Wall clock time and date at job start Tue Mar 31 2020 20:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00254 * 2 1 4 4 C 1.50693 * 109.47240 * 270.00400 * 3 2 1 5 5 C 1.38266 * 119.99437 * 269.72144 * 4 3 2 6 6 C 1.38224 * 120.02788 * 179.76892 * 5 4 3 7 7 C 1.38237 * 120.00807 * 0.50527 * 6 5 4 8 8 C 1.38323 * 119.99068 * 359.75199 * 7 6 5 9 9 Cl 1.73602 * 120.01429 * 180.02562 * 8 7 6 10 10 C 1.38197 * 119.99424 * 89.99516 * 4 3 2 11 11 C 1.34777 * 119.99928 * 180.02562 * 2 1 3 12 12 O 1.21354 * 120.00030 * 183.64041 * 11 2 1 13 13 C 1.49450 * 120.00258 * 3.91271 * 11 2 1 14 14 O 1.21348 * 119.99535 * 353.88884 * 13 11 2 15 15 N 1.34774 * 120.00334 * 173.89027 * 13 11 2 16 16 C 1.46501 * 120.00111 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.46867 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46977 * 179.97438 * 17 16 15 19 19 C 1.50690 * 109.47157 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00664 * 0.02562 * 19 18 17 21 21 C 1.37886 * 120.00042 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99976 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99725 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47114 * 90.00227 * 23 21 19 25 25 H 1.48505 * 109.47204 * 209.99922 * 23 21 19 26 26 H 1.48498 * 109.47645 * 330.00200 * 23 21 19 27 27 H 1.08998 * 109.46965 * 263.98270 * 1 2 3 28 28 H 1.08997 * 109.47008 * 23.98849 * 1 2 3 29 29 H 1.09001 * 109.47223 * 143.99061 * 1 2 3 30 30 H 1.09003 * 109.46695 * 30.00417 * 3 2 1 31 31 H 1.08995 * 109.47144 * 150.00170 * 3 2 1 32 32 H 1.07995 * 119.98502 * 0.02562 * 5 4 3 33 33 H 1.07992 * 119.99120 * 180.25411 * 6 5 4 34 34 H 1.08002 * 120.00287 * 179.76553 * 7 6 5 35 35 H 1.07998 * 120.00702 * 359.95964 * 10 4 3 36 36 H 0.96999 * 119.99914 * 0.02562 * 15 13 11 37 37 H 1.08997 * 109.46956 * 299.99814 * 16 15 13 38 38 H 1.08998 * 109.46815 * 60.00133 * 16 15 13 39 39 H 1.08997 * 109.47238 * 299.99712 * 17 16 15 40 40 H 1.08998 * 109.47236 * 60.00462 * 17 16 15 41 41 H 1.09002 * 109.46956 * 300.00483 * 18 17 16 42 42 H 1.09003 * 109.46566 * 59.99771 * 18 17 16 43 43 H 0.97001 * 120.00093 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 6 3.6036 1.3093 -2.0706 6 6 3.8324 1.7041 -3.3753 7 6 2.9113 2.5022 -4.0278 8 6 1.7582 2.9015 -3.3765 9 17 0.6009 3.9033 -4.1954 10 6 1.5272 2.5017 -2.0720 11 6 2.1388 -1.1672 -0.0005 12 8 3.3505 -1.1683 0.0662 13 6 1.3942 -2.4600 -0.0894 14 8 0.1814 -2.4655 -0.0493 15 7 2.0697 -3.6195 -0.2141 16 6 1.3398 -4.8868 -0.3007 17 6 2.3354 -6.0406 -0.4363 18 6 1.5731 -7.3641 -0.5261 19 6 2.5537 -8.5004 -0.6603 20 1 3.6146 -8.2990 -0.6793 21 6 2.0966 -9.7976 -0.7590 22 7 2.9524 -10.7893 -0.8756 23 14 0.2617 -10.1461 -0.7269 24 1 -0.2721 -10.1157 -2.1123 25 1 0.0227 -11.4864 -0.1337 26 1 -0.4242 -9.1135 0.0906 27 1 -0.3633 -0.1077 1.0220 28 1 -0.3633 0.9389 -0.4178 29 1 -0.3634 -0.8313 -0.6042 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.3253 0.6891 -1.5598 33 1 4.7327 1.3922 -3.8837 34 1 3.0920 2.8137 -5.0460 35 1 0.6269 2.8129 -1.5631 36 1 3.0391 -3.6151 -0.2458 37 1 0.7436 -5.0250 0.6013 38 1 0.6836 -4.8694 -1.1709 39 1 2.9313 -5.9021 -1.3385 40 1 2.9919 -6.0581 0.4336 41 1 0.9775 -7.5023 0.3763 42 1 0.9163 -7.3468 -1.3958 43 1 2.6309 -11.7018 -0.9446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286766902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:20 Heat of formation + Delta-G solvation = -50.163186 kcal Electronic energy + Delta-G solvation = -25705.667079 eV Core-core repulsion = 21776.884035 eV Total energy + Delta-G solvation = -3928.783044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03397 -39.79844 -38.54918 -36.95742 -36.43072 -35.44780 -33.36615 -32.28286 -31.50766 -31.17636 -28.03003 -27.69304 -26.65200 -24.14841 -23.11819 -22.52824 -21.57526 -20.75262 -19.70083 -17.85228 -17.61811 -17.14374 -16.73759 -16.43494 -15.96770 -15.86226 -15.75804 -15.14977 -14.93476 -14.28370 -14.23926 -14.08711 -13.93154 -13.72656 -13.36323 -13.17478 -12.81821 -12.72391 -12.55964 -12.12791 -12.04592 -11.99391 -11.88186 -11.72631 -11.41393 -11.28757 -11.13533 -10.93776 -10.16722 -9.99200 -9.79331 -9.61693 -9.32325 -9.26027 -9.22256 -9.09227 -8.99295 -8.57901 -6.08252 -4.07290 0.65843 0.77259 1.31552 1.69739 2.20548 3.08144 3.15971 3.29063 3.36862 3.40072 3.45716 4.19164 4.23756 4.35083 4.41964 4.56756 4.70895 4.81205 4.90243 4.96971 5.14871 5.25002 5.25367 5.38493 5.40953 5.42867 5.53805 5.67907 5.73752 5.89970 5.90594 5.92845 6.04723 6.19453 6.33327 6.36117 6.52794 6.70645 6.72103 7.16934 7.20107 7.31191 7.58883 7.72961 7.94687 8.47978 8.95792 9.53477 11.04917 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017601 B = 0.001921 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.473626 B =14568.786273 C =14697.822023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.585 5.585 3 C 0.152 3.848 4 C -0.098 4.098 5 C -0.091 4.091 6 C -0.108 4.108 7 C -0.106 4.106 8 C -0.038 4.038 9 Cl -0.072 7.072 10 C -0.096 4.096 11 C 0.509 3.491 12 O -0.519 6.519 13 C 0.502 3.498 14 O -0.520 6.520 15 N -0.690 5.690 16 C 0.112 3.888 17 C -0.115 4.115 18 C -0.010 4.010 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.902 5.902 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.265 1.265 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.412 0.588 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 32.440 -1.991 32.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.319 5.319 3 C 0.030 3.970 4 C -0.100 4.100 5 C -0.110 4.110 6 C -0.126 4.126 7 C -0.125 4.125 8 C -0.065 4.065 9 Cl -0.043 7.043 10 C -0.115 4.115 11 C 0.292 3.708 12 O -0.394 6.394 13 C 0.282 3.718 14 O -0.398 6.398 15 N -0.342 5.342 16 C -0.010 4.010 17 C -0.153 4.153 18 C -0.048 4.048 19 C -0.561 4.561 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.540 5.540 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.017 32.294 -1.992 32.495 hybrid contribution -0.639 -0.192 -0.203 0.698 sum -3.656 32.102 -2.194 32.384 Atomic orbital electron populations 1.22464 0.77287 1.04365 1.03718 1.47723 1.08332 1.04580 1.71242 1.20480 0.99239 0.84822 0.92471 1.20153 0.94743 0.98003 0.97076 1.21380 0.96984 0.97916 0.94698 1.21197 0.99362 0.97273 0.94780 1.21133 0.92751 0.98125 1.00497 1.20900 0.92868 0.98794 0.93904 1.98380 1.59010 1.67979 1.78909 1.20944 0.99582 0.98038 0.92948 1.20344 0.87524 0.85308 0.77644 1.90738 1.13392 1.87218 1.48064 1.19972 0.87692 0.85259 0.78882 1.90657 1.13317 1.86511 1.49308 1.46036 1.11758 1.05938 1.70447 1.21850 0.95793 0.81042 1.02352 1.21742 0.97635 0.93877 1.02064 1.19501 0.96403 0.92207 0.96700 1.21084 0.94477 0.89894 1.50642 0.90940 1.25038 0.97756 0.96251 0.94475 1.69910 1.34241 0.99518 1.50380 0.86771 0.86057 0.77706 0.78718 1.20248 1.21357 1.18916 0.91901 0.91728 0.87176 0.88750 0.88071 0.84559 0.84766 0.84882 0.84958 0.75187 0.91068 0.91118 0.91844 0.91783 0.96240 0.96696 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 9.56 59.85 0.57 1.11 16 2 N -0.59 -5.62 2.86 -183.47 -0.52 -6.15 16 3 C 0.15 1.13 5.53 -5.20 -0.03 1.10 16 4 C -0.10 -0.79 5.46 -104.63 -0.57 -1.36 16 5 C -0.09 -0.77 9.70 -39.58 -0.38 -1.16 16 6 C -0.11 -0.82 10.05 -39.59 -0.40 -1.21 16 7 C -0.11 -0.81 9.83 -39.55 -0.39 -1.19 16 8 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 9 Cl -0.07 -0.56 28.96 -51.86 -1.50 -2.06 16 10 C -0.10 -0.73 9.49 -39.55 -0.38 -1.10 16 11 C 0.51 6.21 7.73 -11.58 -0.09 6.12 16 12 O -0.52 -6.95 15.77 5.49 0.09 -6.87 16 13 C 0.50 6.88 7.77 -11.59 -0.09 6.79 16 14 O -0.52 -7.81 13.14 5.50 0.07 -7.74 16 15 N -0.69 -9.51 5.55 -60.73 -0.34 -9.85 16 16 C 0.11 1.74 5.67 -4.04 -0.02 1.71 16 17 C -0.12 -2.09 5.27 -26.73 -0.14 -2.23 16 18 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 19 C -0.52 -14.55 9.66 -34.44 -0.33 -14.89 16 20 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 23 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.39 8.03 -51.93 -0.42 -0.03 16 29 H 0.11 1.18 5.34 -51.94 -0.28 0.90 16 30 H 0.09 0.46 8.02 -51.93 -0.42 0.05 16 31 H 0.10 0.79 7.32 -51.93 -0.38 0.41 16 32 H 0.14 1.20 7.78 -52.49 -0.41 0.79 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.41 5.22 7.96 -40.82 -0.32 4.90 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 42 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -31.92 380.40 -9.03 -40.95 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.96 Total: 1.37 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.71 Total: -5.40 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.09 Total: -42.74 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.16 Total: -14.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.92 -9.03 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286766902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.208 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds