Wall clock time and date at job start Tue Mar 31 2020 20:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.50703 * 109.47349 * 89.99630 * 3 2 1 5 5 H 1.08007 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00296 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00149 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00169 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47250 * 89.99298 * 8 6 4 10 10 H 1.48490 * 109.47435 * 209.99746 * 8 6 4 11 11 H 1.48498 * 109.47118 * 330.00059 * 8 6 4 12 12 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00031 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99563 * 0.02562 * 12 2 1 15 15 H 1.09001 * 110.85914 * 59.29805 * 14 12 2 16 16 C 1.54627 * 110.96884 * 295.50135 * 14 12 2 17 17 C 1.51279 * 104.19985 * 266.68029 * 16 14 12 18 18 O 1.21295 * 124.94253 * 163.71087 * 17 16 14 19 19 N 1.34419 * 110.11374 * 343.74943 * 17 16 14 20 20 C 1.40167 * 124.34895 * 179.58113 * 19 17 16 21 21 C 1.38984 * 120.08977 * 269.75200 * 20 19 17 22 22 F 1.35100 * 120.03985 * 359.97438 * 21 20 19 23 23 C 1.38344 * 119.91414 * 179.70160 * 21 20 19 24 24 C 1.38269 * 120.08491 * 0.57151 * 23 21 20 25 25 C 1.38267 * 120.17227 * 359.72856 * 24 23 21 26 26 C 1.38349 * 120.08366 * 359.97211 * 25 24 23 27 27 F 1.35097 * 120.03882 * 180.02562 * 26 25 24 28 28 C 1.46865 * 111.31317 * 359.58625 * 19 17 16 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 0.96993 * 120.00222 * 180.02562 * 7 6 4 35 35 H 1.09000 * 110.48892 * 25.36444 * 16 14 12 36 36 H 1.09007 * 110.48260 * 148.00098 * 16 14 12 37 37 H 1.08003 * 119.95845 * 180.32157 * 23 21 20 38 38 H 1.07994 * 119.91252 * 179.74338 * 24 23 21 39 39 H 1.07994 * 119.95707 * 180.02562 * 25 24 23 40 40 H 1.09002 * 110.25598 * 258.04560 * 28 19 17 41 41 H 1.08997 * 110.27997 * 136.00775 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0980 1.0958 2.2418 6 6 3.1260 2.8780 1.6728 7 7 3.5534 3.6181 0.6732 8 14 3.4379 3.4169 3.4340 9 1 4.7333 2.8601 3.9000 10 1 3.4851 4.8997 3.4969 11 1 2.3432 2.9191 4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.7413 -2.5485 -0.8755 16 6 0.5699 -2.6403 1.3034 17 6 1.4900 -3.4165 2.2197 18 8 1.3519 -3.5168 3.4205 19 7 2.4834 -3.9783 1.5094 20 6 3.5089 -4.7571 2.0629 21 6 4.6888 -4.1567 2.4860 22 9 4.8495 -2.8208 2.3640 23 6 5.6962 -4.9280 3.0375 24 6 5.5351 -6.2960 3.1572 25 6 4.3653 -6.8979 2.7317 26 6 3.3508 -6.1325 2.1848 27 9 2.2079 -6.7214 1.7698 28 6 2.3564 -3.6713 0.0788 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 4.0302 4.4439 0.8504 35 1 0.3344 -1.6672 1.7344 36 1 -0.3429 -3.2047 1.1120 37 1 6.6113 -4.4615 3.3714 38 1 6.3250 -6.8960 3.5843 39 1 4.2430 -7.9666 2.8271 40 1 1.9432 -4.5267 -0.4556 41 1 3.3265 -3.3987 -0.3367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271241469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:35 Heat of formation + Delta-G solvation = -139.087520 kcal Electronic energy + Delta-G solvation = -30269.492533 eV Core-core repulsion = 25785.056761 eV Total energy + Delta-G solvation = -4484.435772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.13997 -50.11063 -42.22741 -40.39930 -39.53344 -37.55268 -36.61580 -34.97028 -34.17144 -31.43677 -30.69944 -29.52620 -28.88270 -27.37503 -25.77900 -24.39993 -24.01828 -23.28135 -21.27796 -20.11126 -19.33267 -18.76545 -18.68826 -18.60246 -18.14414 -17.31499 -17.11081 -16.77923 -16.57572 -16.45980 -16.43813 -16.34154 -15.98939 -15.80473 -15.45923 -14.94102 -14.68031 -14.48652 -14.32030 -13.90067 -13.76144 -13.55825 -13.45261 -13.11180 -13.09850 -13.04799 -13.01142 -12.81023 -12.71298 -12.58321 -12.46990 -12.23779 -11.73941 -11.29608 -10.69076 -10.61261 -10.21159 -10.04748 -9.89470 -9.43993 -8.27334 -6.40717 -0.27159 -0.16067 1.24014 1.28975 1.32281 1.41579 1.68364 1.74370 2.20576 2.26084 2.38534 2.68176 3.02157 3.12765 3.30462 3.31770 3.55753 3.69937 3.74572 3.77605 4.09093 4.17634 4.26881 4.44506 4.49784 4.57725 4.64770 4.69312 4.71723 4.77184 4.88300 4.94305 4.98698 5.05688 5.07713 5.20173 5.29552 5.52467 5.67896 5.77619 5.81352 6.02729 6.65282 6.75798 6.86332 7.24496 7.44301 8.79339 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.004061 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.200756 B = 6892.569217 C = 7930.813064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.606 5.606 3 C 0.262 3.738 4 C -0.541 4.541 5 H 0.042 0.958 6 C 0.014 3.986 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.285 1.285 10 H -0.266 1.266 11 H -0.268 1.268 12 C 0.495 3.505 13 O -0.585 6.585 14 C -0.105 4.105 15 H 0.184 0.816 16 C -0.133 4.133 17 C 0.509 3.491 18 O -0.570 6.570 19 N -0.575 5.575 20 C 0.042 3.958 21 C 0.094 3.906 22 F -0.146 7.146 23 C -0.159 4.159 24 C -0.036 4.036 25 C -0.145 4.145 26 C 0.122 3.878 27 F -0.128 7.128 28 C 0.118 3.882 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.073 0.927 32 H -0.002 1.002 33 H 0.029 0.971 34 H 0.268 0.732 35 H 0.103 0.897 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.198 0.802 39 H 0.186 0.814 40 H 0.130 0.870 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -24.402 -1.429 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.337 5.337 3 C 0.140 3.860 4 C -0.580 4.580 5 H 0.060 0.940 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.780 3.220 9 H -0.211 1.211 10 H -0.191 1.191 11 H -0.192 1.192 12 C 0.283 3.717 13 O -0.466 6.466 14 C -0.126 4.126 15 H 0.201 0.799 16 C -0.173 4.173 17 C 0.300 3.700 18 O -0.449 6.449 19 N -0.305 5.305 20 C -0.050 4.050 21 C 0.074 3.926 22 F -0.125 7.125 23 C -0.178 4.178 24 C -0.053 4.053 25 C -0.164 4.164 26 C 0.101 3.899 27 F -0.107 7.107 28 C -0.003 4.003 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.017 0.983 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.190 0.810 37 H 0.181 0.819 38 H 0.215 0.785 39 H 0.204 0.796 40 H 0.148 0.852 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.199 -24.232 -0.880 24.458 hybrid contribution 0.429 1.517 0.783 1.761 sum -2.771 -22.714 -0.097 22.883 Atomic orbital electron populations 1.22107 0.77591 1.04815 1.02334 1.48106 1.08560 1.06130 1.70923 1.18742 0.91292 0.80486 0.95451 1.21658 1.36802 1.06326 0.93229 0.93971 1.25709 0.94979 0.96490 1.01385 1.70013 1.38876 1.14844 1.32596 0.85599 0.78400 0.77974 0.79980 1.21089 1.19099 1.19247 1.21049 0.87804 0.86452 0.76381 1.90680 1.16424 1.87753 1.51720 1.22422 0.97679 0.90221 1.02326 0.79854 1.22538 0.99343 1.02652 0.92753 1.21857 0.82065 0.78215 0.87844 1.90676 1.75474 1.62996 1.15771 1.45601 1.24425 1.50464 1.10040 1.17734 0.89985 0.90345 1.06963 1.18497 0.95619 0.77811 1.00711 1.91595 1.95681 1.31530 1.93672 1.21614 0.99050 0.95617 1.01522 1.21488 0.97424 0.92331 0.94077 1.21646 0.92111 1.02699 0.99939 1.17870 0.84380 0.88464 0.99143 1.91499 1.47974 1.83376 1.87810 1.22392 1.01359 0.97689 0.78864 0.92757 0.86857 0.90860 0.98338 0.95272 0.92309 0.87870 0.81018 0.81886 0.78522 0.79647 0.85221 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 9.12 127.77 1.17 3.16 16 2 N -0.61 -24.98 2.84 -851.13 -2.42 -27.40 16 3 C 0.26 14.21 5.20 85.63 0.45 14.65 16 4 C -0.54 -32.47 9.39 25.60 0.24 -32.23 16 5 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 6 C 0.01 0.82 5.46 84.65 0.46 1.28 16 7 N -0.92 -56.92 13.29 21.45 0.28 -56.63 16 8 Si 0.96 47.40 29.54 68.60 2.03 49.43 16 9 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.50 19.85 7.04 87.66 0.62 20.47 16 13 O -0.59 -30.25 15.09 -3.02 -0.05 -30.29 16 14 C -0.11 -2.59 2.55 -10.48 -0.03 -2.62 16 15 H 0.18 2.31 7.41 -2.39 -0.02 2.29 16 16 C -0.13 -3.28 5.67 30.59 0.17 -3.11 16 17 C 0.51 18.00 7.99 87.90 0.70 18.71 16 18 O -0.57 -24.93 17.71 -3.08 -0.05 -24.99 16 19 N -0.58 -18.58 2.62 -627.00 -1.65 -20.23 16 20 C 0.04 1.31 5.40 38.17 0.21 1.51 16 21 C 0.09 3.08 7.31 22.47 0.16 3.25 16 22 F -0.15 -6.38 17.08 44.97 0.77 -5.61 16 23 C -0.16 -3.41 10.02 22.30 0.22 -3.19 16 24 C -0.04 -0.46 10.04 22.28 0.22 -0.24 16 25 C -0.15 -2.15 10.02 22.30 0.22 -1.93 16 26 C 0.12 2.90 7.31 22.48 0.16 3.07 16 27 F -0.13 -3.04 17.08 44.97 0.77 -2.27 16 28 C 0.12 3.02 6.65 86.81 0.58 3.60 16 29 H 0.05 1.48 7.08 -2.39 -0.02 1.46 16 30 H 0.11 1.81 6.29 -2.39 -0.01 1.79 16 31 H 0.07 1.96 7.89 -2.38 -0.02 1.94 16 32 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 33 H 0.03 1.58 7.89 -2.39 -0.02 1.56 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.10 2.94 5.83 -2.39 -0.01 2.92 16 36 H 0.17 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.20 0.62 8.06 -2.91 -0.02 0.60 16 39 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.36 6.98 -2.39 -0.02 2.35 16 Total: -1.00 -94.86 359.10 6.33 -88.53 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 1.08 Total: 3.09 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 5.56 Total: 26.38 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -3.78 Total: -104.26 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.10 Total: -55.28 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.54 Total: -7.88 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -94.86 6.33 -88.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271241469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.556 kcal (2) G-P(sol) polarization free energy of solvation -94.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds