Wall clock time and date at job start Tue Mar 31 2020 20:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00254 * 2 1 4 4 C 1.50693 * 109.47240 * 270.00400 * 3 2 1 5 5 C 1.38266 * 119.99437 * 269.72144 * 4 3 2 6 6 C 1.38224 * 120.02788 * 179.76892 * 5 4 3 7 7 C 1.38237 * 120.00807 * 0.50527 * 6 5 4 8 8 C 1.38323 * 119.99068 * 359.75199 * 7 6 5 9 9 Cl 1.73602 * 120.01429 * 180.02562 * 8 7 6 10 10 C 1.38197 * 119.99424 * 89.99516 * 4 3 2 11 11 C 1.34777 * 119.99928 * 180.02562 * 2 1 3 12 12 O 1.21354 * 120.00030 * 183.64041 * 11 2 1 13 13 C 1.49450 * 120.00258 * 3.91271 * 11 2 1 14 14 O 1.21348 * 119.99535 * 353.88884 * 13 11 2 15 15 N 1.34774 * 120.00334 * 173.89027 * 13 11 2 16 16 C 1.46501 * 120.00111 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.46867 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46977 * 179.97438 * 17 16 15 19 19 C 1.50690 * 109.47157 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00664 * 0.02562 * 19 18 17 21 21 C 1.37886 * 120.00042 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99976 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99725 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47114 * 90.00227 * 23 21 19 25 25 H 1.48505 * 109.47204 * 209.99922 * 23 21 19 26 26 H 1.48498 * 109.47645 * 330.00200 * 23 21 19 27 27 H 1.08998 * 109.46965 * 263.98270 * 1 2 3 28 28 H 1.08997 * 109.47008 * 23.98849 * 1 2 3 29 29 H 1.09001 * 109.47223 * 143.99061 * 1 2 3 30 30 H 1.09003 * 109.46695 * 30.00417 * 3 2 1 31 31 H 1.08995 * 109.47144 * 150.00170 * 3 2 1 32 32 H 1.07995 * 119.98502 * 0.02562 * 5 4 3 33 33 H 1.07992 * 119.99120 * 180.25411 * 6 5 4 34 34 H 1.08002 * 120.00287 * 179.76553 * 7 6 5 35 35 H 1.07998 * 120.00702 * 359.95964 * 10 4 3 36 36 H 0.96999 * 119.99914 * 0.02562 * 15 13 11 37 37 H 1.08997 * 109.46956 * 299.99814 * 16 15 13 38 38 H 1.08998 * 109.46815 * 60.00133 * 16 15 13 39 39 H 1.08997 * 109.47238 * 299.99712 * 17 16 15 40 40 H 1.08998 * 109.47236 * 60.00462 * 17 16 15 41 41 H 1.09002 * 109.46956 * 300.00483 * 18 17 16 42 42 H 1.09003 * 109.46566 * 59.99771 * 18 17 16 43 43 H 0.97001 * 120.00093 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 6 3.6036 1.3093 -2.0706 6 6 3.8324 1.7041 -3.3753 7 6 2.9113 2.5022 -4.0278 8 6 1.7582 2.9015 -3.3765 9 17 0.6009 3.9033 -4.1954 10 6 1.5272 2.5017 -2.0720 11 6 2.1388 -1.1672 -0.0005 12 8 3.3505 -1.1683 0.0662 13 6 1.3942 -2.4600 -0.0894 14 8 0.1814 -2.4655 -0.0493 15 7 2.0697 -3.6195 -0.2141 16 6 1.3398 -4.8868 -0.3007 17 6 2.3354 -6.0406 -0.4363 18 6 1.5731 -7.3641 -0.5261 19 6 2.5537 -8.5004 -0.6603 20 1 3.6146 -8.2990 -0.6793 21 6 2.0966 -9.7976 -0.7590 22 7 2.9524 -10.7893 -0.8756 23 14 0.2617 -10.1461 -0.7269 24 1 -0.2721 -10.1157 -2.1123 25 1 0.0227 -11.4864 -0.1337 26 1 -0.4242 -9.1135 0.0906 27 1 -0.3633 -0.1077 1.0220 28 1 -0.3633 0.9389 -0.4178 29 1 -0.3634 -0.8313 -0.6042 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.3253 0.6891 -1.5598 33 1 4.7327 1.3922 -3.8837 34 1 3.0920 2.8137 -5.0460 35 1 0.6269 2.8129 -1.5631 36 1 3.0391 -3.6151 -0.2458 37 1 0.7436 -5.0250 0.6013 38 1 0.6836 -4.8694 -1.1709 39 1 2.9313 -5.9021 -1.3385 40 1 2.9919 -6.0581 0.4336 41 1 0.9775 -7.5023 0.3763 42 1 0.9163 -7.3468 -1.3958 43 1 2.6309 -11.7018 -0.9446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286766902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:19 Heat of formation + Delta-G solvation = -69.474055 kcal Electronic energy + Delta-G solvation = -25706.504461 eV Core-core repulsion = 21776.884035 eV Total energy + Delta-G solvation = -3929.620426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95748 -40.49190 -39.49793 -37.64625 -37.37656 -36.58537 -35.13384 -33.30191 -32.90656 -31.74941 -29.42068 -28.46320 -27.65053 -25.42793 -23.73087 -23.68298 -22.40580 -22.23638 -20.81456 -19.06019 -18.63030 -18.30599 -17.94583 -17.32109 -16.87059 -16.61196 -16.55082 -16.28710 -16.18732 -15.76328 -15.22100 -15.00041 -14.77567 -14.75464 -14.39394 -14.23161 -13.89430 -13.80549 -13.62915 -13.48381 -13.16347 -12.75815 -12.71224 -12.68253 -12.47745 -12.31604 -12.25904 -11.89770 -11.86412 -11.76964 -11.60361 -11.33170 -10.75294 -10.54653 -10.30254 -9.97237 -9.86496 -9.71291 -8.28210 -6.32598 0.04944 0.19527 0.32907 1.11096 1.31427 1.38630 1.40275 1.51988 2.08497 2.37611 2.38852 2.71547 3.07459 3.28515 3.62006 3.78310 4.02029 4.02930 4.15457 4.17812 4.22400 4.30341 4.41311 4.48148 4.58469 4.67400 4.73299 4.80851 4.86816 4.89591 5.00016 5.03492 5.16841 5.18543 5.31816 5.34448 5.45482 5.47214 5.55592 5.65485 5.76197 5.86705 6.18641 6.28290 6.63997 6.75794 6.90487 7.32011 8.88287 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017601 B = 0.001921 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.473626 B =14568.786273 C =14697.822023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.576 5.576 3 C 0.151 3.849 4 C -0.103 4.103 5 C -0.105 4.105 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.049 4.049 9 Cl -0.071 7.071 10 C -0.096 4.096 11 C 0.508 3.492 12 O -0.537 6.537 13 C 0.500 3.500 14 O -0.533 6.533 15 N -0.690 5.690 16 C 0.126 3.874 17 C -0.104 4.104 18 C -0.010 4.010 19 C -0.532 4.532 20 H 0.034 0.966 21 C 0.001 3.999 22 N -0.951 5.951 23 Si 0.951 3.049 24 H -0.267 1.267 25 H -0.286 1.286 26 H -0.243 1.243 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.417 0.583 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 34.575 -1.862 34.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.308 5.308 3 C 0.030 3.970 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.131 4.131 7 C -0.130 4.130 8 C -0.076 4.076 9 Cl -0.042 7.042 10 C -0.115 4.115 11 C 0.290 3.710 12 O -0.414 6.414 13 C 0.281 3.719 14 O -0.412 6.412 15 N -0.342 5.342 16 C 0.003 3.997 17 C -0.142 4.142 18 C -0.048 4.048 19 C -0.570 4.570 20 H 0.053 0.947 21 C -0.195 4.195 22 N -0.592 5.592 23 Si 0.774 3.226 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.167 1.167 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.144 0.856 31 H 0.114 0.886 32 H 0.146 0.854 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.254 0.746 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.050 34.481 -1.862 34.898 hybrid contribution 0.076 -0.787 -0.273 0.837 sum -4.974 33.694 -2.135 34.126 Atomic orbital electron populations 1.22493 0.76388 1.05060 1.03890 1.47824 1.08951 1.04489 1.69566 1.20684 0.99504 0.84324 0.92515 1.20201 0.94735 0.98255 0.97295 1.21469 0.97357 0.98299 0.95257 1.21399 0.99988 0.97118 0.94608 1.21348 0.92604 0.97889 1.01174 1.21069 0.93119 0.99066 0.94330 1.98380 1.58968 1.67970 1.78930 1.21129 1.00010 0.97542 0.92815 1.20079 0.87232 0.85492 0.78195 1.90737 1.13895 1.87378 1.49388 1.20280 0.87609 0.85696 0.78288 1.90665 1.13882 1.86860 1.49756 1.45916 1.11989 1.05586 1.70702 1.21523 0.94838 0.80837 1.02505 1.21518 0.97713 0.92931 1.02079 1.19457 0.95741 0.92530 0.97121 1.21475 0.93923 0.91844 1.49795 0.94748 1.26045 1.03229 0.96055 0.94206 1.70069 1.36845 1.00112 1.52192 0.85652 0.79572 0.77948 0.79451 1.19216 1.21231 1.16658 0.91296 0.88832 0.89279 0.85557 0.88567 0.85380 0.83333 0.83606 0.83147 0.74617 0.90940 0.90943 0.91912 0.91894 0.95649 0.95808 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 9.56 127.77 1.22 2.13 16 2 N -0.58 -9.94 2.86 -852.74 -2.44 -12.38 16 3 C 0.15 1.90 5.53 85.63 0.47 2.37 16 4 C -0.10 -1.48 5.46 -19.87 -0.11 -1.58 16 5 C -0.11 -1.69 9.70 22.27 0.22 -1.47 16 6 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 7 C -0.11 -1.53 9.83 22.29 0.22 -1.31 16 8 C -0.05 -0.71 6.32 22.32 0.14 -0.57 16 9 Cl -0.07 -0.99 28.96 -2.72 -0.08 -1.07 16 10 C -0.10 -1.24 9.49 22.29 0.21 -1.03 16 11 C 0.51 11.82 7.73 87.27 0.67 12.49 16 12 O -0.54 -14.03 15.77 -3.26 -0.05 -14.09 16 13 C 0.50 13.14 7.77 87.27 0.68 13.82 16 14 O -0.53 -15.29 13.14 -3.24 -0.04 -15.33 16 15 N -0.69 -18.29 5.55 -464.42 -2.58 -20.87 16 16 C 0.13 3.72 5.67 86.38 0.49 4.21 16 17 C -0.10 -3.71 5.27 30.60 0.16 -3.55 16 18 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 19 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 20 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 21 C 0.00 0.08 5.47 84.66 0.46 0.54 16 22 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 23 Si 0.95 43.66 27.47 68.60 1.88 45.54 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 0.81 8.03 -2.39 -0.02 0.79 16 29 H 0.09 1.75 5.34 -2.53 -0.01 1.74 16 30 H 0.13 0.79 8.02 -2.39 -0.02 0.77 16 31 H 0.10 1.36 7.32 -2.39 -0.02 1.34 16 32 H 0.13 2.23 7.78 -2.91 -0.02 2.21 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.42 10.29 7.96 -92.71 -0.74 9.55 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 42 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -69.27 380.40 2.67 -66.60 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.24 Total: 16.21 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.43 Total: -5.48 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -4.71 Total: -92.39 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.09 Total: -29.42 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -69.27 2.67 -66.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286766902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.874 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds