Wall clock time and date at job start Tue Mar 31 2020 20:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47546 * 2 1 4 4 C 1.47011 * 110.99475 * 293.63406 * 3 2 1 5 5 C 1.53100 * 109.25803 * 177.60921 * 4 3 2 6 6 O 1.43017 * 109.26003 * 56.84308 * 5 4 3 7 7 C 1.43014 * 113.73821 * 301.33358 * 6 5 4 8 8 H 1.08994 * 109.50848 * 298.73501 * 7 6 5 9 9 C 1.50704 * 109.50455 * 178.60100 * 7 6 5 10 10 O 1.21271 * 120.00095 * 355.21935 * 9 7 6 11 11 N 1.34777 * 119.99842 * 175.21628 * 9 7 6 12 12 C 1.39265 * 119.99996 * 174.43312 * 11 9 7 13 13 C 1.39470 * 119.83852 * 335.08822 * 12 11 9 14 14 C 1.36367 * 120.18051 * 179.97438 * 13 12 11 15 15 C 1.40895 * 119.84981 * 0.02562 * 14 13 12 16 16 C 1.41153 * 120.15819 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99699 * 34.92897 * 16 15 14 18 18 C 1.39904 * 119.99713 * 214.92568 * 16 15 14 19 19 N 1.30872 * 120.00454 * 355.19307 * 18 16 15 20 20 Si 1.86800 * 119.99752 * 175.19030 * 18 16 15 21 21 H 1.48499 * 109.47302 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46855 * 119.99949 * 20 18 16 23 23 H 1.48493 * 109.47395 * 240.00132 * 20 18 16 24 24 C 1.40836 * 119.68173 * 359.97438 * 15 14 13 25 25 C 1.36482 * 119.81951 * 359.73876 * 24 15 14 26 26 Cl 1.73602 * 119.92773 * 180.27396 * 25 24 15 27 27 C 1.47014 * 111.00050 * 170.00017 * 3 2 1 28 28 H 1.08989 * 109.47441 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47213 * 300.00599 * 1 2 3 30 30 H 1.09005 * 109.46699 * 60.00004 * 1 2 3 31 31 H 1.08995 * 109.47222 * 239.99398 * 2 1 3 32 32 H 1.09008 * 109.46458 * 119.99540 * 2 1 3 33 33 H 1.09002 * 109.50646 * 297.54114 * 4 3 2 34 34 H 1.09001 * 109.50855 * 57.67224 * 4 3 2 35 35 H 1.09000 * 109.50463 * 296.91492 * 5 4 3 36 36 H 1.08996 * 109.50807 * 176.78165 * 5 4 3 37 37 H 0.97002 * 120.00293 * 354.43404 * 11 9 7 38 38 H 1.08000 * 119.90872 * 359.95981 * 13 12 11 39 39 H 1.07999 * 120.08065 * 179.97438 * 14 13 12 40 40 H 0.96996 * 119.99999 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.09319 * 180.02562 * 24 15 14 42 42 H 1.08998 * 109.49980 * 302.32059 * 27 3 2 43 43 H 1.08994 * 109.50904 * 62.45268 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6766 2.0650 -1.2574 5 6 2.1517 3.5189 -1.1911 6 8 3.5572 3.5444 -0.9278 7 6 3.9268 2.8914 0.2897 8 1 3.4490 3.3929 1.1313 9 6 5.4238 2.9445 0.4549 10 8 6.1149 3.4101 -0.4262 11 7 5.9945 2.4747 1.5819 12 6 7.3819 2.4165 1.6878 13 6 8.1628 2.3314 0.5354 14 6 9.5220 2.2746 0.6309 15 6 10.1376 2.3014 1.8980 16 6 11.5439 2.2423 2.0045 17 1 12.1624 2.7187 1.2583 18 6 12.1364 1.5668 3.0768 19 7 11.3900 1.0707 4.0305 20 14 13.9929 1.3727 3.1472 21 1 14.6036 2.0185 1.9576 22 1 14.5115 2.0171 4.3806 23 1 14.3396 -0.0711 3.1598 24 6 9.3431 2.3874 3.0577 25 6 7.9843 2.4495 2.9464 26 17 7.0026 2.5627 4.3737 27 6 3.4697 1.4311 0.2383 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.1663 1.5597 -2.0899 34 1 0.5964 2.0413 -1.4010 35 1 1.6224 4.0387 -0.3926 36 1 1.9507 4.0113 -2.1426 37 1 5.4389 2.1771 2.3192 38 1 7.6899 2.3103 -0.4353 39 1 10.1251 2.2083 -0.2625 40 1 11.8008 0.6020 4.7738 41 1 9.8081 2.4088 4.0323 42 1 3.6982 0.9446 1.1866 43 1 3.9881 0.9156 -0.5702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452642963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:20 Heat of formation + Delta-G solvation = -72.941591 kcal Electronic energy + Delta-G solvation = -26799.954604 eV Core-core repulsion = 22870.183815 eV Total energy + Delta-G solvation = -3929.770789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77453 -40.41626 -39.09610 -37.26575 -37.19806 -36.16706 -34.89797 -32.89719 -31.83639 -31.32449 -30.79939 -28.30155 -26.72106 -25.45366 -23.97622 -23.39201 -22.61379 -21.56003 -21.18476 -19.47190 -18.86636 -18.22871 -17.32634 -17.21982 -17.00461 -16.78072 -16.26910 -16.02298 -15.82572 -15.52238 -15.25780 -15.06484 -14.80288 -14.61568 -14.43465 -14.08394 -13.91218 -13.51150 -13.15390 -13.07211 -12.90317 -12.81697 -12.75028 -12.63847 -12.51346 -12.22179 -12.05432 -11.89169 -11.79649 -11.76866 -11.58415 -11.27684 -10.93005 -10.78867 -10.51003 -9.52712 -9.42904 -8.82111 -8.55832 -6.38553 0.53879 0.92149 1.35019 1.39224 1.42062 1.56125 1.63412 1.78811 2.23492 2.62661 2.71690 3.00686 3.52152 3.57527 3.63272 3.86463 3.93111 4.02553 4.24706 4.28129 4.32038 4.47263 4.48879 4.58438 4.63607 4.66216 4.72668 4.83883 4.88892 4.97802 4.99495 5.08536 5.16492 5.28231 5.35225 5.43536 5.66486 5.78648 5.80088 5.91363 5.95674 6.05277 6.20750 6.50284 6.52807 6.83966 6.89578 7.15651 8.37049 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020360 B = 0.002626 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.947562 B =10658.848823 C =11078.985759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 N -0.534 5.534 4 C 0.013 3.987 5 C 0.057 3.943 6 O -0.387 6.387 7 C 0.092 3.908 8 H 0.114 0.886 9 C 0.508 3.492 10 O -0.550 6.550 11 N -0.636 5.636 12 C 0.030 3.970 13 C -0.093 4.093 14 C -0.208 4.208 15 C 0.077 3.923 16 C -0.488 4.488 17 H 0.079 0.921 18 C 0.030 3.970 19 N -0.833 5.833 20 Si 0.989 3.011 21 H -0.260 1.260 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.149 4.149 25 C -0.030 4.030 26 Cl -0.084 7.084 27 C 0.035 3.965 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.415 0.585 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.288 0.712 41 H 0.131 0.869 42 H 0.106 0.894 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.957 -2.255 -3.287 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.259 5.259 4 C -0.114 4.114 5 C -0.019 4.019 6 O -0.306 6.306 7 C 0.030 3.970 8 H 0.132 0.868 9 C 0.295 3.705 10 O -0.427 6.427 11 N -0.282 5.282 12 C -0.065 4.065 13 C -0.113 4.113 14 C -0.228 4.228 15 C 0.074 3.926 16 C -0.518 4.518 17 H 0.097 0.903 18 C -0.183 4.183 19 N -0.460 5.460 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.190 1.190 23 H -0.192 1.192 24 C -0.170 4.170 25 C -0.058 4.058 26 Cl -0.056 7.056 27 C -0.094 4.094 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.253 0.747 38 H 0.142 0.858 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.148 0.852 42 H 0.124 0.876 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.712 -1.721 -3.331 20.066 hybrid contribution 0.948 -0.827 0.019 1.258 sum -18.764 -2.548 -3.313 19.224 Atomic orbital electron populations 1.21756 0.92996 1.02569 1.02665 1.22223 0.97485 0.87194 1.01311 1.62330 1.11326 1.17664 1.34617 1.22941 1.03254 0.95100 0.90138 1.23027 0.79469 0.95960 1.03481 1.88099 1.25886 1.76952 1.39650 1.21800 0.89769 0.94879 0.90512 0.86840 1.20730 0.90509 0.77342 0.81880 1.90656 1.64774 1.44802 1.42434 1.42815 1.04755 1.62424 1.18180 1.16967 0.82771 1.14957 0.91816 1.20606 0.93522 1.00255 0.96921 1.21068 0.93946 1.10441 0.97380 1.17916 0.94392 0.89586 0.90664 1.19749 0.91744 1.31549 1.08729 0.90303 1.26743 1.05411 0.92886 0.93244 1.69797 1.39108 1.28235 1.08823 0.85035 0.75808 0.78832 0.79299 1.18353 1.19000 1.19218 1.21118 0.90078 1.05126 1.00653 1.20377 0.91734 1.08703 0.85028 1.98251 1.70721 1.97013 1.39576 1.22589 0.89458 0.94345 1.03026 0.91020 0.91802 0.92163 0.94971 0.90021 0.94756 0.86620 0.90729 0.86230 0.74703 0.85779 0.87346 0.90154 0.85189 0.87585 0.94869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.85 71.98 0.71 -0.74 16 2 C 0.05 0.64 5.68 86.30 0.49 1.13 16 3 N -0.53 -9.19 4.73 -895.20 -4.23 -13.43 16 4 C 0.01 0.21 5.44 86.32 0.47 0.68 16 5 C 0.06 1.00 7.01 72.02 0.50 1.51 16 6 O -0.39 -10.88 10.01 -130.02 -1.30 -12.18 16 7 C 0.09 2.38 3.22 29.88 0.10 2.47 16 8 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 9 C 0.51 17.80 6.98 87.66 0.61 18.42 16 10 O -0.55 -24.37 13.64 15.96 0.22 -24.15 16 11 N -0.64 -21.98 5.12 -303.03 -1.55 -23.53 16 12 C 0.03 1.29 6.44 38.58 0.25 1.54 16 13 C -0.09 -4.40 8.63 22.13 0.19 -4.21 16 14 C -0.21 -10.44 9.74 22.48 0.22 -10.22 16 15 C 0.08 4.13 5.55 -21.28 -0.12 4.01 16 16 C -0.49 -25.73 9.02 23.39 0.21 -25.52 16 17 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 18 C 0.03 1.50 5.42 85.24 0.46 1.96 16 19 N -0.83 -42.20 10.59 21.82 0.23 -41.97 16 20 Si 0.99 37.75 29.56 68.60 2.03 39.78 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 24 C -0.15 -7.64 8.38 22.50 0.19 -7.45 16 25 C -0.03 -1.34 6.30 22.18 0.14 -1.20 16 26 Cl -0.08 -3.07 27.75 -2.72 -0.08 -3.14 16 27 C 0.03 0.75 4.88 86.32 0.42 1.17 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.55 6.52 -2.38 -0.02 0.53 16 31 H 0.03 0.49 8.12 -2.39 -0.02 0.47 16 32 H 0.08 1.11 8.04 -2.38 -0.02 1.09 16 33 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 1.23 6.38 -2.39 -0.02 1.21 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.42 11.69 7.74 -92.71 -0.72 10.97 16 38 H 0.12 5.87 5.77 -2.91 -0.02 5.85 16 39 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 40 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 41 H 0.13 6.99 6.13 -2.91 -0.02 6.97 16 42 H 0.11 1.98 8.09 -2.39 -0.02 1.96 16 43 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -64.34 363.23 0.49 -63.85 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.33 Total: 31.23 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.84 Total: -16.46 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -5.55 Total: -78.93 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.08 Total: -36.34 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -0.08 Total: -3.14 kcal Total: -64.34 0.49 -63.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452642963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.090 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds