Wall clock time and date at job start Tue Mar 31 2020 20:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46841 * 2 1 4 4 C 1.37098 * 119.99673 * 269.84072 * 3 2 1 5 5 H 1.08004 * 120.00235 * 190.73219 * 4 3 2 6 6 C 1.38952 * 120.00077 * 10.74068 * 4 3 2 7 7 N 1.31407 * 120.00116 * 12.98688 * 6 4 3 8 8 Si 1.86801 * 119.99792 * 192.98963 * 6 4 3 9 9 H 1.48500 * 109.47169 * 59.99791 * 8 6 4 10 10 H 1.48506 * 109.47204 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47514 * 299.99503 * 8 6 4 12 12 C 1.34774 * 120.00260 * 89.84411 * 3 2 1 13 13 O 1.21295 * 120.00017 * 182.25520 * 12 3 2 14 14 C 1.50695 * 119.99975 * 2.26664 * 12 3 2 15 15 C 1.50699 * 115.55316 * 66.15159 * 14 12 3 16 16 O 1.21299 * 119.99647 * 235.47870 * 15 14 12 17 17 N 1.34774 * 119.99917 * 55.20666 * 15 14 12 18 18 C 1.40167 * 119.99710 * 177.48456 * 17 15 14 19 19 C 1.38983 * 120.08656 * 325.64016 * 18 17 15 20 20 F 1.35098 * 120.04245 * 0.02562 * 19 18 17 21 21 C 1.38351 * 119.91321 * 179.77417 * 19 18 17 22 22 C 1.38265 * 120.08231 * 0.50397 * 21 19 18 23 23 C 1.38267 * 120.17506 * 359.74555 * 22 21 19 24 24 C 1.38347 * 120.08568 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.04481 * 180.02562 * 24 23 22 26 26 C 1.53004 * 117.49681 * 211.82490 * 14 12 3 27 27 C 1.53002 * 117.49487 * 280.48171 * 14 12 3 28 28 H 1.08993 * 109.47391 * 61.94279 * 1 2 3 29 29 H 1.08995 * 109.46946 * 181.94931 * 1 2 3 30 30 H 1.08998 * 109.46955 * 301.94262 * 1 2 3 31 31 H 1.08999 * 109.46690 * 239.99772 * 2 1 3 32 32 H 1.08995 * 109.46779 * 119.99612 * 2 1 3 33 33 H 0.96996 * 120.00247 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99973 * 357.48344 * 17 15 14 35 35 H 1.07992 * 119.95717 * 180.25282 * 21 19 18 36 36 H 1.08002 * 119.91394 * 179.77309 * 22 21 19 37 37 H 1.08003 * 119.95892 * 179.97438 * 23 22 21 38 38 H 1.08999 * 117.49634 * 214.99795 * 26 14 12 39 39 H 1.08999 * 117.49978 * 0.02562 * 26 14 12 40 40 H 1.08999 * 117.50151 * 359.97438 * 27 14 12 41 41 H 1.09003 * 117.49954 * 145.00060 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2499 2.0263 -1.1873 5 1 2.7694 2.9732 -1.1951 6 6 1.8161 1.4621 -2.3807 7 7 0.9716 0.4555 -2.3629 8 14 2.4335 2.1345 -4.0105 9 1 3.9118 2.0078 -4.0702 10 1 1.8257 1.3649 -5.1257 11 1 2.0541 3.5651 -4.1314 12 6 2.2399 2.0177 1.1671 13 8 2.6050 3.1744 1.1674 14 6 2.0345 1.2921 2.4719 15 6 2.9839 0.1526 2.7385 16 8 2.5503 -0.9549 2.9769 17 7 4.3148 0.3629 2.7068 18 6 5.1970 -0.6842 3.0066 19 6 4.8520 -1.6345 3.9602 20 9 3.6650 -1.5509 4.5998 21 6 5.7236 -2.6692 4.2500 22 6 6.9409 -2.7526 3.5996 23 6 7.2899 -1.8062 2.6540 24 6 6.4218 -0.7712 2.3554 25 9 6.7635 0.1528 1.4309 26 6 1.5654 2.1166 3.6724 27 6 0.5992 1.1501 2.9827 28 1 -0.3634 0.4833 -0.9068 29 1 -0.3633 -1.0270 0.0350 30 1 -0.3633 0.5437 0.8720 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.6691 0.0613 -3.1959 34 1 4.6620 1.2389 2.4765 35 1 5.4545 -3.4103 4.9879 36 1 7.6207 -3.5594 3.8306 37 1 8.2419 -1.8745 2.1484 38 1 1.9436 1.8348 4.6551 39 1 1.4051 3.1837 3.5184 40 1 -0.1962 1.5819 2.3753 41 1 0.3418 0.2325 3.5117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594248662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:59 Heat of formation + Delta-G solvation = -72.141668 kcal Electronic energy + Delta-G solvation = -30827.415704 eV Core-core repulsion = 26345.882922 eV Total energy + Delta-G solvation = -4481.532782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.00527 -48.76601 -40.55122 -39.02246 -38.01832 -35.84514 -35.08716 -34.57766 -31.69640 -30.42950 -29.83350 -29.37933 -26.06906 -24.48836 -23.18109 -22.69920 -22.31800 -21.91083 -20.83773 -19.13063 -18.29747 -17.64463 -17.40032 -16.95603 -16.68510 -15.98734 -15.61584 -15.38119 -15.27767 -15.15760 -14.93938 -14.67547 -14.36282 -14.21519 -13.93545 -13.45976 -13.25284 -12.83320 -12.72362 -12.40219 -12.17489 -12.06728 -11.83135 -11.76009 -11.41717 -11.19721 -11.05408 -10.81505 -10.61665 -10.54774 -10.35220 -10.19025 -9.96434 -9.79951 -9.67074 -8.88677 -8.85201 -8.48202 -8.29822 -7.76871 -6.29601 -3.89488 0.79458 0.87693 2.62650 2.89425 3.12613 3.21198 3.24630 3.29616 3.59011 3.75732 3.95326 4.18679 4.34398 4.52729 4.55550 4.71518 4.85267 4.95583 5.02950 5.23142 5.34522 5.36996 5.48897 5.62198 5.73959 5.87497 5.88747 6.01379 6.05006 6.15208 6.23678 6.38013 6.43306 6.70017 6.74695 6.81856 6.96550 7.30275 7.35352 7.48218 7.87890 8.00326 8.19818 8.45118 9.09451 9.35517 9.88294 10.60711 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.004703 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.370783 B = 5952.552934 C = 7018.080342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.119 3.881 3 N -0.422 5.422 4 C -0.302 4.302 5 H 0.104 0.896 6 C 0.027 3.973 7 N -0.867 5.867 8 Si 0.930 3.070 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.466 3.534 13 O -0.587 6.587 14 C -0.169 4.169 15 C 0.560 3.440 16 O -0.500 6.500 17 N -0.662 5.662 18 C 0.088 3.912 19 C 0.124 3.876 20 F -0.108 7.108 21 C -0.149 4.149 22 C -0.083 4.083 23 C -0.147 4.147 24 C 0.102 3.898 25 F -0.124 7.124 26 C -0.134 4.134 27 C -0.128 4.128 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.422 0.578 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 -6.929 11.559 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.004 4.004 3 N -0.138 5.138 4 C -0.429 4.429 5 H 0.122 0.878 6 C -0.175 4.175 7 N -0.507 5.507 8 Si 0.757 3.243 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.252 3.748 13 O -0.473 6.473 14 C -0.176 4.176 15 C 0.348 3.652 16 O -0.373 6.373 17 N -0.308 5.308 18 C -0.010 4.010 19 C 0.102 3.898 20 F -0.086 7.086 21 C -0.168 4.168 22 C -0.102 4.102 23 C -0.167 4.167 24 C 0.080 3.920 25 F -0.103 7.103 26 C -0.172 4.172 27 C -0.166 4.166 28 H 0.118 0.882 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.260 0.740 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.961 -7.208 11.500 15.735 hybrid contribution 0.225 0.677 -1.144 1.348 sum 8.186 -6.532 10.356 14.728 Atomic orbital electron populations 1.22309 0.96217 0.99557 1.02495 1.21576 0.95313 0.82763 1.00734 1.43812 1.53933 1.11727 1.04308 1.19784 1.34566 1.06442 0.82134 0.87798 1.25327 0.95539 0.96839 0.99833 1.70129 1.28872 1.24285 1.27453 0.85929 0.79106 0.78887 0.80392 1.19914 1.20844 1.19792 1.18453 0.87017 0.86539 0.82788 1.90526 1.53598 1.16911 1.86246 1.21285 0.98279 0.99691 0.98339 1.19589 0.81311 0.89180 0.75136 1.90758 1.76969 1.24076 1.45520 1.43464 1.05482 1.12842 1.69005 1.17789 0.91695 0.93744 0.97748 1.17216 0.83244 0.96565 0.92797 1.91624 1.42408 1.95694 1.78863 1.21108 0.94429 0.98278 1.03013 1.20781 0.95885 0.98468 0.95077 1.21053 1.00478 0.94373 1.00748 1.17224 0.93957 0.90329 0.90465 1.91564 1.91976 1.63859 1.62857 1.23008 1.01573 0.98832 0.93765 1.23098 0.90483 1.01404 1.01605 0.88206 0.94847 0.95682 0.88314 0.94423 0.92165 0.74022 0.83823 0.83930 0.83705 0.88460 0.86986 0.87269 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.57 37.16 0.36 -2.97 16 2 C 0.12 2.87 5.11 -4.04 -0.02 2.85 16 3 N -0.42 -10.82 2.62 -114.81 -0.30 -11.12 16 4 C -0.30 -8.25 9.48 -14.93 -0.14 -8.39 16 5 H 0.10 2.96 7.26 -52.48 -0.38 2.58 16 6 C 0.03 0.70 5.17 -17.47 -0.09 0.61 16 7 N -0.87 -22.11 7.58 55.50 0.42 -21.69 16 8 Si 0.93 20.42 29.57 -169.99 -5.03 15.39 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.47 11.30 6.77 -10.99 -0.07 11.23 16 13 O -0.59 -15.75 16.33 5.54 0.09 -15.66 16 14 C -0.17 -3.35 1.31 -156.81 -0.21 -3.56 16 15 C 0.56 10.89 5.12 -10.99 -0.06 10.83 16 16 O -0.50 -10.33 11.91 5.54 0.07 -10.27 16 17 N -0.66 -11.68 5.21 -9.75 -0.05 -11.73 16 18 C 0.09 1.38 6.29 -83.49 -0.52 0.85 16 19 C 0.12 1.82 6.69 -39.26 -0.26 1.56 16 20 F -0.11 -1.81 13.43 2.25 0.03 -1.78 16 21 C -0.15 -1.59 10.02 -39.53 -0.40 -1.99 16 22 C -0.08 -0.73 10.04 -39.56 -0.40 -1.13 16 23 C -0.15 -1.51 10.02 -39.53 -0.40 -1.91 16 24 C 0.10 1.42 7.31 -39.26 -0.29 1.13 16 25 F -0.12 -1.92 16.95 2.25 0.04 -1.88 16 26 C -0.13 -2.20 9.76 -26.69 -0.26 -2.46 16 27 C -0.13 -2.22 8.34 -26.69 -0.22 -2.44 16 28 H 0.10 2.48 5.80 -51.93 -0.30 2.18 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.52 5.13 -51.93 -0.27 0.25 16 31 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 32 H 0.04 0.88 4.49 -51.93 -0.23 0.65 16 33 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.42 7.28 8.56 -40.82 -0.35 6.93 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.11 1.86 8.01 -51.93 -0.42 1.44 16 40 H 0.11 1.92 6.72 -51.93 -0.35 1.57 16 41 H 0.11 1.75 7.83 -51.93 -0.41 1.34 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -31.09 344.50 -6.79 -37.88 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.26 Total: 11.45 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.98 Total: 4.22 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.07 Total: -44.54 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: 0.16 Total: -25.93 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.66 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.09 -6.79 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594248662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.266 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds