Wall clock time and date at job start Tue Mar 31 2020 20:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99631 * 2 1 4 4 C 1.53000 * 109.46717 * 274.99620 * 3 2 1 5 5 C 1.47205 * 109.47477 * 180.02562 * 4 3 2 6 6 N 4.80466 * 117.01615 * 340.38032 * 2 1 3 7 7 S 1.65593 * 119.99960 * 179.97438 * 2 1 3 8 8 O 1.42105 * 106.40078 * 156.45760 * 7 2 1 9 9 O 1.42104 * 106.40454 * 23.54464 * 7 2 1 10 10 N 1.65598 * 107.22188 * 269.99874 * 7 2 1 11 11 C 1.46497 * 120.00244 * 270.00248 * 10 7 2 12 12 C 1.50703 * 109.47124 * 265.00133 * 11 10 7 13 13 H 1.08004 * 119.99979 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99921 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00008 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00441 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47139 * 89.99942 * 16 14 12 18 18 H 1.48496 * 109.47263 * 210.00571 * 16 14 12 19 19 H 1.48504 * 109.46756 * 330.00236 * 16 14 12 20 20 C 1.46504 * 119.99436 * 90.00261 * 10 7 2 21 21 C 1.50707 * 109.46935 * 95.00474 * 20 10 7 22 22 C 1.38227 * 119.62059 * 95.01845 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99275 * 21 20 10 27 27 H 1.09010 * 109.47059 * 270.00162 * 1 2 3 28 28 H 1.08993 * 109.47462 * 30.00071 * 1 2 3 29 29 H 1.09004 * 109.47333 * 150.00736 * 1 2 3 30 30 H 1.08993 * 109.47595 * 34.99533 * 3 2 1 31 31 H 1.08998 * 109.47145 * 155.00193 * 3 2 1 32 32 H 1.09001 * 109.47633 * 300.00195 * 4 3 2 33 33 H 1.09000 * 109.47572 * 60.00259 * 4 3 2 34 34 H 1.08999 * 109.47232 * 24.99515 * 11 10 7 35 35 H 1.08992 * 109.47302 * 145.00348 * 11 10 7 36 36 H 0.96996 * 120.00260 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47679 * 334.99942 * 20 10 7 38 38 H 1.09003 * 109.46652 * 214.99902 * 20 10 7 39 39 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 40 40 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 41 41 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 42 42 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3435 1.7732 -1.4371 5 6 3.0800 3.0478 -1.4373 6 7 3.6475 4.0319 -1.4372 7 16 2.2930 -1.4341 0.0006 8 8 3.5759 -1.1569 -0.5440 9 8 1.4114 -2.4067 -0.5435 10 7 2.5381 -1.8580 1.5826 11 6 3.7453 -1.4111 2.2820 12 6 4.7975 -2.4873 2.2058 13 1 4.5878 -3.4118 1.6884 14 6 6.0274 -2.2920 2.7974 15 7 6.9459 -3.2310 2.7304 16 14 6.3899 -0.6932 3.6929 17 1 6.0020 -0.8264 5.1201 18 1 7.8410 -0.3920 3.6003 19 1 5.6147 0.4097 3.0700 20 6 1.5478 -2.6799 2.2825 21 6 1.9538 -4.1292 2.2065 22 6 2.6718 -4.6929 3.2444 23 6 3.0356 -6.0284 3.1669 24 6 2.6708 -6.7475 2.0388 25 6 1.9526 -6.1163 1.0411 26 7 1.6196 -4.8449 1.1507 27 1 -0.3634 0.0000 1.0278 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8901 -0.5137 30 1 1.6501 2.0043 0.5893 31 1 3.1857 1.1178 0.4343 32 1 2.8909 1.0376 -2.0265 33 1 1.3553 1.9242 -1.8715 34 1 4.1212 -0.5017 1.8133 35 1 3.5066 -1.2098 3.3263 36 1 7.8113 -3.0935 3.1463 37 1 0.5720 -2.5508 1.8141 38 1 1.4931 -2.3722 3.3268 39 1 2.9428 -4.1014 4.1064 40 1 3.5935 -6.4965 3.9645 41 1 2.9404 -7.7889 1.9432 42 1 1.6611 -6.6705 0.1612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078760054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:31 Heat of formation + Delta-G solvation = -22.153702 kcal Electronic energy + Delta-G solvation = -28194.599381 eV Core-core repulsion = 24301.367378 eV Total energy + Delta-G solvation = -3893.232004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91402 -38.48506 -38.11453 -37.40456 -36.98434 -36.65077 -34.55363 -33.19325 -32.41547 -32.21581 -29.86947 -27.41920 -26.88519 -24.38292 -24.28915 -23.77521 -22.73721 -19.89096 -19.10426 -18.73345 -18.61423 -18.02823 -17.61847 -17.30025 -16.83950 -16.47663 -16.32015 -15.89494 -15.65676 -15.20628 -15.07939 -14.75235 -14.48675 -14.29066 -14.11095 -14.03061 -13.89563 -13.84495 -13.59325 -13.36154 -13.27001 -13.21667 -12.84096 -12.79985 -12.76203 -12.62233 -12.35674 -12.25532 -12.13190 -11.99650 -11.75860 -11.62119 -10.69789 -10.59362 -10.29602 -10.07563 -9.84544 -9.61807 -8.19108 -6.21403 -0.34102 0.37881 0.57828 1.37626 1.43012 1.49561 1.71395 1.80100 2.09415 2.39638 2.61392 3.05652 3.12518 3.15952 3.51153 3.56540 3.85968 3.93661 4.05826 4.10068 4.17534 4.32914 4.39798 4.45516 4.52306 4.65113 4.76024 4.77013 4.85331 4.89541 4.93842 5.01584 5.02832 5.13452 5.20239 5.28678 5.42985 5.47613 5.56594 5.59457 5.88260 5.97967 6.40795 6.57019 6.82298 7.26560 7.39555 8.97624 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010269 B = 0.005571 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.111343 B = 5025.096076 C = 7026.678400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -1.000 6.000 3 C 0.122 3.878 4 C -0.047 4.047 5 C 0.241 3.759 6 N -0.492 5.492 7 S 2.778 3.222 8 O -1.008 7.008 9 O -0.979 6.979 10 N -0.986 5.986 11 C 0.229 3.771 12 C -0.514 4.514 13 H 0.030 0.970 14 C 0.013 3.987 15 N -0.947 5.947 16 Si 0.929 3.071 17 H -0.254 1.254 18 H -0.296 1.296 19 H -0.241 1.241 20 C 0.180 3.820 21 C 0.092 3.908 22 C -0.136 4.136 23 C -0.094 4.094 24 C -0.174 4.174 25 C 0.067 3.933 26 N -0.489 5.489 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.158 0.842 34 H 0.034 0.966 35 H 0.058 0.942 36 H 0.262 0.738 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.107 3.928 0.330 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.842 5.842 3 C -0.005 4.005 4 C -0.089 4.089 5 C -0.076 4.076 6 N -0.171 5.171 7 S 2.788 3.212 8 O -0.991 6.991 9 O -0.963 6.963 10 N -0.824 5.824 11 C 0.105 3.895 12 C -0.554 4.554 13 H 0.048 0.952 14 C -0.185 4.185 15 N -0.588 5.588 16 Si 0.753 3.247 17 H -0.178 1.178 18 H -0.223 1.223 19 H -0.164 1.164 20 C 0.054 3.946 21 C -0.047 4.047 22 C -0.157 4.157 23 C -0.120 4.120 24 C -0.194 4.194 25 C -0.090 4.090 26 N -0.199 5.199 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.176 0.824 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.331 5.297 -1.048 18.153 hybrid contribution 1.571 -0.601 1.158 2.042 sum -15.760 4.696 0.110 16.445 Atomic orbital electron populations 1.21929 0.75911 1.05369 1.03854 1.57782 1.16748 1.20261 1.89364 1.21278 0.97627 0.86186 0.95394 1.19982 1.02014 0.86334 1.00548 1.29315 0.92351 0.94108 0.91821 1.81254 1.11430 1.14405 1.09962 1.02026 0.72452 0.73485 0.73277 1.93573 1.42419 1.85622 1.77518 1.93597 1.67018 1.58640 1.77015 1.57594 1.29427 1.63198 1.32160 1.19325 0.81754 0.94043 0.94396 1.21538 0.97975 1.02252 1.33592 0.95163 1.25730 0.95783 0.99705 0.97257 1.70073 1.06066 1.35928 1.46751 0.85999 0.77605 0.80919 0.80224 1.17827 1.22290 1.16409 1.20212 0.90675 0.83275 1.00461 1.21924 0.95540 0.97488 0.89753 1.22057 0.97074 0.95839 1.00725 1.21840 0.96916 0.94478 0.98757 1.22386 0.99654 1.02595 0.94753 1.23123 0.95864 0.90841 0.99158 1.67580 1.21225 1.07705 1.23350 0.90823 0.87036 0.90858 0.85566 0.91416 0.87519 0.82442 0.94769 0.92396 0.92929 0.87586 0.86385 0.84657 0.83779 0.82450 0.81291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.68 127.77 1.36 2.31 16 2 N -1.00 -21.16 3.24 -539.13 -1.75 -22.90 16 3 C 0.12 2.23 5.28 86.38 0.46 2.68 16 4 C -0.05 -0.74 6.02 28.79 0.17 -0.57 16 5 C 0.24 5.31 15.43 89.44 1.38 6.69 16 6 N -0.49 -14.13 18.54 20.01 0.37 -13.75 16 7 S 2.78 97.43 5.97 -56.49 -0.34 97.09 16 8 O -1.01 -44.52 16.08 -128.00 -2.06 -46.58 16 9 O -0.98 -37.25 15.26 -128.00 -1.95 -39.20 16 10 N -0.99 -35.41 2.84 -523.91 -1.49 -36.90 16 11 C 0.23 9.54 4.19 85.63 0.36 9.90 16 12 C -0.51 -27.65 8.83 25.60 0.23 -27.43 16 13 H 0.03 1.89 7.27 -2.91 -0.02 1.87 16 14 C 0.01 0.70 5.47 84.65 0.46 1.16 16 15 N -0.95 -57.90 13.96 21.45 0.30 -57.60 16 16 Si 0.93 41.14 27.47 68.60 1.88 43.02 16 17 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 18 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 19 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 20 C 0.18 5.49 5.68 85.63 0.49 5.97 16 21 C 0.09 3.40 5.58 42.55 0.24 3.64 16 22 C -0.14 -4.91 8.62 22.36 0.19 -4.72 16 23 C -0.09 -3.12 10.18 22.47 0.23 -2.89 16 24 C -0.17 -5.35 10.11 22.36 0.23 -5.13 16 25 C 0.07 2.26 11.18 84.67 0.95 3.21 16 26 N -0.49 -18.90 9.82 -183.88 -1.81 -20.70 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.11 0.61 8.07 -2.39 -0.02 0.59 16 29 H 0.07 1.17 7.02 -2.38 -0.02 1.15 16 30 H 0.13 1.35 8.11 -2.39 -0.02 1.33 16 31 H 0.07 1.62 7.32 -2.39 -0.02 1.60 16 32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.16 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.03 1.43 6.38 -2.39 -0.02 1.42 16 35 H 0.06 2.10 7.43 -2.39 -0.02 2.08 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.11 2.72 7.61 -2.39 -0.02 2.70 16 38 H 0.12 2.80 7.90 -2.39 -0.02 2.78 16 39 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 41 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.17 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -84.51 373.27 0.88 -83.63 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.98 Total: 19.07 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 6.74 Total: -5.17 kcal Atomic # 7 Polarization: -147.49 SS G_CDS: -4.37 Total: -151.86 kcal Atomic # 8 Polarization: -81.77 SS G_CDS: -4.01 Total: -85.78 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.02 kcal Atomic # 16 Polarization: 97.43 SS G_CDS: -0.34 Total: 97.09 kcal Total: -84.51 0.88 -83.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078760054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.478 kcal (2) G-P(sol) polarization free energy of solvation -84.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds