Wall clock time and date at job start Tue Mar 31 2020 20:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47219 * 2 1 4 4 C 1.46498 * 119.99677 * 269.99887 * 3 2 1 5 5 C 1.50699 * 109.47407 * 269.99851 * 4 3 2 6 6 H 1.08000 * 119.99532 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00216 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99984 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99686 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47241 * 90.00093 * 9 7 5 11 11 H 1.48504 * 109.46803 * 209.99572 * 9 7 5 12 12 H 1.48493 * 109.47223 * 329.99534 * 9 7 5 13 13 C 1.34775 * 120.00128 * 89.99734 * 3 2 1 14 14 O 1.21277 * 119.99950 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99863 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46794 * 185.37653 * 15 13 3 17 17 C 1.46755 * 111.00318 * 66.12741 * 16 15 13 18 18 C 1.53418 * 108.59965 * 184.99444 * 17 16 15 19 19 O 1.43149 * 107.88768 * 63.27242 * 18 17 16 20 20 C 1.36176 * 116.66641 * 314.68255 * 19 18 17 21 21 C 1.38881 * 118.74420 * 194.83016 * 20 19 18 22 22 Cl 1.73605 * 119.90635 * 0.17543 * 21 20 19 23 23 C 1.38271 * 120.18815 * 180.20392 * 21 20 19 24 24 C 1.38254 * 120.00927 * 0.02562 * 23 21 20 25 25 C 1.38053 * 120.12529 * 359.90762 * 24 23 21 26 26 C 1.38913 * 121.38755 * 14.86790 * 20 19 18 27 27 H 1.09005 * 109.47663 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47325 * 300.00108 * 1 2 3 29 29 H 1.09006 * 109.47263 * 59.99818 * 1 2 3 30 30 H 1.09001 * 109.47325 * 239.99892 * 2 1 3 31 31 H 1.08999 * 109.46905 * 120.00024 * 2 1 3 32 32 H 1.08998 * 109.47264 * 30.00442 * 4 3 2 33 33 H 1.09005 * 109.47251 * 149.99942 * 4 3 2 34 34 H 0.97003 * 119.99934 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47287 * 65.37733 * 15 13 3 36 36 H 1.09002 * 109.47148 * 305.37521 * 15 13 3 37 37 H 1.08998 * 109.61668 * 304.73490 * 17 16 15 38 38 H 1.09001 * 109.61381 * 65.08332 * 17 16 15 39 39 H 1.09001 * 109.78149 * 182.87059 * 18 17 16 40 40 H 1.09006 * 109.78102 * 303.68010 * 18 17 16 41 41 H 1.07993 * 119.99145 * 179.97438 * 23 21 20 42 42 H 1.07998 * 119.93557 * 179.97438 * 24 23 21 43 43 H 1.08004 * 119.86152 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3425 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3494 3.1264 -3.6177 9 14 5.9134 2.0962 -3.4170 10 1 5.9761 0.8756 -4.2606 11 1 6.3929 3.2637 -4.1995 12 1 6.7735 1.9154 -2.2201 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1598 1.1671 15 6 1.9922 1.3060 2.4723 16 7 2.1861 2.2444 3.5858 17 6 1.1693 3.3023 3.5652 18 6 1.4957 4.3163 4.6694 19 8 2.7590 4.9135 4.3584 20 6 3.7542 4.0699 3.9681 21 6 5.0614 4.5390 3.9570 22 17 5.3990 6.1721 4.4397 23 6 6.0945 3.7093 3.5619 24 6 5.8279 2.4088 3.1760 25 6 4.5312 1.9351 3.1858 26 6 3.4853 2.7622 3.5844 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.6754 3.5168 -4.4436 35 1 2.6891 0.4740 2.5727 36 1 0.9700 0.9279 2.4896 37 1 1.1793 3.8008 2.5960 38 1 0.1856 2.8678 3.7430 39 1 0.7233 5.0846 4.7048 40 1 1.5552 3.8075 5.6316 41 1 7.1097 4.0776 3.5541 42 1 6.6357 1.7619 2.8672 43 1 4.3279 0.9183 2.8839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532381640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:50 Heat of formation + Delta-G solvation = -29.215442 kcal Electronic energy + Delta-G solvation = -28451.102332 eV Core-core repulsion = 24523.227651 eV Total energy + Delta-G solvation = -3927.874681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24525 -39.11990 -37.44673 -36.63931 -35.81432 -35.13482 -32.84722 -30.87006 -30.21225 -29.99761 -29.51233 -27.22736 -25.48007 -24.23795 -23.12785 -22.85509 -21.73936 -20.29969 -18.61309 -18.19044 -17.03962 -16.90358 -16.51523 -16.23242 -15.67281 -15.15539 -14.91968 -14.57651 -14.32335 -14.28123 -14.02570 -13.82624 -13.62640 -13.41281 -13.06238 -12.55951 -12.51248 -12.15059 -12.00425 -11.82400 -11.76942 -11.56382 -11.35888 -11.23533 -10.97270 -10.88510 -10.82105 -10.67686 -10.63605 -10.54815 -10.17515 -10.05486 -9.65918 -9.10621 -8.46803 -8.14730 -7.75580 -7.42912 -6.07779 -4.12430 1.36542 1.54112 2.36566 3.21597 3.27592 3.30164 3.35196 3.39264 3.51365 3.79648 4.05590 4.41701 4.59528 4.77819 4.90681 4.96383 5.10607 5.18871 5.20273 5.26509 5.27492 5.31197 5.38889 5.48259 5.52235 5.59035 5.65502 5.70168 5.85543 5.92130 6.10381 6.13385 6.18810 6.37110 6.55652 6.58005 6.84073 6.97669 6.99549 7.37345 7.45718 7.46411 7.87770 8.18746 8.29614 8.82232 8.97176 9.52778 11.00470 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010275 B = 0.004856 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.476569 B = 5765.109311 C = 7403.340755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.474 3.526 14 O -0.525 6.525 15 C 0.029 3.971 16 N -0.466 5.466 17 C 0.000 4.000 18 C 0.063 3.937 19 O -0.303 6.303 20 C 0.111 3.889 21 C -0.040 4.040 22 Cl -0.067 7.067 23 C -0.110 4.110 24 C -0.109 4.109 25 C -0.115 4.115 26 C 0.085 3.915 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 -4.797 16.433 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.324 5.324 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.258 3.742 14 O -0.402 6.402 15 C -0.101 4.101 16 N -0.181 5.181 17 C -0.126 4.126 18 C -0.012 4.012 19 O -0.217 6.217 20 C 0.063 3.937 21 C -0.067 4.067 22 Cl -0.038 7.038 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.136 4.136 26 C -0.013 4.013 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.695 -3.988 16.733 17.594 hybrid contribution 0.841 0.030 -1.233 1.493 sum -2.853 -3.958 15.500 16.250 Atomic orbital electron populations 1.22223 0.96695 1.01560 1.02264 1.21444 0.93569 0.84193 1.02797 1.48315 1.63177 1.13155 1.07764 1.19263 0.96360 0.93519 0.78023 1.21373 0.96781 1.31921 1.06232 0.92539 1.24920 0.97804 0.94858 0.96419 1.69924 1.35721 1.33377 1.14325 0.86524 0.84756 0.77695 0.78648 1.20641 1.21067 1.19818 1.21093 0.79340 0.87767 0.86002 1.90736 1.45189 1.17790 1.86511 1.22556 1.04498 0.95960 0.87044 1.59328 1.01230 1.17500 1.40086 1.22995 0.95303 0.93019 1.01331 1.23091 0.84342 0.96521 0.97277 1.86285 1.19656 1.33424 1.82292 1.18045 0.87301 0.87849 1.00536 1.20057 0.91420 0.87407 1.07848 1.98331 1.95167 1.19990 1.90322 1.20702 0.97914 0.93462 1.00853 1.20743 0.96502 0.95235 1.00311 1.20851 0.91969 0.99673 1.01089 1.18435 0.90310 0.91685 1.00843 0.91989 0.93215 0.91970 0.89735 0.91783 0.95123 0.94068 0.92710 0.87296 0.87580 0.89861 0.88638 0.86910 0.91011 0.84819 0.85101 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.19 37.15 0.38 -1.65 16 2 C 0.10 1.51 5.86 -4.04 -0.02 1.49 16 3 N -0.59 -11.64 2.46 -175.06 -0.43 -12.07 16 4 C 0.25 6.27 5.16 -5.20 -0.03 6.24 16 5 C -0.52 -14.54 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.47 9.06 6.53 -10.99 -0.07 8.99 16 14 O -0.53 -12.45 12.48 5.56 0.07 -12.38 16 15 C 0.03 0.40 3.85 -4.98 -0.02 0.38 16 16 N -0.47 -6.73 4.84 -172.19 -0.83 -7.56 16 17 C 0.00 0.00 5.45 -3.69 -0.02 -0.02 16 18 C 0.06 0.78 7.26 37.37 0.27 1.05 16 19 O -0.30 -5.01 9.79 -20.30 -0.20 -5.21 16 20 C 0.11 1.94 6.47 -39.09 -0.25 1.69 16 21 C -0.04 -0.67 6.33 -39.33 -0.25 -0.92 16 22 Cl -0.07 -1.04 28.41 -51.86 -1.47 -2.51 16 23 C -0.11 -1.70 9.82 -39.56 -0.39 -2.08 16 24 C -0.11 -1.65 10.03 -39.64 -0.40 -2.05 16 25 C -0.12 -1.84 8.46 -39.30 -0.33 -2.17 16 26 C 0.09 1.43 3.84 -83.60 -0.32 1.11 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.55 7.13 -51.93 -0.37 0.18 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.30 8.07 -51.93 -0.42 0.89 16 31 H 0.06 0.74 6.59 -51.93 -0.34 0.40 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.11 1.33 5.75 -51.93 -0.30 1.03 16 36 H 0.11 1.17 6.88 -51.93 -0.36 0.81 16 37 H 0.08 1.42 6.03 -51.93 -0.31 1.11 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.13 1.79 6.05 -52.48 -0.32 1.47 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -34.10 361.15 -9.31 -43.41 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.73 Total: 1.01 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.87 Total: -1.16 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.53 Total: -45.37 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.13 Total: -17.58 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.47 Total: -2.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.10 -9.31 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532381640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.192 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds