Wall clock time and date at job start Tue Mar 31 2020 21:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99892 * 2 1 4 4 C 1.38768 * 120.05240 * 0.25400 * 3 2 1 5 5 C 1.38125 * 119.97448 * 180.25608 * 4 3 2 6 6 C 1.38266 * 120.06572 * 359.76334 * 5 4 3 7 7 C 1.38362 * 120.09862 * 359.97438 * 6 5 4 8 8 Cl 1.73602 * 119.98420 * 180.02562 * 7 6 5 9 9 C 1.38281 * 120.02975 * 0.02562 * 7 6 5 10 10 C 1.50703 * 120.03297 * 180.02562 * 9 7 6 11 11 N 1.46897 * 109.47306 * 89.99530 * 10 9 7 12 12 C 1.46905 * 110.99826 * 189.99830 * 11 10 9 13 13 C 1.53243 * 109.33672 * 187.25448 * 12 11 10 14 14 N 1.47076 * 108.52280 * 306.17389 * 13 12 11 15 15 C 1.34777 * 120.88062 * 231.18540 * 14 13 12 16 16 O 1.21687 * 120.00006 * 5.22924 * 15 14 13 17 17 C 1.46376 * 120.00313 * 185.22734 * 15 14 13 18 18 H 1.07997 * 119.99552 * 354.99977 * 17 15 14 19 19 C 1.40044 * 120.00321 * 175.00114 * 17 15 14 20 20 N 1.30673 * 119.99689 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00192 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47087 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47042 * 299.99758 * 21 19 17 24 24 H 1.48503 * 109.47023 * 59.99987 * 21 19 17 25 25 C 1.47077 * 118.23996 * 51.45605 * 14 13 12 26 26 C 1.46898 * 111.00153 * 314.30128 * 11 10 9 27 27 H 1.09001 * 109.46902 * 60.00433 * 1 2 3 28 28 H 1.09006 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47387 * 299.99919 * 1 2 3 30 30 H 1.08007 * 120.01025 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.96504 * 179.75057 * 5 4 3 32 32 H 1.08001 * 119.94726 * 179.97438 * 6 5 4 33 33 H 1.09008 * 109.47033 * 329.99609 * 10 9 7 34 34 H 1.09000 * 109.46752 * 210.00029 * 10 9 7 35 35 H 1.08994 * 109.49159 * 67.30254 * 12 11 10 36 36 H 1.08996 * 109.49043 * 307.21370 * 12 11 10 37 37 H 1.08999 * 109.62657 * 186.46027 * 13 12 11 38 38 H 1.09002 * 109.78902 * 65.97743 * 13 12 11 39 39 H 0.97000 * 120.00181 * 180.02562 * 20 19 17 40 40 H 1.09007 * 109.62715 * 68.25082 * 25 14 13 41 41 H 1.09000 * 109.63081 * 188.83321 * 25 14 13 42 42 H 1.09001 * 109.49368 * 292.70476 * 26 11 10 43 43 H 1.09004 * 109.49188 * 52.78672 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3754 0.0053 5 6 1.9199 3.6052 0.0000 6 6 3.3006 3.6774 -0.0058 7 6 4.0560 2.5181 -0.0056 8 17 5.7895 2.6121 -0.0121 9 6 3.4308 1.2847 -0.0002 10 6 4.2534 0.0221 0.0005 11 7 4.5253 -0.3844 1.3857 12 6 5.5159 -1.4683 1.4315 13 6 5.6368 -1.9848 2.8691 14 7 5.9215 -0.8443 3.7530 15 6 6.9528 -0.8815 4.6199 16 8 7.7196 -1.8264 4.6131 17 6 7.1505 0.2146 5.5697 18 1 6.5199 1.0901 5.5227 19 6 8.1574 0.1281 6.5392 20 7 8.9201 -0.9315 6.5962 21 14 8.4093 1.5266 7.7516 22 1 9.5291 1.1918 8.6678 23 1 8.7312 2.7724 7.0103 24 1 7.1675 1.7270 8.5410 25 6 5.0473 0.3356 3.6701 26 6 4.9532 0.7632 2.1968 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2125 2.3200 0.0091 31 1 1.3323 4.5114 0.0000 32 1 3.7902 4.6400 -0.0104 33 1 5.1958 0.2021 -0.5169 34 1 3.7044 -0.7695 -0.5094 35 1 6.4828 -1.0916 1.0979 36 1 5.1965 -2.2806 0.7787 37 1 6.4499 -2.7081 2.9311 38 1 4.7023 -2.4578 3.1711 39 1 9.6173 -0.9916 7.2679 40 1 4.0554 0.0835 4.0454 41 1 5.4705 1.1472 4.2619 42 1 5.9280 1.1087 1.8525 43 1 4.2258 1.5690 2.0991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571295065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:32 Heat of formation + Delta-G solvation = -54.122892 kcal Electronic energy + Delta-G solvation = -27695.143589 eV Core-core repulsion = 23766.188840 eV Total energy + Delta-G solvation = -3928.954749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50131 -40.29511 -38.88300 -38.09314 -37.25426 -35.40479 -34.62385 -32.78986 -31.79876 -30.98823 -29.23667 -28.22719 -27.77116 -25.46064 -24.59583 -23.19956 -22.74718 -21.98002 -20.54935 -19.03247 -18.49042 -17.85589 -17.50669 -16.91466 -16.86512 -16.39830 -16.09609 -15.99758 -15.85087 -15.76051 -15.43008 -15.40873 -14.80155 -14.42408 -14.23618 -13.96382 -13.63903 -13.31780 -13.21184 -13.07071 -12.89549 -12.82000 -12.69377 -12.56628 -12.42683 -12.35496 -12.10785 -12.02863 -11.93141 -11.85415 -11.70449 -11.54458 -10.91951 -9.86136 -9.78852 -9.36588 -9.19601 -8.95231 -8.29160 -6.84272 0.06574 0.34396 1.05186 1.38695 1.42648 1.53941 2.23476 2.44892 2.46006 2.52452 2.79713 3.10479 3.58620 3.59669 3.87192 3.98932 4.01983 4.12886 4.15368 4.31213 4.37800 4.39611 4.41515 4.46708 4.48052 4.59695 4.60199 4.65931 4.80099 4.80775 4.86440 4.92143 4.94893 5.17673 5.21580 5.27416 5.36207 5.36974 5.61508 5.72774 6.01367 6.04068 6.13137 6.41317 6.44026 6.87316 7.41928 8.46086 8.67020 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.003481 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.796279 B = 8042.081911 C = 8685.595529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.323 6.323 3 C 0.150 3.850 4 C -0.203 4.203 5 C -0.059 4.059 6 C -0.155 4.155 7 C -0.008 4.008 8 Cl -0.072 7.072 9 C -0.131 4.131 10 C 0.105 3.895 11 N -0.522 5.522 12 C 0.059 3.941 13 C 0.125 3.875 14 N -0.646 5.646 15 C 0.541 3.459 16 O -0.633 6.633 17 C -0.569 4.569 18 H 0.091 0.909 19 C 0.029 3.971 20 N -0.823 5.823 21 Si 0.995 3.005 22 H -0.274 1.274 23 H -0.254 1.254 24 H -0.252 1.252 25 C 0.128 3.872 26 C 0.050 3.950 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.149 0.851 33 H 0.039 0.961 34 H 0.093 0.907 35 H 0.016 0.984 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.274 0.726 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.031 0.969 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.121 11.272 -16.189 28.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.236 6.236 3 C 0.103 3.897 4 C -0.222 4.222 5 C -0.077 4.077 6 C -0.173 4.173 7 C -0.035 4.035 8 Cl -0.043 7.043 9 C -0.132 4.132 10 C -0.022 4.022 11 N -0.247 5.247 12 C -0.069 4.069 13 C 0.001 3.999 14 N -0.383 5.383 15 C 0.348 3.652 16 O -0.520 6.520 17 C -0.606 4.606 18 H 0.109 0.891 19 C -0.186 4.186 20 N -0.452 5.452 21 Si 0.814 3.186 22 H -0.198 1.198 23 H -0.178 1.178 24 H -0.175 1.175 25 C 0.005 3.995 26 C -0.079 4.079 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.179 0.821 31 H 0.186 0.814 32 H 0.166 0.834 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.034 0.966 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.770 10.259 -15.930 27.384 hybrid contribution 1.327 0.456 0.220 1.420 sum -18.443 10.715 -15.710 26.491 Atomic orbital electron populations 1.23368 0.76294 1.05486 1.02429 1.86134 1.23363 1.26171 1.87887 1.18684 0.90579 0.85633 0.94774 1.21678 1.01771 0.91463 1.07268 1.21284 0.93134 0.98590 0.94699 1.21211 0.94575 0.97128 1.04422 1.20767 0.84404 0.94628 1.03746 1.98395 1.10969 1.98368 1.96595 1.18848 0.92001 0.93844 1.08539 1.20860 0.97353 0.94593 0.89412 1.62108 1.43609 1.08781 1.10205 1.22339 0.92761 0.95128 0.96712 1.21284 0.99688 0.89680 0.89216 1.48109 1.31907 1.17315 1.40944 1.18660 0.78923 0.87319 0.80331 1.90527 1.47952 1.39498 1.74060 1.21452 1.19084 1.04364 1.15665 0.89090 1.26992 0.93377 0.98959 0.99224 1.70188 1.15271 1.29104 1.30678 0.85122 0.78974 0.77445 0.77108 1.19842 1.17830 1.17544 1.21707 0.93479 0.88501 0.95854 1.22696 0.98946 0.93143 0.93091 0.90948 0.86959 0.91676 0.82074 0.81386 0.83367 0.94244 0.88832 0.96600 0.87828 0.92441 0.92043 0.91612 0.92437 0.89913 0.95124 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.53 9.54 -92.44 -0.88 -7.41 16 3 C 0.15 3.11 6.66 22.50 0.15 3.26 16 4 C -0.20 -2.95 9.04 22.37 0.20 -2.75 16 5 C -0.06 -0.77 10.04 22.25 0.22 -0.55 16 6 C -0.15 -2.71 9.83 22.31 0.22 -2.49 16 7 C -0.01 -0.19 4.84 22.31 0.11 -0.08 16 8 Cl -0.07 -1.91 24.55 -2.72 -0.07 -1.98 16 9 C -0.13 -3.18 4.14 -19.75 -0.08 -3.26 16 10 C 0.10 2.85 4.91 85.56 0.42 3.27 16 11 N -0.52 -16.82 4.77 -898.86 -4.29 -21.11 16 12 C 0.06 2.08 5.58 86.38 0.48 2.56 16 13 C 0.13 5.39 6.61 86.35 0.57 5.96 16 14 N -0.65 -31.96 3.00 -822.13 -2.47 -34.43 16 15 C 0.54 33.14 7.63 86.36 0.66 33.79 16 16 O -0.63 -44.26 14.49 -4.31 -0.06 -44.33 16 17 C -0.57 -33.36 8.86 24.83 0.22 -33.14 16 18 H 0.09 4.79 5.74 -2.91 -0.02 4.77 16 19 C 0.03 1.69 5.50 85.30 0.47 2.15 16 20 N -0.82 -51.78 11.84 21.83 0.26 -51.52 16 21 Si 0.99 41.88 29.56 68.60 2.03 43.91 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 25 C 0.13 5.22 6.50 86.50 0.56 5.78 16 26 C 0.05 1.73 4.18 86.54 0.36 2.09 16 27 H 0.07 0.49 7.67 -2.39 -0.02 0.47 16 28 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 0.59 7.65 -2.38 -0.02 0.57 16 30 H 0.16 1.35 6.30 -2.91 -0.02 1.33 16 31 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 32 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.04 1.12 6.84 -2.38 -0.02 1.10 16 34 H 0.09 2.40 7.52 -2.39 -0.02 2.38 16 35 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 2.98 8.11 -2.39 -0.02 2.96 16 37 H 0.06 2.78 7.04 -2.39 -0.02 2.76 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.27 15.63 8.29 -92.71 -0.77 14.87 16 40 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 41 H 0.08 3.48 5.46 -2.39 -0.01 3.47 16 42 H 0.03 1.16 6.29 -2.39 -0.02 1.15 16 43 H 0.09 2.77 5.54 -2.38 -0.01 2.75 16 Total: -1.00 -81.36 354.33 1.24 -80.12 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.04 Total: 18.84 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.68 Total: 17.90 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -6.50 Total: -107.06 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.94 Total: -51.74 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.07 Total: -1.98 kcal Total: -81.36 1.24 -80.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571295065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.999 kcal (2) G-P(sol) polarization free energy of solvation -81.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds