Wall clock time and date at job start Tue Mar 31 2020 21:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35916 * 116.99694 * 2 1 4 4 C 1.38819 * 119.97947 * 359.97438 * 3 2 1 5 5 C 1.38362 * 120.22712 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 119.91174 * 179.97438 * 5 4 3 7 7 C 1.38123 * 120.17555 * 359.97438 * 5 4 3 8 8 C 1.39549 * 119.95586 * 0.02562 * 7 5 4 9 9 C 1.47861 * 120.11339 * 179.97438 * 8 7 5 10 10 O 1.21547 * 120.00245 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00238 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00300 * 179.97438 * 11 9 8 13 13 C 1.53047 * 109.45612 * 275.02375 * 12 11 9 14 14 C 1.53193 * 109.30900 * 178.60072 * 13 12 11 15 15 N 1.46922 * 108.76583 * 54.65522 * 14 13 12 16 16 C 1.36949 * 120.62999 * 126.40453 * 15 14 13 17 17 H 1.07999 * 119.99654 * 331.83072 * 16 15 14 18 18 C 1.38808 * 119.99834 * 151.82937 * 16 15 14 19 19 N 1.31627 * 120.00310 * 343.06734 * 18 16 15 20 20 Si 1.86797 * 120.00118 * 163.06959 * 18 16 15 21 21 H 1.48503 * 109.46990 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47195 * 119.99615 * 20 18 16 23 23 H 1.48497 * 109.47408 * 239.99889 * 20 18 16 24 24 C 1.46925 * 118.74333 * 306.38253 * 15 14 13 25 25 C 1.53040 * 109.46256 * 154.97352 * 12 11 9 26 26 C 1.38469 * 119.97110 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47055 * 59.99822 * 1 2 3 28 28 H 1.08992 * 109.47655 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47113 * 300.00676 * 1 2 3 30 30 H 1.07995 * 119.89041 * 0.25164 * 4 3 2 31 31 H 1.08009 * 120.02159 * 179.97438 * 7 5 4 32 32 H 0.97001 * 119.99523 * 359.97438 * 11 9 8 33 33 H 1.09003 * 109.45926 * 34.99434 * 12 11 9 34 34 H 1.08995 * 109.49998 * 298.56296 * 13 12 11 35 35 H 1.08994 * 109.49540 * 58.66541 * 13 12 11 36 36 H 1.09004 * 109.59705 * 294.86728 * 14 13 12 37 37 H 1.08995 * 109.70068 * 174.50876 * 14 13 12 38 38 H 0.96996 * 120.00151 * 180.02562 * 19 18 16 39 39 H 1.09005 * 109.58639 * 293.82631 * 24 15 14 40 40 H 1.08996 * 109.70786 * 173.46463 * 24 15 14 41 41 H 1.09004 * 109.49476 * 301.33281 * 25 12 11 42 42 H 1.08995 * 109.49728 * 61.39442 * 25 12 11 43 43 H 1.07991 * 120.09054 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9122 3.6105 0.0000 6 17 0.9581 5.0608 -0.0014 7 6 3.2909 3.6931 0.0016 8 6 4.0588 2.5278 0.0021 9 6 5.5350 2.6121 0.0033 10 8 6.2018 1.5959 0.0042 11 7 6.1413 3.8159 0.0043 12 6 7.6038 3.8994 0.0060 13 6 8.1184 3.8019 1.4441 14 6 9.6494 3.8545 1.4390 15 7 10.0784 5.0651 0.7257 16 6 10.9370 5.9547 1.3147 17 1 10.9581 6.0536 2.3900 18 6 11.7800 6.7292 0.5297 19 7 12.0056 6.3937 -0.7229 20 14 12.5947 8.2475 1.2510 21 1 12.1806 8.4053 2.6684 22 1 14.0705 8.0987 1.1796 23 1 12.1801 9.4460 0.4784 24 6 9.5692 5.3032 -0.6318 25 6 8.0391 5.2340 -0.6035 26 6 3.4288 1.2829 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 0.2111 2.3160 0.0032 31 1 3.7745 4.6589 0.0016 32 1 5.6091 4.6269 0.0039 33 1 8.0151 3.0797 -0.5832 34 1 7.7275 4.6354 2.0277 35 1 7.7883 2.8616 1.8856 36 1 10.0438 2.9732 0.9331 37 1 10.0194 3.8837 2.4638 38 1 12.5950 6.9347 -1.2713 39 1 9.9570 4.5400 -1.3066 40 1 9.8841 6.2886 -0.9750 41 1 7.6525 5.3131 -1.6196 42 1 7.6484 6.0538 -0.0008 43 1 4.0180 0.3779 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590227667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:52 Heat of formation + Delta-G solvation = -52.821048 kcal Electronic energy + Delta-G solvation = -26368.077748 eV Core-core repulsion = 22439.179451 eV Total energy + Delta-G solvation = -3928.898297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71339 -40.72147 -39.11407 -38.47156 -37.29030 -36.09717 -34.04947 -32.43137 -31.89285 -31.54472 -30.74691 -28.27166 -27.08439 -25.13768 -23.92462 -23.72535 -23.30647 -21.53705 -21.05921 -19.74531 -18.72163 -17.94253 -17.48104 -17.24494 -16.89374 -16.82147 -16.68402 -16.07836 -15.86154 -15.56991 -15.35306 -15.09482 -14.82601 -14.74426 -14.47660 -14.17100 -14.10749 -13.41762 -13.22162 -13.12258 -13.02131 -12.87097 -12.62837 -12.52711 -12.31189 -12.22452 -12.09290 -12.00350 -11.88224 -11.84956 -11.57751 -11.39341 -11.08152 -10.56395 -10.22677 -9.98851 -9.45775 -8.70573 -7.87494 -5.33193 -0.47274 0.03081 0.91641 1.48032 1.50163 1.60776 1.63823 1.88270 2.32917 2.52348 2.56510 3.28230 3.41419 3.66594 3.73361 3.81521 3.88999 3.97915 4.02248 4.09976 4.26694 4.31995 4.38163 4.39733 4.46203 4.64797 4.74447 4.77521 4.84896 4.86805 4.92875 4.99078 5.03868 5.05905 5.14891 5.23591 5.29760 5.46572 5.47861 5.65460 5.71852 6.21169 6.39375 6.46965 7.10802 7.14962 7.84287 8.37083 9.19786 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.002308 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.024856 B =12126.343691 C =13069.269809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.135 3.865 4 C -0.169 4.169 5 C -0.005 4.005 6 Cl -0.047 7.047 7 C -0.111 4.111 8 C -0.086 4.086 9 C 0.557 3.443 10 O -0.571 6.571 11 N -0.702 5.702 12 C 0.161 3.839 13 C -0.125 4.125 14 C 0.144 3.856 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.068 0.932 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.288 1.288 24 C 0.178 3.822 25 C -0.129 4.129 26 C -0.105 4.105 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.170 0.830 31 H 0.157 0.843 32 H 0.413 0.587 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.008 0.992 37 H 0.058 0.942 38 H 0.251 0.749 39 H -0.005 1.005 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.489 -6.487 0.736 30.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.240 6.240 3 C 0.089 3.911 4 C -0.188 4.188 5 C -0.031 4.031 6 Cl -0.018 7.018 7 C -0.131 4.131 8 C -0.090 4.090 9 C 0.345 3.655 10 O -0.452 6.452 11 N -0.353 5.353 12 C 0.057 3.943 13 C -0.165 4.165 14 C 0.018 3.982 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.214 1.214 24 C 0.052 3.948 25 C -0.169 4.169 26 C -0.124 4.124 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.187 0.813 31 H 0.174 0.826 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.013 0.987 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.915 -7.174 0.644 29.799 hybrid contribution 0.557 1.114 0.057 1.247 sum -28.358 -6.060 0.701 29.007 Atomic orbital electron populations 1.23501 0.75618 1.06229 1.02845 1.86140 1.24108 1.25484 1.88260 1.18615 0.91226 0.85036 0.96195 1.21493 1.02241 0.89689 1.05388 1.20513 0.91414 0.88362 1.02856 1.98406 1.71340 1.35384 1.96705 1.21238 0.92058 0.98760 1.01041 1.19426 0.91847 0.93603 1.04094 1.18404 0.87615 0.83544 0.75941 1.90780 1.66824 1.36182 1.51388 1.45977 1.07534 1.08198 1.73552 1.20738 0.78556 0.98371 0.96628 1.22185 0.96658 1.01314 0.96327 1.20964 0.92817 0.88219 0.96169 1.44368 1.52267 1.21714 1.14941 1.19544 1.13183 1.14515 0.91861 0.91467 1.25821 0.98274 1.03441 0.97062 1.70189 1.39637 1.39460 1.08885 0.85194 0.77334 0.79538 0.78275 1.19075 1.22203 1.21409 1.20565 0.89363 0.99649 0.85219 1.22274 0.97967 0.95717 1.00930 1.20581 0.92318 0.98162 1.01385 0.91013 0.86012 0.91026 0.81291 0.82581 0.74916 0.91997 0.91276 0.92097 0.97418 0.92317 0.94023 0.98692 0.91763 0.90322 0.90880 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -5.31 10.49 -92.60 -0.97 -6.28 16 3 C 0.14 2.42 6.68 22.46 0.15 2.57 16 4 C -0.17 -2.34 8.81 22.44 0.20 -2.15 16 5 C 0.00 -0.07 6.31 22.27 0.14 0.07 16 6 Cl -0.05 -0.64 28.95 -2.72 -0.08 -0.72 16 7 C -0.11 -1.94 9.32 22.56 0.21 -1.72 16 8 C -0.09 -1.96 5.87 -20.10 -0.12 -2.07 16 9 C 0.56 16.14 7.74 86.79 0.67 16.81 16 10 O -0.57 -21.32 16.01 -3.86 -0.06 -21.38 16 11 N -0.70 -18.48 5.03 -445.25 -2.24 -20.72 16 12 C 0.16 5.42 2.42 45.02 0.11 5.53 16 13 C -0.12 -4.42 5.65 30.67 0.17 -4.25 16 14 C 0.14 6.24 6.52 86.36 0.56 6.81 16 15 N -0.61 -30.63 2.99 -699.10 -2.09 -32.72 16 16 C -0.26 -14.26 9.58 84.03 0.81 -13.46 16 17 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 18 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 19 N -0.94 -55.04 11.19 21.65 0.24 -54.80 16 20 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 C 0.18 8.45 5.30 86.36 0.46 8.90 16 25 C -0.13 -4.51 5.55 30.67 0.17 -4.34 16 26 C -0.10 -2.37 9.53 22.63 0.22 -2.15 16 27 H 0.07 0.30 7.66 -2.38 -0.02 0.28 16 28 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.30 7.65 -2.38 -0.02 0.28 16 30 H 0.17 1.37 6.28 -2.91 -0.02 1.35 16 31 H 0.16 2.11 6.40 -2.91 -0.02 2.09 16 32 H 0.41 8.12 6.63 -92.71 -0.61 7.51 16 33 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 38 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 39 H -0.01 -0.26 8.14 -2.38 -0.02 -0.28 16 40 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.14 3.44 7.65 -2.92 -0.02 3.41 16 Total: -1.00 -69.75 366.60 2.53 -67.22 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.43 Total: 13.62 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.28 Total: 9.35 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.09 Total: -108.25 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -1.03 Total: -27.66 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -69.75 2.53 -67.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590227667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.397 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds