Wall clock time and date at job start Tue Mar 31 2020 20:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47095 * 2 1 4 4 C 1.37096 * 120.00122 * 265.87189 * 3 2 1 5 5 H 1.07997 * 120.00084 * 140.39651 * 4 3 2 6 6 C 1.38948 * 120.00273 * 320.39139 * 4 3 2 7 7 N 1.31404 * 120.00237 * 157.68069 * 6 4 3 8 8 Si 1.86806 * 119.99759 * 337.68492 * 6 4 3 9 9 H 1.48504 * 109.47071 * 94.22679 * 8 6 4 10 10 H 1.48498 * 109.47069 * 214.22661 * 8 6 4 11 11 H 1.48501 * 109.47183 * 334.22731 * 8 6 4 12 12 C 1.34780 * 119.99894 * 85.87491 * 3 2 1 13 13 O 1.21294 * 119.99981 * 179.97438 * 12 3 2 14 14 C 1.50696 * 119.99817 * 359.97438 * 12 3 2 15 15 C 1.53002 * 109.47275 * 180.02562 * 14 12 3 16 16 H 1.09001 * 109.46419 * 304.99892 * 15 14 12 17 17 N 1.46496 * 109.47224 * 64.99543 * 15 14 12 18 18 C 1.34775 * 119.99769 * 61.19728 * 17 15 14 19 19 C 1.50703 * 120.00084 * 185.07431 * 18 17 15 20 20 O 1.21282 * 120.00281 * 5.07782 * 18 17 15 21 21 C 1.50698 * 109.47300 * 185.00412 * 15 14 12 22 22 C 1.38240 * 119.99150 * 22.71555 * 21 15 14 23 23 C 1.38207 * 120.01562 * 179.97438 * 22 21 15 24 24 C 1.38352 * 119.98761 * 0.02840 * 23 22 21 25 25 Cl 1.73600 * 120.01355 * 179.97438 * 24 23 22 26 26 C 1.38349 * 119.97010 * 0.27403 * 24 23 22 27 27 C 1.38207 * 119.99209 * 359.40142 * 26 24 23 28 28 H 1.09008 * 109.46960 * 299.99981 * 1 2 3 29 29 H 1.09001 * 109.47159 * 59.99241 * 1 2 3 30 30 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46357 * 240.00459 * 2 1 3 32 32 H 1.09000 * 109.47395 * 120.00266 * 2 1 3 33 33 H 0.97003 * 120.00611 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47277 * 59.99963 * 14 12 3 35 35 H 1.09002 * 109.47214 * 300.00237 * 14 12 3 36 36 H 0.96993 * 120.00572 * 241.19366 * 17 15 14 37 37 H 1.08994 * 109.47123 * 0.02562 * 19 18 17 38 38 H 1.09004 * 109.47030 * 119.99847 * 19 18 17 39 39 H 1.08999 * 109.46951 * 239.99718 * 19 18 17 40 40 H 1.08006 * 119.98635 * 0.02562 * 22 21 15 41 41 H 1.08004 * 120.00722 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.00517 * 179.72253 * 26 24 23 43 43 H 1.07999 * 120.00123 * 180.31893 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3274 1.9990 -1.1842 5 1 2.0721 3.0376 -1.3342 6 6 2.9693 1.2890 -2.1914 7 7 2.8828 1.6941 -3.4385 8 14 3.9552 -0.2415 -1.7728 9 1 3.0978 -1.4428 -1.9370 10 1 5.1254 -0.3405 -2.6816 11 1 4.4260 -0.1578 -0.3668 12 6 2.1638 2.0445 1.1642 13 8 2.5686 3.1880 1.1643 14 6 1.8236 1.3656 2.4658 15 6 2.0756 2.3309 3.6258 16 1 3.1025 2.6934 3.5801 17 7 1.1528 3.4644 3.5271 18 6 -0.1777 3.2573 3.5855 19 6 -1.1293 4.4057 3.3698 20 8 -0.6091 2.1466 3.8117 21 6 1.8535 1.6146 4.9329 22 6 1.9463 0.2365 4.9900 23 6 1.7432 -0.4210 6.1886 24 6 1.4464 0.3003 7.3314 25 17 1.1906 -0.5249 8.8371 26 6 1.3476 1.6790 7.2722 27 6 1.5574 2.3359 6.0745 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.3312 1.1987 -4.1417 34 1 2.4473 0.4800 2.5876 35 1 0.7737 1.0724 2.4591 36 1 1.4992 4.3640 3.4197 37 1 -0.5620 5.3171 3.1809 38 1 -1.7684 4.1920 2.5130 39 1 -1.7458 4.5386 4.2588 40 1 2.1783 -0.3264 4.0979 41 1 1.8161 -1.4977 6.2332 42 1 1.1115 2.2422 8.1630 43 1 1.4854 3.4125 6.0293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:06 Heat of formation + Delta-G solvation = -60.216589 kcal Electronic energy + Delta-G solvation = -27898.479032 eV Core-core repulsion = 23969.260040 eV Total energy + Delta-G solvation = -3929.218992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64933 -40.25242 -39.70045 -37.53784 -37.07890 -35.92931 -34.35499 -33.20002 -31.99116 -31.36607 -30.58160 -29.98347 -27.05503 -25.15814 -24.42051 -23.65700 -22.54555 -21.23666 -20.11830 -18.86489 -18.52365 -18.34486 -17.67583 -17.35650 -16.91213 -16.45746 -16.12981 -15.82971 -15.68976 -15.38848 -14.98078 -14.75747 -14.55531 -14.50535 -14.35820 -14.24759 -13.94437 -13.86217 -13.41307 -13.29253 -13.04473 -12.96271 -12.80246 -12.68457 -12.54445 -12.42096 -12.30536 -12.11926 -11.95040 -11.71511 -11.62087 -11.02330 -10.76645 -10.31003 -10.06088 -9.94931 -9.65857 -9.43646 -8.49836 -6.11992 0.17926 0.38136 1.17477 1.20123 1.32195 1.43880 1.75291 1.99878 2.19090 2.37677 2.63855 2.78320 2.97470 3.62339 3.77085 3.89775 3.97123 4.02172 4.11744 4.13182 4.27247 4.38514 4.42172 4.47321 4.50452 4.54343 4.61746 4.67603 4.76266 4.87967 4.91507 5.00297 5.01700 5.07564 5.26150 5.28337 5.33408 5.44518 5.57369 5.67699 5.85210 6.07328 6.59140 6.70535 6.98022 7.34736 7.37424 7.91536 8.67369 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.003504 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.284957 B = 7988.578728 C = 8967.646950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.080 3.920 3 N -0.480 5.480 4 C -0.327 4.327 5 H 0.044 0.956 6 C 0.014 3.986 7 N -0.912 5.912 8 Si 0.941 3.059 9 H -0.244 1.244 10 H -0.289 1.289 11 H -0.255 1.255 12 C 0.468 3.532 13 O -0.598 6.598 14 C -0.147 4.147 15 C 0.207 3.793 16 H 0.108 0.892 17 N -0.705 5.705 18 C 0.504 3.496 19 C -0.167 4.167 20 O -0.574 6.574 21 C -0.074 4.074 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.049 4.049 25 Cl -0.074 7.074 26 C -0.113 4.113 27 C -0.098 4.098 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.278 0.722 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.413 0.587 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 -3.369 21.353 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.043 4.043 3 N -0.203 5.203 4 C -0.455 4.455 5 H 0.062 0.938 6 C -0.188 4.188 7 N -0.550 5.550 8 Si 0.765 3.235 9 H -0.168 1.168 10 H -0.216 1.216 11 H -0.179 1.179 12 C 0.258 3.742 13 O -0.481 6.481 14 C -0.187 4.187 15 C 0.101 3.899 16 H 0.126 0.874 17 N -0.356 5.356 18 C 0.292 3.708 19 C -0.227 4.227 20 O -0.454 6.454 21 C -0.075 4.075 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.075 4.075 25 Cl -0.046 7.046 26 C -0.131 4.131 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.250 0.750 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.933 -3.665 21.404 22.069 hybrid contribution 0.573 0.104 -0.726 0.931 sum -3.360 -3.561 20.678 21.250 Atomic orbital electron populations 1.22031 0.94799 1.02968 1.01314 1.22025 0.96046 0.83698 1.02495 1.43873 1.58394 1.13073 1.04916 1.18565 1.38973 0.97070 0.90867 0.93837 1.26113 0.96658 1.01944 0.94063 1.69878 1.41639 1.42989 1.00452 0.85930 0.78814 0.79485 0.79320 1.16848 1.21636 1.17904 1.21017 0.80006 0.87495 0.85673 1.90480 1.50243 1.19784 1.87635 1.22210 1.05143 1.00144 0.91214 1.19394 0.94431 0.86419 0.89664 0.87422 1.45957 1.05464 1.10761 1.73443 1.21325 0.83457 0.91055 0.74958 1.21858 0.99136 0.96563 1.05100 1.90665 1.78032 1.26849 1.49831 1.20112 0.98507 0.94300 0.94559 1.21241 0.99483 0.93705 0.98215 1.21198 0.99727 1.01128 0.90889 1.21048 1.05578 0.93185 0.87708 1.98355 1.95233 1.78930 1.32044 1.21163 1.00419 0.92375 0.99160 1.20960 0.98753 1.00686 0.91202 0.92812 0.94313 0.89064 0.91946 0.88590 0.91217 0.86830 0.87902 0.75038 0.88799 0.89474 0.87321 0.83871 0.83487 0.83633 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 10.17 71.98 0.73 -4.40 16 2 C 0.08 3.00 4.56 86.38 0.39 3.39 16 3 N -0.48 -22.50 2.14 -635.53 -1.36 -23.86 16 4 C -0.33 -18.76 9.31 84.04 0.78 -17.98 16 5 H 0.04 2.93 7.95 -2.91 -0.02 2.90 16 6 C 0.01 0.79 5.26 84.93 0.45 1.24 16 7 N -0.91 -53.88 13.96 21.66 0.30 -53.58 16 8 Si 0.94 41.21 25.20 68.60 1.73 42.94 16 9 H -0.24 -9.42 6.64 99.48 0.66 -8.76 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 C 0.47 20.22 7.47 87.66 0.65 20.88 16 13 O -0.60 -29.36 15.25 -3.07 -0.05 -29.41 16 14 C -0.15 -4.62 2.94 29.85 0.09 -4.53 16 15 C 0.21 5.60 2.57 44.25 0.11 5.72 16 16 H 0.11 2.92 7.95 -2.39 -0.02 2.90 16 17 N -0.71 -18.05 3.65 -446.10 -1.63 -19.68 16 18 C 0.50 13.56 6.92 87.66 0.61 14.16 16 19 C -0.17 -3.26 10.39 71.24 0.74 -2.52 16 20 O -0.57 -18.96 14.34 -3.03 -0.04 -19.01 16 21 C -0.07 -1.77 4.11 -19.86 -0.08 -1.85 16 22 C -0.11 -2.44 9.12 22.26 0.20 -2.24 16 23 C -0.11 -2.32 9.83 22.29 0.22 -2.10 16 24 C -0.05 -1.03 6.32 22.32 0.14 -0.89 16 25 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.50 16 26 C -0.11 -2.29 9.83 22.29 0.22 -2.07 16 27 C -0.10 -2.11 8.85 22.27 0.20 -1.91 16 28 H 0.05 1.79 6.73 -2.38 -0.02 1.77 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 2.48 3.74 -2.38 -0.01 2.47 16 32 H 0.10 2.86 6.61 -2.39 -0.02 2.84 16 33 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.11 3.00 5.55 -2.39 -0.01 2.99 16 35 H 0.10 3.40 4.83 -2.39 -0.01 3.38 16 36 H 0.41 9.27 8.67 -92.71 -0.80 8.46 16 37 H 0.09 1.45 7.92 -2.39 -0.02 1.43 16 38 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.14 2.86 5.89 -2.91 -0.02 2.84 16 41 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 43 H 0.14 2.55 7.63 -2.91 -0.02 2.53 16 Total: -1.00 -73.54 362.46 4.54 -69.00 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.21 Total: 30.19 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.46 Total: 4.91 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -2.69 Total: -97.12 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.09 Total: -48.42 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.73 Total: 42.94 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -73.54 4.54 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.785 kcal (2) G-P(sol) polarization free energy of solvation -73.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds