Wall clock time and date at job start Tue Mar 31 2020 20:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21280 * 119.99583 * 2 1 4 4 N 1.34778 * 119.99783 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99565 * 184.63311 * 4 2 1 6 6 H 1.08999 * 109.46668 * 182.17347 * 5 4 2 7 7 C 1.53001 * 109.47325 * 62.17024 * 5 4 2 8 8 C 1.50697 * 109.47050 * 65.00051 * 7 5 4 9 9 O 1.21283 * 120.00171 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99779 * 179.97438 * 8 7 5 11 11 C 1.46502 * 119.99813 * 0.02562 * 10 8 7 12 12 C 1.46499 * 119.99852 * 179.97438 * 10 8 7 13 13 C 1.50700 * 109.47034 * 90.00228 * 12 10 8 14 14 H 1.08000 * 119.99840 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00101 * 179.97438 * 13 12 10 16 16 N 1.31513 * 119.99877 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00321 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46834 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46835 * 119.99791 * 17 15 13 20 20 H 1.48500 * 109.47334 * 240.00282 * 17 15 13 21 21 C 1.50705 * 109.46779 * 302.16610 * 5 4 2 22 22 C 1.38244 * 119.97989 * 140.24879 * 21 5 4 23 23 C 1.38217 * 120.00836 * 179.97438 * 22 21 5 24 24 C 1.38352 * 119.98716 * 0.02562 * 23 22 21 25 25 Cl 1.73602 * 120.01170 * 180.02562 * 24 23 22 26 26 C 1.38351 * 119.97301 * 0.27999 * 24 23 22 27 27 C 1.38210 * 119.98706 * 359.40410 * 26 24 23 28 28 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47038 * 300.00013 * 1 2 3 30 30 H 1.08992 * 109.47163 * 60.00123 * 1 2 3 31 31 H 0.96995 * 120.00148 * 4.62487 * 4 2 1 32 32 H 1.08998 * 109.46598 * 185.00047 * 7 5 4 33 33 H 1.09000 * 109.47026 * 304.99983 * 7 5 4 34 34 H 1.08993 * 109.47188 * 90.00089 * 11 10 8 35 35 H 1.09006 * 109.46634 * 209.99846 * 11 10 8 36 36 H 1.08994 * 109.47025 * 329.99600 * 11 10 8 37 37 H 1.08999 * 109.47079 * 209.99942 * 12 10 8 38 38 H 1.09000 * 109.47416 * 330.00194 * 12 10 8 39 39 H 0.97003 * 120.00346 * 179.97438 * 16 15 13 40 40 H 1.08002 * 119.99646 * 359.97438 * 22 21 5 41 41 H 1.08003 * 120.00571 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00223 * 179.72425 * 26 24 23 43 43 H 1.08004 * 119.99490 * 180.32444 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6423 -1.1693 0.1020 6 1 4.0089 -2.1943 0.0466 7 6 4.0609 -0.5492 1.4366 8 6 3.5807 -1.4211 2.5681 9 8 2.9640 -2.4380 2.3305 10 7 3.8366 -1.0707 3.8441 11 6 4.5812 0.1579 4.1311 12 6 3.3693 -1.9180 4.9441 13 6 4.4277 -2.9378 5.2772 14 1 5.3554 -2.9535 4.7244 15 6 4.2116 -3.8508 6.2875 16 7 3.0821 -3.8313 6.9609 17 14 5.5231 -5.1154 6.7000 18 1 6.6918 -4.9269 5.8034 19 1 5.9501 -4.9433 8.1119 20 1 4.9703 -6.4809 6.5129 21 6 4.2264 -0.3651 -1.0309 22 6 5.3126 0.4595 -0.8044 23 6 5.8491 1.1970 -1.8430 24 6 5.2985 1.1101 -3.1093 25 17 5.9722 2.0356 -4.4145 26 6 4.2075 0.2895 -3.3338 27 6 3.6760 -0.4524 -2.2959 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6983 -2.0058 -0.0686 32 1 5.1473 -0.4694 1.4752 33 1 3.6201 0.4432 1.5303 34 1 3.8841 0.9894 4.2345 35 1 5.1407 0.0354 5.0585 36 1 5.2727 0.3629 3.3139 37 1 3.1718 -1.3000 5.8200 38 1 2.4538 -2.4287 4.6458 39 1 2.9299 -4.4738 7.6715 40 1 5.7421 0.5275 0.1842 41 1 6.6980 1.8409 -1.6662 42 1 3.7745 0.2248 -4.3211 43 1 2.8275 -1.0971 -2.4722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067509399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:28 Heat of formation + Delta-G solvation = -71.872464 kcal Electronic energy + Delta-G solvation = -27200.835374 eV Core-core repulsion = 23271.110946 eV Total energy + Delta-G solvation = -3929.724428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67070 -40.20995 -39.71402 -37.52282 -36.67843 -35.93265 -34.72911 -33.27290 -32.00344 -30.89773 -30.24106 -29.16786 -27.29355 -25.86675 -24.46198 -23.56053 -22.53129 -20.98649 -19.78569 -18.73049 -18.52420 -18.36870 -17.45593 -17.29737 -16.88289 -16.46544 -16.33212 -15.86230 -15.84209 -15.68732 -14.79225 -14.74613 -14.46851 -14.36589 -14.27274 -13.96525 -13.78584 -13.45126 -13.39952 -13.32545 -13.11897 -13.00568 -12.91058 -12.71145 -12.54667 -12.43613 -12.31844 -12.20457 -12.14996 -11.72273 -11.65801 -10.81478 -10.64438 -10.52693 -10.10629 -9.95522 -9.45259 -9.39051 -8.21586 -6.36312 0.16859 0.37566 1.17220 1.37871 1.39421 1.51459 1.72927 1.87976 2.30090 2.35620 2.46033 2.75014 3.08078 3.52514 3.71030 3.87111 3.96248 4.03009 4.09180 4.26829 4.32991 4.44160 4.49216 4.51284 4.58679 4.67254 4.68982 4.75181 4.86127 4.93238 5.00708 5.03053 5.07518 5.23167 5.25799 5.28147 5.42397 5.57321 5.64454 5.84223 5.85061 6.06976 6.67298 6.71118 6.81025 7.29306 7.34342 7.50080 8.85515 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.002799 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.670051 B =10001.988224 C =10880.998536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.504 3.496 3 O -0.574 6.574 4 N -0.708 5.708 5 C 0.205 3.795 6 H 0.108 0.892 7 C -0.144 4.144 8 C 0.501 3.499 9 O -0.581 6.581 10 N -0.613 5.613 11 C 0.079 3.921 12 C 0.261 3.739 13 C -0.538 4.538 14 H 0.054 0.946 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.281 1.281 21 C -0.074 4.074 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.049 4.049 25 Cl -0.075 7.075 26 C -0.113 4.113 27 C -0.099 4.099 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.414 0.586 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.017 0.983 38 H 0.001 0.999 39 H 0.267 0.733 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 10.325 -20.328 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.293 3.707 3 O -0.454 6.454 4 N -0.359 5.359 5 C 0.099 3.901 6 H 0.126 0.874 7 C -0.184 4.184 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.344 5.344 11 C -0.064 4.064 12 C 0.140 3.860 13 C -0.577 4.577 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.207 1.207 21 C -0.075 4.075 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.076 4.076 25 Cl -0.046 7.046 26 C -0.132 4.132 27 C -0.117 4.117 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.250 0.750 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.035 0.965 38 H 0.019 0.981 39 H 0.075 0.925 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.860 10.551 -20.378 23.023 hybrid contribution 0.154 -1.026 0.661 1.230 sum 2.014 9.526 -19.717 21.990 Atomic orbital electron populations 1.21868 0.89683 1.05665 1.05522 1.21338 0.91781 0.83166 0.74409 1.90672 1.71355 1.32295 1.51061 1.46022 1.06447 1.09476 1.73946 1.19420 0.80954 0.99488 0.90220 0.87405 1.22192 1.04106 1.00325 0.91768 1.21044 0.79690 0.86016 0.84229 1.90590 1.43112 1.28014 1.84423 1.48161 1.54996 1.24847 1.06433 1.21882 0.96306 0.85034 1.03137 1.18726 0.94263 0.89123 0.83936 1.21715 1.02633 1.15997 1.17323 0.92737 1.25854 0.97959 0.99532 0.95834 1.70059 1.25862 1.37762 1.23254 0.85370 0.78884 0.78299 0.78264 1.18974 1.19756 1.20702 1.20082 0.95863 0.97144 0.94454 1.21259 0.95984 0.95345 0.99811 1.21216 1.00903 1.00127 0.90765 1.21069 0.98049 0.98542 0.89903 1.98358 1.84838 1.72723 1.48698 1.21161 0.95268 0.96177 1.00597 1.20965 0.99908 0.99291 0.91557 0.88799 0.89172 0.87457 0.74965 0.85972 0.87593 0.92106 0.91386 0.88942 0.96505 0.98077 0.92454 0.83580 0.83489 0.83719 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 10.39 71.24 0.74 -2.16 16 2 C 0.50 12.35 6.97 87.66 0.61 12.96 16 3 O -0.57 -17.58 14.38 -3.03 -0.04 -17.63 16 4 N -0.71 -16.45 3.72 -446.08 -1.66 -18.11 16 5 C 0.20 5.03 2.56 44.25 0.11 5.14 16 6 H 0.11 2.70 7.96 -2.39 -0.02 2.68 16 7 C -0.14 -3.94 2.82 29.85 0.08 -3.86 16 8 C 0.50 19.47 7.53 87.66 0.66 20.13 16 9 O -0.58 -26.55 14.93 -3.04 -0.05 -26.60 16 10 N -0.61 -25.49 2.86 -851.14 -2.43 -27.92 16 11 C 0.08 2.40 10.24 127.77 1.31 3.71 16 12 C 0.26 13.86 5.16 85.63 0.44 14.31 16 13 C -0.54 -30.37 9.39 25.60 0.24 -30.13 16 14 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 17 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 C -0.07 -1.65 4.03 -19.86 -0.08 -1.73 16 22 C -0.11 -2.19 9.11 22.27 0.20 -1.98 16 23 C -0.11 -2.19 9.83 22.29 0.22 -1.97 16 24 C -0.05 -0.99 6.32 22.32 0.14 -0.85 16 25 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 26 C -0.11 -2.20 9.83 22.29 0.22 -1.98 16 27 C -0.10 -2.00 8.93 22.26 0.20 -1.81 16 28 H 0.09 1.27 7.92 -2.39 -0.02 1.25 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.41 8.48 8.67 -92.71 -0.80 7.68 16 32 H 0.12 2.72 5.60 -2.39 -0.01 2.70 16 33 H 0.11 3.03 6.34 -2.39 -0.02 3.02 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.15 8.07 -2.38 -0.02 2.13 16 36 H 0.09 2.13 6.44 -2.39 -0.02 2.12 16 37 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 38 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 39 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.15 2.55 5.86 -2.91 -0.02 2.54 16 41 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 43 H 0.14 2.38 7.71 -2.91 -0.02 2.36 16 Total: -1.00 -74.33 374.31 3.86 -70.47 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.24 Total: 19.73 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.56 Total: 10.64 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -3.81 Total: -101.27 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -0.09 Total: -44.23 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -74.33 3.86 -70.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.402 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds