Wall clock time and date at job start Tue Mar 31 2020 20:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47546 * 2 1 4 4 C 1.47011 * 110.99475 * 293.63406 * 3 2 1 5 5 C 1.53100 * 109.25803 * 177.60921 * 4 3 2 6 6 O 1.43017 * 109.26003 * 56.84308 * 5 4 3 7 7 C 1.43014 * 113.73821 * 301.33358 * 6 5 4 8 8 H 1.08994 * 109.50848 * 298.73501 * 7 6 5 9 9 C 1.50704 * 109.50455 * 178.60100 * 7 6 5 10 10 O 1.21271 * 120.00095 * 355.21935 * 9 7 6 11 11 N 1.34777 * 119.99842 * 175.21628 * 9 7 6 12 12 C 1.39265 * 119.99996 * 174.43312 * 11 9 7 13 13 C 1.39470 * 119.83852 * 335.08822 * 12 11 9 14 14 C 1.36367 * 120.18051 * 179.97438 * 13 12 11 15 15 C 1.40895 * 119.84981 * 0.02562 * 14 13 12 16 16 C 1.41153 * 120.15819 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99699 * 34.92897 * 16 15 14 18 18 C 1.39904 * 119.99713 * 214.92568 * 16 15 14 19 19 N 1.30872 * 120.00454 * 355.19307 * 18 16 15 20 20 Si 1.86800 * 119.99752 * 175.19030 * 18 16 15 21 21 H 1.48499 * 109.47302 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46855 * 119.99949 * 20 18 16 23 23 H 1.48493 * 109.47395 * 240.00132 * 20 18 16 24 24 C 1.40836 * 119.68173 * 359.97438 * 15 14 13 25 25 C 1.36482 * 119.81951 * 359.73876 * 24 15 14 26 26 Cl 1.73602 * 119.92773 * 180.27396 * 25 24 15 27 27 C 1.47014 * 111.00050 * 170.00017 * 3 2 1 28 28 H 1.08989 * 109.47441 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47213 * 300.00599 * 1 2 3 30 30 H 1.09005 * 109.46699 * 60.00004 * 1 2 3 31 31 H 1.08995 * 109.47222 * 239.99398 * 2 1 3 32 32 H 1.09008 * 109.46458 * 119.99540 * 2 1 3 33 33 H 1.09002 * 109.50646 * 297.54114 * 4 3 2 34 34 H 1.09001 * 109.50855 * 57.67224 * 4 3 2 35 35 H 1.09000 * 109.50463 * 296.91492 * 5 4 3 36 36 H 1.08996 * 109.50807 * 176.78165 * 5 4 3 37 37 H 0.97002 * 120.00293 * 354.43404 * 11 9 7 38 38 H 1.08000 * 119.90872 * 359.95981 * 13 12 11 39 39 H 1.07999 * 120.08065 * 179.97438 * 14 13 12 40 40 H 0.96996 * 119.99999 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.09319 * 180.02562 * 24 15 14 42 42 H 1.08998 * 109.49980 * 302.32059 * 27 3 2 43 43 H 1.08994 * 109.50904 * 62.45268 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6766 2.0650 -1.2574 5 6 2.1517 3.5189 -1.1911 6 8 3.5572 3.5444 -0.9278 7 6 3.9268 2.8914 0.2897 8 1 3.4490 3.3929 1.1313 9 6 5.4238 2.9445 0.4549 10 8 6.1149 3.4101 -0.4262 11 7 5.9945 2.4747 1.5819 12 6 7.3819 2.4165 1.6878 13 6 8.1628 2.3314 0.5354 14 6 9.5220 2.2746 0.6309 15 6 10.1376 2.3014 1.8980 16 6 11.5439 2.2423 2.0045 17 1 12.1624 2.7187 1.2583 18 6 12.1364 1.5668 3.0768 19 7 11.3900 1.0707 4.0305 20 14 13.9929 1.3727 3.1472 21 1 14.6036 2.0185 1.9576 22 1 14.5115 2.0171 4.3806 23 1 14.3396 -0.0711 3.1598 24 6 9.3431 2.3874 3.0577 25 6 7.9843 2.4495 2.9464 26 17 7.0026 2.5627 4.3737 27 6 3.4697 1.4311 0.2383 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.1663 1.5597 -2.0899 34 1 0.5964 2.0413 -1.4010 35 1 1.6224 4.0387 -0.3926 36 1 1.9507 4.0113 -2.1426 37 1 5.4389 2.1771 2.3192 38 1 7.6899 2.3103 -0.4353 39 1 10.1251 2.2083 -0.2625 40 1 11.8008 0.6020 4.7738 41 1 9.8081 2.4088 4.0323 42 1 3.6982 0.9446 1.1866 43 1 3.9881 0.9156 -0.5702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452642963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:20 Heat of formation + Delta-G solvation = -55.468774 kcal Electronic energy + Delta-G solvation = -26799.196926 eV Core-core repulsion = 22870.183815 eV Total energy + Delta-G solvation = -3929.013111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48735 -39.16417 -37.44465 -36.29949 -35.56461 -34.49597 -33.18289 -31.83150 -31.14894 -29.48223 -29.10631 -27.23168 -25.15718 -24.47378 -22.85623 -21.87548 -21.00583 -20.65765 -19.72014 -17.74736 -17.36388 -16.89989 -16.28311 -16.00241 -15.66607 -15.44422 -15.31170 -14.79287 -14.41867 -14.29057 -14.03562 -13.87511 -13.40078 -13.14907 -12.89592 -12.62504 -12.42462 -12.31350 -12.22597 -11.96524 -11.74139 -11.66992 -11.42271 -11.18810 -11.11687 -11.02046 -10.89310 -10.54045 -10.36997 -10.11150 -9.92395 -9.87457 -9.51065 -9.22471 -8.86128 -8.74179 -7.58735 -7.01295 -6.74527 -4.47402 2.26561 2.79300 2.91136 2.98358 3.05476 3.10278 3.15051 3.22271 3.46878 3.90020 4.08104 4.52309 4.55749 4.61973 4.65677 4.84317 4.87665 4.98556 5.03019 5.12620 5.18417 5.29328 5.38603 5.43421 5.50387 5.58527 5.60111 5.67659 5.86364 6.14796 6.46391 6.55078 6.57390 6.62157 6.84151 6.91353 6.96173 7.12944 7.28947 7.53655 7.62485 7.85132 8.03020 8.10857 8.41292 8.58274 8.75566 8.79026 10.16257 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020360 B = 0.002626 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.947562 B =10658.848823 C =11078.985759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.012 3.988 5 C 0.062 3.938 6 O -0.354 6.354 7 C 0.082 3.918 8 H 0.091 0.909 9 C 0.508 3.492 10 O -0.506 6.506 11 N -0.644 5.644 12 C 0.018 3.982 13 C -0.085 4.085 14 C -0.198 4.198 15 C 0.106 3.894 16 C -0.454 4.454 17 H 0.081 0.919 18 C 0.069 3.931 19 N -0.805 5.805 20 Si 0.918 3.082 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.274 1.274 24 C -0.133 4.133 25 C -0.025 4.025 26 Cl -0.119 7.119 27 C 0.029 3.971 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.280 0.720 41 H 0.145 0.855 42 H 0.093 0.907 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.959 -1.855 -3.795 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.261 5.261 4 C -0.116 4.116 5 C -0.015 4.015 6 O -0.271 6.271 7 C 0.020 3.980 8 H 0.108 0.892 9 C 0.293 3.707 10 O -0.380 6.380 11 N -0.289 5.289 12 C -0.076 4.076 13 C -0.105 4.105 14 C -0.218 4.218 15 C 0.102 3.898 16 C -0.485 4.485 17 H 0.100 0.900 18 C -0.147 4.147 19 N -0.432 5.432 20 Si 0.743 3.257 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.153 4.153 25 C -0.053 4.053 26 Cl -0.091 7.091 27 C -0.100 4.100 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.235 0.765 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.163 0.837 42 H 0.111 0.889 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.651 -1.312 -3.854 18.114 hybrid contribution 0.538 -0.982 0.198 1.137 sum -17.113 -2.294 -3.656 17.649 Atomic orbital electron populations 1.21793 0.94563 1.01720 1.02490 1.22122 0.96259 0.88206 1.01318 1.62269 1.13004 1.16598 1.34222 1.22893 1.01869 0.95959 0.90871 1.22738 0.81710 0.94959 1.02082 1.88142 1.22999 1.76592 1.39384 1.21898 0.93247 0.93197 0.89686 0.89158 1.19907 0.88652 0.79086 0.83097 1.90679 1.63230 1.43012 1.41102 1.42876 1.06255 1.62493 1.17281 1.16923 0.80895 1.17257 0.92477 1.20520 0.93694 0.99948 0.96300 1.20932 0.93262 1.10115 0.97470 1.17624 0.93686 0.88559 0.89889 1.19543 0.91469 1.29922 1.07537 0.90043 1.25928 1.00898 0.93808 0.94078 1.69739 1.37236 1.27894 1.08311 0.86091 0.81666 0.78747 0.79217 1.18467 1.19867 1.19884 1.21216 0.88958 1.03652 1.01489 1.20380 0.91902 1.09653 0.83368 1.98252 1.72014 1.97209 1.41615 1.22678 0.88198 0.96106 1.02982 0.92123 0.91700 0.92703 0.94576 0.90311 0.93669 0.89200 0.92066 0.87934 0.76536 0.85754 0.87804 0.90846 0.83738 0.88864 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.85 37.16 0.37 -0.60 16 2 C 0.05 0.40 5.68 -3.82 -0.02 0.38 16 3 N -0.54 -5.26 4.73 -234.30 -1.11 -6.36 16 4 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 5 C 0.06 0.62 7.01 37.21 0.26 0.88 16 6 O -0.35 -5.18 10.01 -55.07 -0.55 -5.73 16 7 C 0.08 1.12 3.22 -27.83 -0.09 1.03 16 8 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 9 C 0.51 9.04 6.98 -10.98 -0.08 8.96 16 10 O -0.51 -11.10 13.64 -14.27 -0.19 -11.29 16 11 N -0.64 -11.43 5.12 -9.71 -0.05 -11.48 16 12 C 0.02 0.39 6.44 -83.53 -0.54 -0.14 16 13 C -0.08 -1.96 8.63 -39.80 -0.34 -2.30 16 14 C -0.20 -4.78 9.74 -39.25 -0.38 -5.16 16 15 C 0.11 2.72 5.55 -106.80 -0.59 2.12 16 16 C -0.45 -11.61 9.02 -37.85 -0.34 -11.95 16 17 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 18 C 0.07 1.67 5.42 -17.34 -0.09 1.58 16 19 N -0.81 -20.08 10.59 55.55 0.59 -19.49 16 20 Si 0.92 18.33 29.56 -169.99 -5.03 13.30 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.13 -3.31 8.38 -39.23 -0.33 -3.64 16 25 C -0.02 -0.56 6.30 -39.72 -0.25 -0.81 16 26 Cl -0.12 -2.25 27.75 -51.86 -1.44 -3.68 16 27 C 0.03 0.34 4.88 -3.71 -0.02 0.32 16 28 H 0.06 0.33 8.14 -51.94 -0.42 -0.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.34 6.52 -51.93 -0.34 0.00 16 31 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.08 0.62 8.04 -51.92 -0.42 0.21 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.63 6.38 -51.93 -0.33 0.30 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.40 6.00 7.74 -40.82 -0.32 5.69 16 38 H 0.12 2.86 5.77 -52.49 -0.30 2.56 16 39 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 40 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 41 H 0.15 3.77 6.13 -52.48 -0.32 3.45 16 42 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -29.06 363.23 -10.57 -39.63 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.80 Total: 8.89 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.47 Total: -9.25 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.57 Total: -37.34 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.75 Total: -17.02 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -1.44 Total: -3.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.06 -10.57 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452642963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.835 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds