Wall clock time and date at job start Tue Mar 31 2020 20:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99878 * 2 1 4 4 C 1.50705 * 109.46964 * 274.99799 * 3 2 1 5 5 H 1.08000 * 119.99986 * 4.52780 * 4 3 2 6 6 C 1.37873 * 120.00116 * 184.52799 * 4 3 2 7 7 N 1.31516 * 119.99883 * 6.08217 * 6 4 3 8 8 Si 1.86795 * 120.00368 * 186.08555 * 6 4 3 9 9 H 1.48496 * 109.47013 * 64.98938 * 8 6 4 10 10 H 1.48499 * 109.47479 * 184.99321 * 8 6 4 11 11 H 1.48500 * 109.46663 * 304.99429 * 8 6 4 12 12 S 1.65603 * 120.00350 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40004 * 335.05529 * 12 2 1 14 14 O 1.42102 * 106.40346 * 202.13304 * 12 2 1 15 15 N 1.65602 * 107.21731 * 88.59031 * 12 2 1 16 16 C 1.46502 * 119.99706 * 92.30104 * 15 12 2 17 17 C 1.46491 * 120.00046 * 272.30301 * 15 12 2 18 18 C 1.50699 * 109.47335 * 263.72645 * 17 15 12 19 19 N 1.30116 * 124.94977 * 274.78167 * 18 17 15 20 20 C 1.35787 * 109.63876 * 180.02562 * 19 18 17 21 21 C 1.39746 * 133.59567 * 179.97438 * 20 19 18 22 22 C 1.36596 * 119.88407 * 180.02562 * 21 20 19 23 23 C 1.38779 * 120.67173 * 359.97438 * 22 21 20 24 24 C 1.37853 * 120.45035 * 359.97438 * 23 22 21 25 25 C 1.38836 * 119.68811 * 0.04867 * 24 23 22 26 26 N 1.36042 * 124.94958 * 94.80196 * 18 17 15 27 27 H 0.96996 * 126.34695 * 359.97438 * 26 18 17 28 28 H 1.09001 * 109.46814 * 269.99925 * 1 2 3 29 29 H 1.08993 * 109.47513 * 29.99619 * 1 2 3 30 30 H 1.08997 * 109.47283 * 150.00232 * 1 2 3 31 31 H 1.08998 * 109.46789 * 34.99610 * 3 2 1 32 32 H 1.08995 * 109.47122 * 154.99709 * 3 2 1 33 33 H 0.97000 * 119.99850 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47103 * 270.00136 * 16 15 12 35 35 H 1.09001 * 109.47280 * 30.00238 * 16 15 12 36 36 H 1.09003 * 109.47027 * 150.00120 * 16 15 12 37 37 H 1.09007 * 109.47312 * 143.72739 * 17 15 12 38 38 H 1.08999 * 109.47655 * 23.72812 * 17 15 12 39 39 H 1.07997 * 120.05628 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.66784 * 179.72471 * 22 21 20 41 41 H 1.07997 * 119.77552 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.15672 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.8663 1.2328 -2.2258 6 6 3.0796 2.9007 -1.6760 7 7 3.7559 3.4815 -0.7091 8 14 3.1191 3.6135 -3.4021 9 1 1.7620 4.0892 -3.7723 10 1 4.0717 4.7518 -3.4460 11 1 3.5550 2.5660 -4.3602 12 16 2.2931 -1.4341 0.0006 13 8 1.4233 -2.3994 0.5760 14 8 3.5873 -1.1500 0.5141 15 7 2.5045 -1.8788 -1.5805 16 6 3.7202 -1.4836 -2.2962 17 6 1.4759 -2.6671 -2.2635 18 6 1.8428 -4.1277 -2.2076 19 7 2.6300 -4.7313 -3.0496 20 6 2.7447 -6.0407 -2.7090 21 6 3.4454 -7.1203 -3.2535 22 6 3.3590 -8.3520 -2.6694 23 6 2.5810 -8.5453 -1.5366 24 6 1.8820 -7.4947 -0.9815 25 6 1.9574 -6.2357 -1.5618 26 7 1.3989 -5.0074 -1.2696 27 1 0.8013 -4.8083 -0.5319 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6500 2.0043 0.5894 32 1 3.1857 1.1178 0.4343 33 1 4.2756 4.2798 -0.8924 34 1 3.5605 -0.5195 -2.7789 35 1 4.5475 -1.4043 -1.5909 36 1 3.9571 -2.2332 -3.0513 37 1 1.4059 -2.3497 -3.3039 38 1 0.5151 -2.5148 -1.7718 39 1 4.0534 -6.9811 -4.1351 40 1 3.8984 -9.1848 -3.0958 41 1 2.5227 -9.5254 -1.0868 42 1 1.2777 -7.6506 -0.1001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078351575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:53 Heat of formation + Delta-G solvation = -20.084511 kcal Electronic energy + Delta-G solvation = -27737.449694 eV Core-core repulsion = 23844.307417 eV Total energy + Delta-G solvation = -3893.142277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.12565 -38.61781 -38.37567 -37.24992 -37.04739 -36.94952 -34.47323 -34.14043 -31.29384 -30.85993 -29.66942 -28.62097 -26.79733 -26.07222 -24.16371 -23.39157 -23.01738 -22.03234 -20.00551 -19.05671 -18.83728 -18.47141 -18.32767 -18.06743 -17.45261 -16.66708 -16.61437 -16.22626 -15.57875 -15.27284 -15.22203 -15.03089 -14.94092 -14.85314 -14.11999 -14.07598 -13.97045 -13.83323 -13.53537 -13.42275 -12.98693 -12.96569 -12.92415 -12.83727 -12.68662 -12.55802 -12.45626 -12.42341 -12.33699 -11.90921 -11.74510 -11.72662 -11.04064 -10.55790 -10.30595 -9.79194 -9.37254 -9.13081 -8.15105 -6.28509 -0.48877 -0.01681 0.56798 1.47604 1.48429 1.55653 1.58003 1.91465 2.01615 2.44664 2.50237 2.91200 3.04675 3.16686 3.29642 3.57026 3.66698 4.09723 4.12576 4.18351 4.22441 4.38849 4.47363 4.51359 4.52733 4.71433 4.75650 4.79624 4.86640 4.96217 5.04535 5.07752 5.14643 5.25126 5.36581 5.45352 5.49942 5.56336 5.58176 5.75833 5.93148 5.96837 6.11052 6.35805 6.83473 6.83654 7.41694 8.93050 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.003375 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.824174 B = 8293.804988 C = 9036.676365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.999 5.999 3 C 0.256 3.744 4 C -0.541 4.541 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.930 5.930 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.292 1.292 11 H -0.262 1.262 12 S 2.796 3.204 13 O -0.994 6.994 14 O -1.015 7.015 15 N -0.995 5.995 16 C 0.093 3.907 17 C 0.199 3.801 18 C 0.258 3.742 19 N -0.504 5.504 20 C 0.008 3.992 21 C -0.083 4.083 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.122 4.122 25 C 0.028 3.972 26 N -0.585 5.585 27 H 0.435 0.565 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 -20.503 -4.258 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.841 5.841 3 C 0.132 3.868 4 C -0.580 4.580 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.569 5.569 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.218 1.218 11 H -0.186 1.186 12 S 2.805 3.195 13 O -0.978 6.978 14 O -0.999 6.999 15 N -0.834 5.834 16 C -0.052 4.052 17 C 0.072 3.928 18 C -0.012 4.012 19 N -0.226 5.226 20 C -0.111 4.111 21 C -0.103 4.103 22 C -0.143 4.143 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.083 4.083 26 N -0.198 5.198 27 H 0.276 0.724 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.155 0.845 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.178 0.822 41 H 0.182 0.818 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.673 -20.442 -4.171 21.905 hybrid contribution -0.339 1.026 0.225 1.104 sum -7.012 -19.416 -3.945 21.017 Atomic orbital electron populations 1.21564 0.77572 1.03827 1.02179 1.57566 1.15856 1.21846 1.88854 1.18813 0.90862 0.80117 0.96991 1.21794 1.31812 1.10591 0.93783 0.90464 1.25833 0.94449 0.97482 1.01100 1.70082 1.30921 1.21199 1.34746 0.85591 0.78117 0.78045 0.79873 1.19160 1.21780 1.18641 1.01359 0.72253 0.72598 0.73298 1.93477 1.67717 1.60392 1.76215 1.93525 1.42186 1.85585 1.78605 1.57702 1.28410 1.65326 1.31971 1.21549 0.84617 1.01399 0.97620 1.19940 0.90434 0.79412 1.03032 1.24352 0.94725 0.95107 0.86970 1.70343 1.19097 1.05422 1.27767 1.19627 1.02304 0.92492 0.96646 1.20317 0.98676 0.90701 1.00570 1.21059 1.00026 0.96729 0.96528 1.21361 0.95381 0.99159 0.95688 1.20400 1.03312 0.88818 1.01712 1.19372 1.00667 0.88628 0.99628 1.43206 1.42019 1.07275 1.27258 0.72400 0.92435 0.90431 0.89766 0.96117 0.96445 0.92617 0.91629 0.92416 0.89057 0.84529 0.85943 0.84823 0.82234 0.81800 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.75 10.31 127.77 1.32 4.06 16 2 N -1.00 -39.03 3.23 -543.23 -1.75 -40.79 16 3 C 0.26 12.64 5.42 85.63 0.46 13.11 16 4 C -0.54 -27.25 9.38 25.60 0.24 -27.01 16 5 H 0.08 3.60 7.82 -2.91 -0.02 3.58 16 6 C 0.01 0.58 5.45 84.65 0.46 1.04 16 7 N -0.93 -53.56 13.29 21.45 0.28 -53.28 16 8 Si 0.96 41.03 29.54 68.60 2.03 43.06 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 12 S 2.80 107.30 6.01 -56.49 -0.34 106.96 16 13 O -0.99 -35.05 16.29 -128.00 -2.08 -37.14 16 14 O -1.01 -48.90 15.23 -128.00 -1.95 -50.85 16 15 N -1.00 -32.27 3.23 -543.22 -1.75 -34.02 16 16 C 0.09 3.15 10.66 127.77 1.36 4.52 16 17 C 0.20 4.98 5.96 85.63 0.51 5.49 16 18 C 0.26 7.31 7.65 137.92 1.05 8.36 16 19 N -0.50 -15.82 11.27 -179.96 -2.03 -17.85 16 20 C 0.01 0.23 7.23 39.45 0.29 0.51 16 21 C -0.08 -1.90 10.05 22.25 0.22 -1.68 16 22 C -0.12 -2.03 9.96 22.02 0.22 -1.81 16 23 C -0.10 -1.48 10.03 22.31 0.22 -1.25 16 24 C -0.12 -2.39 10.07 22.32 0.22 -2.16 16 25 C 0.03 0.73 7.31 38.86 0.28 1.01 16 26 N -0.59 -15.28 6.23 -179.22 -1.12 -16.39 16 27 H 0.43 9.82 8.96 -92.71 -0.83 8.99 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 2.26 8.07 -2.39 -0.02 2.24 16 30 H 0.08 1.87 7.21 -2.39 -0.02 1.85 16 31 H 0.02 1.07 8.11 -2.39 -0.02 1.05 16 32 H 0.02 1.00 6.89 -2.39 -0.02 0.98 16 33 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.06 2.18 7.01 -2.39 -0.02 2.17 16 36 H 0.09 2.72 8.07 -2.39 -0.02 2.70 16 37 H 0.14 2.86 8.12 -2.38 -0.02 2.84 16 38 H 0.12 2.38 7.01 -2.39 -0.02 2.36 16 39 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -72.66 369.20 -1.62 -74.28 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.22 Total: 21.81 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.87 Total: 4.20 kcal Atomic # 7 Polarization: -155.96 SS G_CDS: -6.37 Total: -162.33 kcal Atomic # 8 Polarization: -83.95 SS G_CDS: -4.03 Total: -87.98 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: 107.30 SS G_CDS: -0.34 Total: 106.96 kcal Total: -72.66 -1.62 -74.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078351575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.198 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds