Wall clock time and date at job start Tue Mar 31 2020 20:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47197 * 2 1 4 4 C 1.37088 * 119.99799 * 264.76916 * 3 2 1 5 5 H 1.08009 * 120.00015 * 138.85008 * 4 3 2 6 6 C 1.38947 * 120.00253 * 318.84895 * 4 3 2 7 7 N 1.31414 * 119.99931 * 341.83508 * 6 4 3 8 8 Si 1.86799 * 120.00294 * 161.83287 * 6 4 3 9 9 H 1.48506 * 109.47172 * 60.00127 * 8 6 4 10 10 H 1.48502 * 109.47137 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47404 * 300.00336 * 8 6 4 12 12 C 1.34776 * 120.00069 * 84.76175 * 3 2 1 13 13 O 1.21290 * 120.00097 * 179.97438 * 12 3 2 14 14 C 1.50708 * 120.00139 * 0.02562 * 12 3 2 15 15 C 1.52997 * 109.47192 * 179.97438 * 14 12 3 16 16 C 1.52998 * 109.46862 * 180.02562 * 15 14 12 17 17 N 1.46504 * 109.46787 * 180.02562 * 16 15 14 18 18 C 1.34774 * 120.00022 * 179.97438 * 17 16 15 19 19 O 1.21561 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.47783 * 120.00257 * 179.97438 * 18 17 16 21 21 C 1.39622 * 120.13132 * 0.27356 * 20 18 17 22 22 C 1.37891 * 119.86880 * 180.21178 * 21 20 18 23 23 C 1.38518 * 120.12773 * 359.51400 * 22 21 20 24 24 Cl 1.73599 * 119.86276 * 180.27827 * 23 22 21 25 25 C 1.38508 * 120.26473 * 0.25519 * 23 22 21 26 26 C 1.37893 * 120.13545 * 359.97438 * 25 23 22 27 27 H 1.09005 * 109.47212 * 299.99874 * 1 2 3 28 28 H 1.08995 * 109.47321 * 60.00265 * 1 2 3 29 29 H 1.09003 * 109.46815 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47486 * 239.99510 * 2 1 3 31 31 H 1.09008 * 109.47204 * 119.99634 * 2 1 3 32 32 H 0.96998 * 119.99781 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46784 * 59.99425 * 14 12 3 34 34 H 1.08997 * 109.46844 * 299.99455 * 14 12 3 35 35 H 1.08998 * 109.47246 * 59.99467 * 15 14 12 36 36 H 1.09003 * 109.46816 * 299.99568 * 15 14 12 37 37 H 1.08993 * 109.47478 * 60.00430 * 16 15 14 38 38 H 1.09003 * 109.47051 * 299.99423 * 16 15 14 39 39 H 0.96998 * 120.00063 * 359.97438 * 17 16 15 40 40 H 1.08003 * 120.05879 * 0.02562 * 21 20 18 41 41 H 1.07996 * 119.93584 * 179.79560 * 22 21 20 42 42 H 1.08004 * 119.92784 * 179.97438 * 25 23 22 43 43 H 1.08004 * 120.06370 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0743 3.0218 -1.3535 6 6 3.0372 1.2842 -2.1604 7 7 3.6791 0.1817 -1.8450 8 14 3.0501 1.9004 -3.9238 9 1 3.6537 3.2564 -3.9699 10 1 3.8493 0.9745 -4.7659 11 1 1.6581 1.9606 -4.4373 12 6 2.1425 2.0521 1.1623 13 8 2.5473 3.1955 1.1624 14 6 1.7796 1.3812 2.4621 15 6 2.0114 2.3538 3.6202 16 6 1.6435 1.6725 4.9397 17 7 1.8649 2.6040 6.0486 18 6 1.6062 2.2190 7.3140 19 8 1.1896 1.0987 7.5353 20 6 1.8301 3.1585 8.4326 21 6 2.3041 4.4475 8.1812 22 6 2.5152 5.3182 9.2294 23 6 2.2484 4.9195 10.5289 24 17 2.5098 6.0237 11.8427 25 6 1.7735 3.6437 10.7841 26 6 1.5629 2.7626 9.7445 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 4.1599 -0.3118 -2.5278 33 1 2.4016 0.4969 2.6006 34 1 0.7302 1.0873 2.4386 35 1 1.3897 3.2384 3.4818 36 1 3.0609 2.6474 3.6435 37 1 2.2656 0.7883 5.0779 38 1 0.5941 1.3786 4.9167 39 1 2.1977 3.4979 5.8720 40 1 2.5078 4.7609 7.1679 41 1 2.8849 6.3143 9.0364 42 1 1.5676 3.3385 11.7994 43 1 1.1921 1.7681 9.9448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:02 Heat of formation + Delta-G solvation = -60.890620 kcal Electronic energy + Delta-G solvation = -25416.065612 eV Core-core repulsion = 21486.817393 eV Total energy + Delta-G solvation = -3929.248220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.52088 -38.88206 -38.55779 -36.88334 -35.74837 -34.90983 -32.83517 -31.99081 -31.51642 -31.07247 -29.43124 -27.17772 -24.88667 -23.85909 -23.19387 -22.32976 -21.59191 -20.73942 -18.75400 -18.39292 -16.93272 -16.80053 -16.46208 -15.89978 -15.79300 -15.26790 -15.24644 -15.01923 -14.64562 -14.22356 -14.10933 -13.92866 -13.74212 -13.44152 -12.91491 -12.71723 -12.65977 -12.23943 -12.07742 -11.94882 -11.87938 -11.65756 -11.40473 -11.32297 -11.25143 -11.03058 -10.88116 -10.69653 -10.37315 -10.29173 -10.18828 -10.07955 -9.61034 -9.35656 -9.10250 -8.91682 -8.40429 -7.42434 -6.32316 -4.00934 0.23145 0.77161 1.59184 2.46190 2.92875 3.19168 3.24678 3.28005 3.37576 3.92545 4.15662 4.21343 4.32185 4.40239 4.71373 4.75120 4.83281 5.00183 5.05502 5.19179 5.22305 5.40514 5.42228 5.59167 5.66489 5.75186 5.77135 5.80187 5.85141 5.87360 6.09896 6.15449 6.19947 6.25188 6.33382 6.44151 6.51281 6.55504 6.87087 7.21596 7.29127 7.57822 7.97547 8.29780 8.51717 9.19813 9.40595 10.02517 10.72886 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.001706 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.686229 B =16411.041370 C =17199.034273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.442 5.442 4 C -0.310 4.310 5 H 0.086 0.914 6 C 0.038 3.962 7 N -0.872 5.872 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.462 3.538 13 O -0.584 6.584 14 C -0.132 4.132 15 C -0.112 4.112 16 C 0.117 3.883 17 N -0.720 5.720 18 C 0.555 3.445 19 O -0.536 6.536 20 C -0.128 4.128 21 C -0.073 4.073 22 C -0.117 4.117 23 C -0.014 4.014 24 Cl -0.065 7.065 25 C -0.119 4.119 26 C -0.048 4.048 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.136 4.881 22.351 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.161 5.161 4 C -0.438 4.438 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.745 3.255 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.250 3.750 13 O -0.468 6.468 14 C -0.173 4.173 15 C -0.150 4.150 16 C -0.006 4.006 17 N -0.372 5.372 18 C 0.342 3.658 19 O -0.414 6.414 20 C -0.131 4.131 21 C -0.092 4.092 22 C -0.136 4.136 23 C -0.041 4.041 24 Cl -0.036 7.036 25 C -0.137 4.137 26 C -0.067 4.067 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.090 4.566 22.464 23.286 hybrid contribution 0.271 0.624 -0.899 1.127 sum -3.819 5.190 21.566 22.508 Atomic orbital electron populations 1.22226 0.98244 1.00382 1.01510 1.21461 0.91584 0.85655 1.03474 1.43447 1.56024 1.11724 1.04898 1.19314 1.34897 0.98480 0.91096 0.89588 1.25423 0.94076 0.96569 1.00546 1.69916 1.29442 1.17564 1.34076 0.86140 0.78349 0.78826 0.82212 1.19769 1.21001 1.19905 1.20317 0.81904 0.87869 0.84912 1.90505 1.50423 1.18904 1.86988 1.21537 1.02615 0.99282 0.93891 1.21481 1.03267 0.98906 0.91344 1.21543 1.01780 0.92400 0.84852 1.45983 1.67006 1.18007 1.06159 1.18160 0.77984 0.86925 0.82751 1.90791 1.45491 1.20620 1.84482 1.20138 1.03783 0.94739 0.94423 1.21353 0.96142 0.92157 0.99579 1.21033 1.01130 1.01026 0.90369 1.21222 1.01527 0.91921 0.89437 1.98394 1.94902 1.62541 1.47753 1.21076 1.00382 0.91765 1.00527 1.21273 0.94992 1.00039 0.90402 0.93825 0.92468 0.93090 0.87947 0.93265 0.92234 0.89887 0.90166 0.90810 0.90674 0.91091 0.91182 0.76303 0.84347 0.84099 0.84145 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.15 37.16 0.38 -2.50 16 2 C 0.10 2.16 5.41 -4.04 -0.02 2.14 16 3 N -0.44 -10.91 2.50 -114.80 -0.29 -11.20 16 4 C -0.31 -8.48 8.84 -14.94 -0.13 -8.61 16 5 H 0.09 2.46 7.82 -52.48 -0.41 2.05 16 6 C 0.04 1.00 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.40 11.61 55.50 0.64 -22.76 16 8 Si 0.92 20.46 29.59 -169.99 -5.03 15.43 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 C 0.46 10.82 7.59 -10.98 -0.08 10.74 16 13 O -0.58 -15.68 15.89 5.55 0.09 -15.59 16 14 C -0.13 -2.25 4.31 -27.88 -0.12 -2.37 16 15 C -0.11 -1.61 4.62 -26.73 -0.12 -1.73 16 16 C 0.12 1.44 5.67 -4.04 -0.02 1.42 16 17 N -0.72 -7.81 5.51 -61.27 -0.34 -8.15 16 18 C 0.56 6.70 7.77 -12.36 -0.10 6.60 16 19 O -0.54 -8.28 16.35 5.31 0.09 -8.19 16 20 C -0.13 -1.22 5.87 -104.97 -0.62 -1.84 16 21 C -0.07 -0.55 9.54 -39.19 -0.37 -0.92 16 22 C -0.12 -0.82 9.81 -39.61 -0.39 -1.21 16 23 C -0.01 -0.11 6.33 -39.38 -0.25 -0.36 16 24 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.96 16 25 C -0.12 -0.87 9.81 -39.61 -0.39 -1.26 16 26 C -0.05 -0.42 9.59 -39.19 -0.38 -0.79 16 27 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.40 5.76 -51.93 -0.30 2.10 16 31 H 0.05 0.94 6.66 -51.92 -0.35 0.59 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 33 H 0.08 1.34 7.41 -51.93 -0.38 0.95 16 34 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 35 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 3.42 6.50 -40.82 -0.27 3.15 16 40 H 0.14 0.76 6.40 -52.48 -0.34 0.42 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.15 1.25 7.65 -52.48 -0.40 0.85 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -32.89 376.51 -9.00 -41.89 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.64 Total: 4.63 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.70 Total: 0.23 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.02 Total: -42.10 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.78 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.89 -9.00 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.997 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds