Wall clock time and date at job start Tue Mar 31 2020 20:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99631 * 2 1 4 4 C 1.53000 * 109.46717 * 274.99620 * 3 2 1 5 5 C 1.47205 * 109.47477 * 180.02562 * 4 3 2 6 6 N 4.80466 * 117.01615 * 340.38032 * 2 1 3 7 7 S 1.65593 * 119.99960 * 179.97438 * 2 1 3 8 8 O 1.42105 * 106.40078 * 156.45760 * 7 2 1 9 9 O 1.42104 * 106.40454 * 23.54464 * 7 2 1 10 10 N 1.65598 * 107.22188 * 269.99874 * 7 2 1 11 11 C 1.46497 * 120.00244 * 270.00248 * 10 7 2 12 12 C 1.50703 * 109.47124 * 265.00133 * 11 10 7 13 13 H 1.08004 * 119.99979 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99921 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00008 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00441 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47139 * 89.99942 * 16 14 12 18 18 H 1.48496 * 109.47263 * 210.00571 * 16 14 12 19 19 H 1.48504 * 109.46756 * 330.00236 * 16 14 12 20 20 C 1.46504 * 119.99436 * 90.00261 * 10 7 2 21 21 C 1.50707 * 109.46935 * 95.00474 * 20 10 7 22 22 C 1.38227 * 119.62059 * 95.01845 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99275 * 21 20 10 27 27 H 1.09010 * 109.47059 * 270.00162 * 1 2 3 28 28 H 1.08993 * 109.47462 * 30.00071 * 1 2 3 29 29 H 1.09004 * 109.47333 * 150.00736 * 1 2 3 30 30 H 1.08993 * 109.47595 * 34.99533 * 3 2 1 31 31 H 1.08998 * 109.47145 * 155.00193 * 3 2 1 32 32 H 1.09001 * 109.47633 * 300.00195 * 4 3 2 33 33 H 1.09000 * 109.47572 * 60.00259 * 4 3 2 34 34 H 1.08999 * 109.47232 * 24.99515 * 11 10 7 35 35 H 1.08992 * 109.47302 * 145.00348 * 11 10 7 36 36 H 0.96996 * 120.00260 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47679 * 334.99942 * 20 10 7 38 38 H 1.09003 * 109.46652 * 214.99902 * 20 10 7 39 39 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 40 40 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 41 41 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 42 42 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3435 1.7732 -1.4371 5 6 3.0800 3.0478 -1.4373 6 7 3.6475 4.0319 -1.4372 7 16 2.2930 -1.4341 0.0006 8 8 3.5759 -1.1569 -0.5440 9 8 1.4114 -2.4067 -0.5435 10 7 2.5381 -1.8580 1.5826 11 6 3.7453 -1.4111 2.2820 12 6 4.7975 -2.4873 2.2058 13 1 4.5878 -3.4118 1.6884 14 6 6.0274 -2.2920 2.7974 15 7 6.9459 -3.2310 2.7304 16 14 6.3899 -0.6932 3.6929 17 1 6.0020 -0.8264 5.1201 18 1 7.8410 -0.3920 3.6003 19 1 5.6147 0.4097 3.0700 20 6 1.5478 -2.6799 2.2825 21 6 1.9538 -4.1292 2.2065 22 6 2.6718 -4.6929 3.2444 23 6 3.0356 -6.0284 3.1669 24 6 2.6708 -6.7475 2.0388 25 6 1.9526 -6.1163 1.0411 26 7 1.6196 -4.8449 1.1507 27 1 -0.3634 0.0000 1.0278 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8901 -0.5137 30 1 1.6501 2.0043 0.5893 31 1 3.1857 1.1178 0.4343 32 1 2.8909 1.0376 -2.0265 33 1 1.3553 1.9242 -1.8715 34 1 4.1212 -0.5017 1.8133 35 1 3.5066 -1.2098 3.3263 36 1 7.8113 -3.0935 3.1463 37 1 0.5720 -2.5508 1.8141 38 1 1.4931 -2.3722 3.3268 39 1 2.9428 -4.1014 4.1064 40 1 3.5935 -6.4965 3.9645 41 1 2.9404 -7.7889 1.9432 42 1 1.6611 -6.6705 0.1612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078760054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:32 Heat of formation + Delta-G solvation = 4.982673 kcal Electronic energy + Delta-G solvation = -28193.422660 eV Core-core repulsion = 24301.367378 eV Total energy + Delta-G solvation = -3892.055282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.60685 -37.51134 -36.68133 -35.99759 -35.93358 -35.16853 -32.62163 -31.82670 -31.37135 -31.00847 -28.16473 -26.60055 -25.47953 -23.39931 -22.94854 -22.08541 -21.39429 -18.67547 -17.78931 -17.47306 -17.08267 -16.63125 -16.26035 -16.03693 -15.61549 -15.10272 -15.05590 -14.74625 -14.39581 -14.10463 -13.66710 -13.35929 -13.30960 -12.97549 -12.86572 -12.73285 -12.67577 -12.41841 -12.39618 -12.28047 -11.96342 -11.77063 -11.68281 -11.51179 -11.27460 -11.21764 -11.15183 -10.93571 -10.65893 -10.55807 -10.29878 -9.61217 -9.25584 -9.15551 -8.90266 -8.64501 -8.45910 -8.16753 -6.10611 -4.09312 0.99012 1.68459 1.91058 2.66075 2.72950 3.20615 3.26358 3.29044 3.33674 3.82290 4.07448 4.34224 4.42968 4.69497 4.76678 4.84553 4.86539 5.10825 5.13415 5.21542 5.24958 5.33754 5.44048 5.45391 5.53535 5.61283 5.72438 5.76112 5.80358 5.84135 5.98148 6.13014 6.16851 6.30044 6.48995 6.62298 6.68600 6.76459 6.97917 7.25429 7.29219 7.48419 7.53126 8.45800 8.59379 8.96660 9.48179 11.02461 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010269 B = 0.005571 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.111343 B = 5025.096076 C = 7026.678400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.016 6.016 3 C 0.129 3.871 4 C -0.050 4.050 5 C 0.215 3.785 6 N -0.438 5.438 7 S 2.771 3.229 8 O -0.958 6.958 9 O -0.959 6.959 10 N -0.981 5.981 11 C 0.224 3.776 12 C -0.523 4.523 13 H 0.079 0.921 14 C 0.075 3.925 15 N -0.892 5.892 16 Si 0.867 3.133 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.188 3.812 21 C 0.112 3.888 22 C -0.118 4.118 23 C -0.079 4.079 24 C -0.176 4.176 25 C 0.085 3.915 26 N -0.460 5.460 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.264 0.736 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.601 2.121 -0.518 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.854 5.854 3 C 0.001 3.999 4 C -0.092 4.092 5 C -0.104 4.104 6 N -0.115 5.115 7 S 2.779 3.221 8 O -0.942 6.942 9 O -0.943 6.943 10 N -0.820 5.820 11 C 0.101 3.899 12 C -0.562 4.562 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.694 3.306 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.190 1.190 20 C 0.060 3.940 21 C -0.028 4.028 22 C -0.138 4.138 23 C -0.106 4.106 24 C -0.196 4.196 25 C -0.073 4.073 26 N -0.169 5.169 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.777 3.503 -1.897 15.304 hybrid contribution 0.882 0.083 1.515 1.755 sum -13.894 3.586 -0.382 14.355 Atomic orbital electron populations 1.21568 0.78754 1.03925 1.01974 1.58326 1.15336 1.21881 1.89814 1.21074 0.98237 0.86331 0.94210 1.19819 1.00184 0.88120 1.01108 1.28955 0.93580 0.94374 0.93464 1.81224 1.09665 1.12451 1.08186 1.02583 0.73272 0.72679 0.73580 1.93640 1.39405 1.84695 1.76439 1.93631 1.67015 1.56949 1.76672 1.57677 1.29785 1.62353 1.32226 1.19515 0.81867 0.95963 0.92546 1.21320 0.96579 1.02782 1.35533 0.90296 1.24836 0.95931 0.96037 0.95936 1.69891 1.05423 1.33241 1.44485 0.87010 0.78317 0.84914 0.80371 1.20134 1.21002 1.18989 1.19864 0.90615 0.84857 0.98635 1.21514 0.95211 0.96254 0.89809 1.21869 0.96513 0.95024 1.00417 1.21467 0.96891 0.94453 0.97742 1.22034 1.00790 1.01104 0.95675 1.22594 0.95765 0.90994 0.97938 1.67558 1.20046 1.06583 1.22711 0.92819 0.91039 0.89728 0.89562 0.88877 0.86456 0.86946 0.94942 0.95303 0.92633 0.89731 0.89341 0.84867 0.85484 0.85694 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.68 59.85 0.64 1.36 16 2 N -1.02 -12.28 3.24 -121.76 -0.39 -12.68 16 3 C 0.13 1.39 5.28 -4.04 -0.02 1.37 16 4 C -0.05 -0.47 6.02 -29.52 -0.18 -0.65 16 5 C 0.21 2.58 15.43 -20.76 -0.32 2.26 16 6 N -0.44 -6.53 18.54 42.15 0.78 -5.75 16 7 S 2.77 49.65 5.97 -107.50 -0.64 49.01 16 8 O -0.96 -20.85 16.08 -57.17 -0.92 -21.77 16 9 O -0.96 -18.43 15.26 -57.17 -0.87 -19.30 16 10 N -0.98 -18.17 2.84 -116.95 -0.33 -18.50 16 11 C 0.22 4.80 4.19 -5.19 -0.02 4.78 16 12 C -0.52 -13.83 8.83 -34.44 -0.30 -14.14 16 13 H 0.08 2.36 7.27 -52.48 -0.38 1.98 16 14 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 16 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 20 C 0.19 2.99 5.68 -5.19 -0.03 2.96 16 21 C 0.11 2.06 5.58 -82.58 -0.46 1.60 16 22 C -0.12 -2.10 8.62 -39.44 -0.34 -2.44 16 23 C -0.08 -1.31 10.18 -39.28 -0.40 -1.71 16 24 C -0.18 -2.74 10.11 -39.44 -0.40 -3.14 16 25 C 0.08 1.42 11.18 -17.55 -0.20 1.23 16 26 N -0.46 -8.83 9.82 -9.47 -0.09 -8.92 16 27 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 29 H 0.08 0.80 7.02 -51.93 -0.36 0.44 16 30 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 31 H 0.09 1.20 7.32 -51.93 -0.38 0.82 16 32 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.71 6.38 -51.93 -0.33 0.38 16 35 H 0.03 0.57 7.43 -51.93 -0.39 0.18 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.08 1.16 7.61 -51.93 -0.40 0.77 16 38 H 0.09 1.16 7.90 -51.93 -0.41 0.75 16 39 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 42 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -36.41 373.27 -8.49 -44.90 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.62 Total: 1.95 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.13 Total: -4.54 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: 0.73 Total: -71.41 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.79 Total: -41.07 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Atomic # 16 Polarization: 49.65 SS G_CDS: -0.64 Total: 49.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.41 -8.49 -44.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078760054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.883 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds