 41 1 5.4344 -0.3920 5.8857 42 1 3.0819 -3.6364 4.7906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756005381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:49 Heat of formation + Delta-G solvation = -0.778363 kcal Electronic energy + Delta-G solvation = -26467.412976 eV Core-core repulsion = 22575.107877 eV Total energy + Delta-G solvation = -3892.305099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.77572 -40.22679 -39.00710 -36.97412 -34.82487 -33.79055 -32.58990 -32.43079 -31.79735 -29.41465 -27.33349 -26.26410 -25.80934 -25.34057 -24.86120 -22.36391 -20.39209 -20.05723 -18.49845 -17.95746 -17.83788 -16.83029 -16.47787 -16.27033 -16.08065 -15.90055 -15.48155 -15.06010 -14.82987 -14.80519 -14.32698 -14.13850 -14.03714 -13.56295 -13.38309 -13.11409 -12.94827 -12.65814 -12.62167 -12.45802 -12.18250 -11.78513 -11.37681 -11.30754 -11.16426 -11.04741 -11.03952 -10.77186 -10.76375 -10.25355 -9.83105 -9.55016 -9.43954 -9.06663 -9.04845 -8.91016 -8.24805 -6.50248 -6.21706 -3.92381 0.01396 0.41590 2.28738 2.35330 3.02190 3.08585 3.23408 3.27214 3.30502 3.32503 3.38539 3.65259 3.70407 3.93686 4.20440 4.30594 4.43096 4.53860 4.70246 4.88787 4.94863 5.02970 5.06864 5.13331 5.13861 5.30450 5.33660 5.42242 5.53731 5.60040 5.66520 5.72089 5.82440 5.87878 5.94471 6.13270 6.14429 6.31197 6.57450 6.85187 7.40852 7.59079 7.61122 7.67248 8.34925 8.58920 9.23479 10.85688 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.002969 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.020289 B = 9427.902560 C =11269.133580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.120 3.880 3 H 0.110 0.890 4 C 0.112 3.888 5 N -0.735 5.735 6 C 0.533 3.467 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.058 6.058 10 C -0.537 4.537 11 H 0.071 0.929 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 N -0.584 5.584 19 C 0.071 3.929 20 C 0.566 3.434 21 O -0.525 6.525 22 C 0.132 3.868 23 C -0.168 4.168 24 C 0.152 3.848 25 N -0.506 5.506 26 C 0.290 3.710 27 N -0.487 5.487 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.396 0.604 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.269 0.731 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.162 0.838 41 H 0.178 0.822 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.093 6.046 21.797 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.017 3.983 3 H 0.128 0.872 4 C -0.013 4.013 5 N -0.390 5.390 6 C 0.319 3.681 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.169 5.831 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.316 5.316 19 C -0.071 4.071 20 C 0.351 3.649 21 O -0.400 6.400 22 C -0.016 4.016 23 C -0.190 4.190 24 C -0.015 4.015 25 N -0.220 5.220 26 C 0.002 3.998 27 N -0.204 5.204 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -16.272 4.893 20.061 26.290 hybrid contribution 2.361 1.395 1.577 3.163 sum -13.911 6.288 21.638 26.481 Atomic orbital electron populations 1.22039 0.93162 1.03130 1.03116 1.21536 0.95328 0.98357 0.83030 0.87172 1.21666 0.81335 1.01324 0.96985 1.45920 1.06778 1.61845 1.24460 1.20286 0.89490 0.76737 0.81589 1.90702 1.69849 1.46086 1.32500 1.23525 0.93618 1.05657 1.07582 1.85359 1.04532 1.73039 1.20169 1.22830 0.91582 1.44405 1.09687 0.91034 1.24980 0.99565 0.94515 0.94427 1.70004 1.35530 1.35405 1.09367 0.86233 0.82789 0.78501 0.78035 1.19951 1.20765 1.19915 1.47827 1.48526 1.13606 1.21633 1.22421 1.03220 0.79947 1.01522 1.17903 0.78997 0.85970 0.82011 1.90819 1.59132 1.14837 1.75216 1.21580 0.94052 0.90842 0.95079 1.23011 0.97181 1.03447 0.95412 1.23412 0.94824 0.89244 0.94008 1.68371 1.11381 1.11872 1.30346 1.25193 0.88999 1.00320 0.85263 1.68876 1.25659 1.07641 1.18250 0.91631 0.91744 0.90576 0.90997 0.90102 0.77069 0.89280 0.89505 0.92115 0.92245 0.91439 0.87435 0.82076 0.80516 0.78000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.19 37.15 0.34 -0.72 16 2 C 0.12 1.09 2.79 -67.93 -0.19 0.90 16 3 H 0.11 1.12 6.90 -51.93 -0.36 0.77 16 4 C 0.11 1.27 4.94 -4.04 -0.02 1.25 16 5 N -0.74 -10.37 5.39 -60.29 -0.32 -10.70 16 6 C 0.53 10.14 7.85 -10.99 -0.09 10.06 16 7 O -0.52 -11.72 15.86 5.55 0.09 -11.63 16 8 C -0.15 -3.19 6.16 36.00 0.22 -2.97 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 14 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 18 N -0.58 -5.46 2.24 -174.81 -0.39 -5.85 16 19 C 0.07 0.57 8.38 59.85 0.50 1.07 16 20 C 0.57 6.05 7.38 -12.05 -0.09 5.96 16 21 O -0.52 -6.78 15.78 5.39 0.09 -6.70 16 22 C 0.13 1.24 6.65 -82.63 -0.55 0.69 16 23 C -0.17 -1.31 9.72 -38.90 -0.38 -1.69 16 24 C 0.15 1.02 11.31 -17.20 -0.19 0.82 16 25 N -0.51 -4.09 10.42 -14.60 -0.15 -4.24 16 26 C 0.29 2.12 12.27 -92.26 -1.13 0.99 16 27 N -0.49 -4.10 6.23 -11.14 -0.07 -4.17 16 28 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.83 6.87 -51.92 -0.36 0.47 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 5.15 7.87 -40.82 -0.32 4.83 16 34 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 35 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16 39 H 0.11 0.95 5.25 -51.94 -0.27 0.67 16 40 H 0.16 1.10 7.75 -52.49 -0.41 0.69 16 41 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.20 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -36.50 372.15 -8.42 -44.91 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.38 Total: 2.34 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.38 Total: 3.26 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.20 Total: -50.52 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.17 Total: -18.33 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.50 -8.42 -44.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756005381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.135 kcal (2) G-P(sol) polarization free energy of solvation -36.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds