Wall clock time and date at job start Tue Mar 31 2020 20:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99878 * 2 1 4 4 C 1.50705 * 109.46964 * 274.99799 * 3 2 1 5 5 H 1.08000 * 119.99986 * 4.52780 * 4 3 2 6 6 C 1.37873 * 120.00116 * 184.52799 * 4 3 2 7 7 N 1.31516 * 119.99883 * 6.08217 * 6 4 3 8 8 Si 1.86795 * 120.00368 * 186.08555 * 6 4 3 9 9 H 1.48496 * 109.47013 * 64.98938 * 8 6 4 10 10 H 1.48499 * 109.47479 * 184.99321 * 8 6 4 11 11 H 1.48500 * 109.46663 * 304.99429 * 8 6 4 12 12 S 1.65603 * 120.00350 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40004 * 335.05529 * 12 2 1 14 14 O 1.42102 * 106.40346 * 202.13304 * 12 2 1 15 15 N 1.65602 * 107.21731 * 88.59031 * 12 2 1 16 16 C 1.46502 * 119.99706 * 92.30104 * 15 12 2 17 17 C 1.46491 * 120.00046 * 272.30301 * 15 12 2 18 18 C 1.50699 * 109.47335 * 263.72645 * 17 15 12 19 19 N 1.30116 * 124.94977 * 274.78167 * 18 17 15 20 20 C 1.35787 * 109.63876 * 180.02562 * 19 18 17 21 21 C 1.39746 * 133.59567 * 179.97438 * 20 19 18 22 22 C 1.36596 * 119.88407 * 180.02562 * 21 20 19 23 23 C 1.38779 * 120.67173 * 359.97438 * 22 21 20 24 24 C 1.37853 * 120.45035 * 359.97438 * 23 22 21 25 25 C 1.38836 * 119.68811 * 0.04867 * 24 23 22 26 26 N 1.36042 * 124.94958 * 94.80196 * 18 17 15 27 27 H 0.96996 * 126.34695 * 359.97438 * 26 18 17 28 28 H 1.09001 * 109.46814 * 269.99925 * 1 2 3 29 29 H 1.08993 * 109.47513 * 29.99619 * 1 2 3 30 30 H 1.08997 * 109.47283 * 150.00232 * 1 2 3 31 31 H 1.08998 * 109.46789 * 34.99610 * 3 2 1 32 32 H 1.08995 * 109.47122 * 154.99709 * 3 2 1 33 33 H 0.97000 * 119.99850 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47103 * 270.00136 * 16 15 12 35 35 H 1.09001 * 109.47280 * 30.00238 * 16 15 12 36 36 H 1.09003 * 109.47027 * 150.00120 * 16 15 12 37 37 H 1.09007 * 109.47312 * 143.72739 * 17 15 12 38 38 H 1.08999 * 109.47655 * 23.72812 * 17 15 12 39 39 H 1.07997 * 120.05628 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.66784 * 179.72471 * 22 21 20 41 41 H 1.07997 * 119.77552 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.15672 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.8663 1.2328 -2.2258 6 6 3.0796 2.9007 -1.6760 7 7 3.7559 3.4815 -0.7091 8 14 3.1191 3.6135 -3.4021 9 1 1.7620 4.0892 -3.7723 10 1 4.0717 4.7518 -3.4460 11 1 3.5550 2.5660 -4.3602 12 16 2.2931 -1.4341 0.0006 13 8 1.4233 -2.3994 0.5760 14 8 3.5873 -1.1500 0.5141 15 7 2.5045 -1.8788 -1.5805 16 6 3.7202 -1.4836 -2.2962 17 6 1.4759 -2.6671 -2.2635 18 6 1.8428 -4.1277 -2.2076 19 7 2.6300 -4.7313 -3.0496 20 6 2.7447 -6.0407 -2.7090 21 6 3.4454 -7.1203 -3.2535 22 6 3.3590 -8.3520 -2.6694 23 6 2.5810 -8.5453 -1.5366 24 6 1.8820 -7.4947 -0.9815 25 6 1.9574 -6.2357 -1.5618 26 7 1.3989 -5.0074 -1.2696 27 1 0.8013 -4.8083 -0.5319 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6500 2.0043 0.5894 32 1 3.1857 1.1178 0.4343 33 1 4.2756 4.2798 -0.8924 34 1 3.5605 -0.5195 -2.7789 35 1 4.5475 -1.4043 -1.5909 36 1 3.9571 -2.2332 -3.0513 37 1 1.4059 -2.3497 -3.3039 38 1 0.5151 -2.5148 -1.7718 39 1 4.0534 -6.9811 -4.1351 40 1 3.8984 -9.1848 -3.0958 41 1 2.5227 -9.5254 -1.0868 42 1 1.2777 -7.6506 -0.1001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078351575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:54 Heat of formation + Delta-G solvation = 2.679890 kcal Electronic energy + Delta-G solvation = -27736.462556 eV Core-core repulsion = 23844.307417 eV Total energy + Delta-G solvation = -3892.155138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16249 -37.64722 -36.84517 -35.86208 -35.56717 -35.35387 -33.16467 -32.54612 -30.28106 -29.96911 -27.93267 -27.50496 -25.23262 -24.76832 -22.50021 -22.34452 -22.08897 -20.97962 -18.56996 -17.93936 -17.50329 -17.11614 -16.94277 -16.46530 -16.00908 -15.63924 -15.26062 -14.71859 -14.38523 -14.24252 -14.04101 -14.02596 -13.56440 -13.37324 -12.83740 -12.68443 -12.44537 -12.26713 -12.19067 -12.00285 -11.90638 -11.81276 -11.65090 -11.30446 -11.22894 -11.21729 -11.16362 -10.83517 -10.74991 -10.57204 -10.15023 -10.03181 -9.86691 -8.97563 -8.53519 -8.47286 -8.23527 -8.12324 -6.15538 -4.22301 0.78711 1.11483 1.43532 2.64294 2.87402 3.23924 3.30114 3.30580 3.39366 3.78988 3.92624 4.08015 4.32879 4.51440 4.73126 4.78949 4.86996 4.99307 5.18094 5.24375 5.31717 5.34068 5.38243 5.46762 5.58538 5.66568 5.94179 5.96096 6.09139 6.12755 6.24802 6.30593 6.38616 6.42813 6.43799 6.46329 6.69635 6.77835 7.22558 7.30038 7.36136 7.55211 7.80547 7.84460 8.09264 8.81912 9.43661 10.92372 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.003375 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.824174 B = 8293.804988 C = 9036.676365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.994 5.994 3 C 0.243 3.757 4 C -0.543 4.543 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.274 1.274 12 S 2.785 3.215 13 O -1.004 7.004 14 O -0.968 6.968 15 N -0.999 5.999 16 C 0.087 3.913 17 C 0.205 3.795 18 C 0.273 3.727 19 N -0.480 5.480 20 C 0.045 3.955 21 C -0.063 4.063 22 C -0.132 4.132 23 C -0.106 4.106 24 C -0.110 4.110 25 C 0.046 3.954 26 N -0.586 5.586 27 H 0.430 0.570 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -18.125 -2.945 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.837 5.837 3 C 0.121 3.879 4 C -0.582 4.582 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.199 1.199 12 S 2.794 3.206 13 O -0.988 6.988 14 O -0.952 6.952 15 N -0.836 5.836 16 C -0.058 4.058 17 C 0.076 3.924 18 C 0.003 3.997 19 N -0.201 5.201 20 C -0.074 4.074 21 C -0.083 4.083 22 C -0.153 4.153 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.065 4.065 26 N -0.198 5.198 27 H 0.270 0.730 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.176 -18.031 -2.863 18.976 hybrid contribution -0.770 0.503 -0.213 0.945 sum -5.947 -17.527 -3.076 18.763 Atomic orbital electron populations 1.21251 0.80143 1.02011 1.00737 1.57685 1.14143 1.23469 1.88385 1.19268 0.92324 0.78617 0.97687 1.21475 1.32692 1.10912 0.93151 0.91845 1.24964 0.94675 0.96879 0.97290 1.69936 1.29575 1.20548 1.32420 0.86623 0.77904 0.78868 0.84426 1.20287 1.21220 1.19885 1.01846 0.73207 0.72755 0.72823 1.93477 1.68291 1.61099 1.75941 1.93584 1.39613 1.84936 1.77112 1.57950 1.27766 1.65134 1.32742 1.21642 0.85004 1.01157 0.97980 1.19583 0.90655 0.80331 1.01862 1.24279 0.94185 0.94697 0.86511 1.70426 1.18434 1.04437 1.26834 1.19167 1.00680 0.92230 0.95330 1.20021 0.98234 0.90256 0.99794 1.20617 1.00839 0.96818 0.96992 1.20854 0.97204 0.98095 0.96432 1.19994 1.02701 0.89492 1.00934 1.18977 1.00399 0.87759 0.99382 1.43226 1.41969 1.07241 1.27324 0.72956 0.93595 0.90591 0.93214 0.94732 0.92638 0.92435 0.90914 0.90275 0.90856 0.86522 0.88431 0.85415 0.85506 0.85418 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.64 10.31 59.85 0.62 2.26 16 2 N -0.99 -19.55 3.23 -123.05 -0.40 -19.95 16 3 C 0.24 5.85 5.42 -5.19 -0.03 5.82 16 4 C -0.54 -13.66 9.38 -34.44 -0.32 -13.98 16 5 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 6 C 0.07 1.73 5.45 -17.82 -0.10 1.63 16 7 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 8 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 S 2.79 53.53 6.01 -107.50 -0.65 52.88 16 13 O -1.00 -18.29 16.29 -57.17 -0.93 -19.23 16 14 O -0.97 -22.50 15.23 -57.17 -0.87 -23.37 16 15 N -1.00 -16.50 3.23 -123.05 -0.40 -16.90 16 16 C 0.09 1.46 10.66 59.85 0.64 2.10 16 17 C 0.20 2.73 5.96 -5.20 -0.03 2.70 16 18 C 0.27 3.98 7.65 -154.81 -1.18 2.80 16 19 N -0.48 -7.61 11.27 -8.23 -0.09 -7.70 16 20 C 0.05 0.67 7.23 -84.70 -0.61 0.05 16 21 C -0.06 -0.77 10.05 -39.61 -0.40 -1.16 16 22 C -0.13 -1.28 9.96 -39.97 -0.40 -1.68 16 23 C -0.11 -1.00 10.03 -39.52 -0.40 -1.39 16 24 C -0.11 -1.21 10.07 -39.50 -0.40 -1.61 16 25 C 0.05 0.63 7.31 -83.99 -0.61 0.02 16 26 N -0.59 -7.94 6.23 -8.00 -0.05 -7.99 16 27 H 0.43 5.12 8.96 -40.82 -0.37 4.75 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.05 0.63 7.21 -51.93 -0.37 0.25 16 31 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.06 1.50 6.89 -51.93 -0.36 1.14 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.44 7.01 -51.93 -0.36 1.07 16 36 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 37 H 0.12 1.34 8.12 -51.93 -0.42 0.92 16 38 H 0.10 1.08 7.01 -51.93 -0.36 0.71 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -32.60 369.20 -10.92 -43.52 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.59 Total: 4.67 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -3.22 Total: -2.45 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -0.20 Total: -76.68 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.80 Total: -42.60 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.65 Total: 52.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.60 -10.92 -43.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078351575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.204 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds