Wall clock time and date at job start Tue Mar 31 2020 20:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47219 * 2 1 4 4 C 1.46498 * 119.99677 * 269.99887 * 3 2 1 5 5 C 1.50699 * 109.47407 * 269.99851 * 4 3 2 6 6 H 1.08000 * 119.99532 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00216 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99984 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99686 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47241 * 90.00093 * 9 7 5 11 11 H 1.48504 * 109.46803 * 209.99572 * 9 7 5 12 12 H 1.48493 * 109.47223 * 329.99534 * 9 7 5 13 13 C 1.34775 * 120.00128 * 89.99734 * 3 2 1 14 14 O 1.21277 * 119.99950 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99863 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46794 * 185.37653 * 15 13 3 17 17 C 1.46755 * 111.00318 * 66.12741 * 16 15 13 18 18 C 1.53418 * 108.59965 * 184.99444 * 17 16 15 19 19 O 1.43149 * 107.88768 * 63.27242 * 18 17 16 20 20 C 1.36176 * 116.66641 * 314.68255 * 19 18 17 21 21 C 1.38881 * 118.74420 * 194.83016 * 20 19 18 22 22 Cl 1.73605 * 119.90635 * 0.17543 * 21 20 19 23 23 C 1.38271 * 120.18815 * 180.20392 * 21 20 19 24 24 C 1.38254 * 120.00927 * 0.02562 * 23 21 20 25 25 C 1.38053 * 120.12529 * 359.90762 * 24 23 21 26 26 C 1.38913 * 121.38755 * 14.86790 * 20 19 18 27 27 H 1.09005 * 109.47663 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47325 * 300.00108 * 1 2 3 29 29 H 1.09006 * 109.47263 * 59.99818 * 1 2 3 30 30 H 1.09001 * 109.47325 * 239.99892 * 2 1 3 31 31 H 1.08999 * 109.46905 * 120.00024 * 2 1 3 32 32 H 1.08998 * 109.47264 * 30.00442 * 4 3 2 33 33 H 1.09005 * 109.47251 * 149.99942 * 4 3 2 34 34 H 0.97003 * 119.99934 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47287 * 65.37733 * 15 13 3 36 36 H 1.09002 * 109.47148 * 305.37521 * 15 13 3 37 37 H 1.08998 * 109.61668 * 304.73490 * 17 16 15 38 38 H 1.09001 * 109.61381 * 65.08332 * 17 16 15 39 39 H 1.09001 * 109.78149 * 182.87059 * 18 17 16 40 40 H 1.09006 * 109.78102 * 303.68010 * 18 17 16 41 41 H 1.07993 * 119.99145 * 179.97438 * 23 21 20 42 42 H 1.07998 * 119.93557 * 179.97438 * 24 23 21 43 43 H 1.08004 * 119.86152 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3425 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3494 3.1264 -3.6177 9 14 5.9134 2.0962 -3.4170 10 1 5.9761 0.8756 -4.2606 11 1 6.3929 3.2637 -4.1995 12 1 6.7735 1.9154 -2.2201 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1598 1.1671 15 6 1.9922 1.3060 2.4723 16 7 2.1861 2.2444 3.5858 17 6 1.1693 3.3023 3.5652 18 6 1.4957 4.3163 4.6694 19 8 2.7590 4.9135 4.3584 20 6 3.7542 4.0699 3.9681 21 6 5.0614 4.5390 3.9570 22 17 5.3990 6.1721 4.4397 23 6 6.0945 3.7093 3.5619 24 6 5.8279 2.4088 3.1760 25 6 4.5312 1.9351 3.1858 26 6 3.4853 2.7622 3.5844 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.6754 3.5168 -4.4436 35 1 2.6891 0.4740 2.5727 36 1 0.9700 0.9279 2.4896 37 1 1.1793 3.8008 2.5960 38 1 0.1856 2.8678 3.7430 39 1 0.7233 5.0846 4.7048 40 1 1.5552 3.8075 5.6316 41 1 7.1097 4.0776 3.5541 42 1 6.6357 1.7619 2.8672 43 1 4.3279 0.9183 2.8839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532381640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:49 Heat of formation + Delta-G solvation = -51.936073 kcal Electronic energy + Delta-G solvation = -28452.087573 eV Core-core repulsion = 24523.227651 eV Total energy + Delta-G solvation = -3928.859922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.42589 -40.53302 -38.59171 -37.89651 -37.10772 -36.54869 -34.90930 -31.95605 -31.65269 -31.17670 -30.75799 -28.91656 -26.83904 -25.34247 -24.82693 -24.12777 -23.05818 -21.43116 -20.02275 -19.36038 -18.65180 -18.26419 -18.07450 -17.54266 -17.13364 -16.49874 -16.23744 -16.17370 -15.59694 -15.53936 -15.26256 -14.98020 -14.93543 -14.65899 -14.43322 -14.07841 -13.66759 -13.61101 -13.29259 -13.15012 -13.10120 -12.89049 -12.82014 -12.68078 -12.51753 -12.46831 -12.15862 -12.00306 -11.92397 -11.80825 -11.71195 -11.70099 -11.29730 -10.65090 -10.52578 -9.41774 -9.35454 -8.64374 -8.23222 -6.37267 0.15692 0.34601 1.14442 1.34150 1.37653 1.47210 1.79200 2.20986 2.28129 2.39558 2.44887 2.88723 3.07069 3.56099 3.65632 3.70346 3.92590 4.08492 4.11512 4.18332 4.23127 4.29385 4.33485 4.42035 4.45364 4.52887 4.64380 4.65845 4.77004 4.92037 4.97510 5.00542 5.05410 5.06327 5.21346 5.38610 5.39417 5.45594 5.57543 5.72109 5.85048 5.85982 6.06130 6.31404 6.69804 6.79924 7.28341 7.47177 8.83699 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010275 B = 0.004856 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.476569 B = 5765.109311 C = 7403.340755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.598 5.598 4 C 0.266 3.734 5 C -0.534 4.534 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.468 3.532 14 O -0.579 6.579 15 C 0.040 3.960 16 N -0.456 5.456 17 C 0.000 4.000 18 C 0.057 3.943 19 O -0.325 6.325 20 C 0.089 3.911 21 C -0.063 4.063 22 Cl -0.065 7.065 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.129 4.129 26 C 0.071 3.929 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.018 0.982 33 H -0.010 1.010 34 H 0.265 0.735 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.041 0.959 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -7.404 17.941 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.145 3.855 5 C -0.573 4.573 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.255 3.745 14 O -0.459 6.459 15 C -0.089 4.089 16 N -0.170 5.170 17 C -0.126 4.126 18 C -0.017 4.017 19 O -0.239 6.239 20 C 0.041 3.959 21 C -0.091 4.091 22 Cl -0.036 7.036 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.149 4.149 26 C -0.027 4.027 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.036 0.964 33 H 0.008 0.992 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.060 0.940 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.109 0.891 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.796 -6.646 18.269 19.808 hybrid contribution 0.802 0.872 -1.684 2.059 sum -2.995 -5.774 16.586 17.815 Atomic orbital electron populations 1.22164 0.94555 1.03602 1.01644 1.21794 0.95322 0.81246 1.04184 1.48310 1.63540 1.15040 1.06077 1.18611 0.95154 0.91165 0.80614 1.21672 0.97800 1.31559 1.06222 0.92686 1.25831 1.02131 0.94577 0.96630 1.70053 1.37763 1.34455 1.14824 0.85495 0.79415 0.78095 0.78356 1.18688 1.21131 1.19447 1.22103 0.77809 0.87278 0.87330 1.90723 1.47347 1.20401 1.87437 1.22702 1.07399 0.95545 0.83210 1.59468 1.00501 1.17593 1.39459 1.23067 0.96895 0.93135 0.99537 1.23441 0.83335 0.97336 0.97620 1.86237 1.20887 1.34427 1.82383 1.18346 0.87796 0.88557 1.01195 1.20397 0.92059 0.87911 1.08731 1.98316 1.95121 1.19864 1.90342 1.21029 0.98600 0.93662 1.00365 1.21132 0.97217 0.95471 0.99761 1.21204 0.92215 1.00550 1.00933 1.18683 0.91583 0.91638 1.00807 0.88517 0.91765 0.94713 0.91116 0.87610 0.96442 0.99202 0.92603 0.84828 0.83722 0.94030 0.84726 0.84404 0.89112 0.82929 0.82632 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.19 71.98 0.73 -2.69 16 2 C 0.10 2.58 5.86 86.38 0.51 3.08 16 3 N -0.60 -23.38 2.46 -826.17 -2.03 -25.41 16 4 C 0.27 14.05 5.16 85.63 0.44 14.49 16 5 C -0.53 -30.24 9.39 25.60 0.24 -30.00 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 9 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 C 0.47 17.61 6.53 87.66 0.57 18.18 16 14 O -0.58 -28.26 12.48 -3.02 -0.04 -28.29 16 15 C 0.04 0.98 3.85 85.56 0.33 1.31 16 16 N -0.46 -12.09 4.84 -698.69 -3.38 -15.48 16 17 C 0.00 0.00 5.45 86.47 0.47 0.47 16 18 C 0.06 1.33 7.26 72.12 0.52 1.85 16 19 O -0.33 -10.80 9.79 -95.56 -0.94 -11.74 16 20 C 0.09 3.14 6.47 22.59 0.15 3.29 16 21 C -0.06 -2.17 6.33 22.43 0.14 -2.03 16 22 Cl -0.07 -2.06 28.41 -2.72 -0.08 -2.14 16 23 C -0.12 -3.58 9.82 22.28 0.22 -3.36 16 24 C -0.12 -3.42 10.03 22.23 0.22 -3.19 16 25 C -0.13 -3.92 8.46 22.45 0.19 -3.73 16 26 C 0.07 2.31 3.84 38.25 0.15 2.45 16 27 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 1.18 7.13 -2.39 -0.02 1.16 16 29 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 31 H 0.11 1.95 6.59 -2.39 -0.02 1.94 16 32 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 33 H -0.01 -0.63 7.42 -2.38 -0.02 -0.65 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.13 2.64 5.75 -2.39 -0.01 2.62 16 36 H 0.15 2.43 6.88 -2.39 -0.02 2.42 16 37 H 0.04 1.43 6.03 -2.39 -0.01 1.42 16 38 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 42 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.15 3.69 6.05 -2.91 -0.02 3.67 16 Total: -1.00 -79.62 361.15 2.23 -77.39 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.03 Total: 14.20 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.35 Total: 0.99 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -5.13 Total: -97.37 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.97 Total: -40.03 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -79.62 2.23 -77.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532381640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.455 kcal (2) G-P(sol) polarization free energy of solvation -79.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds