Wall clock time and date at job start Tue Mar 31 2020 20:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46841 * 2 1 4 4 C 1.37098 * 119.99673 * 269.84072 * 3 2 1 5 5 H 1.08004 * 120.00235 * 190.73219 * 4 3 2 6 6 C 1.38952 * 120.00077 * 10.74068 * 4 3 2 7 7 N 1.31407 * 120.00116 * 12.98688 * 6 4 3 8 8 Si 1.86801 * 119.99792 * 192.98963 * 6 4 3 9 9 H 1.48500 * 109.47169 * 59.99791 * 8 6 4 10 10 H 1.48506 * 109.47204 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47514 * 299.99503 * 8 6 4 12 12 C 1.34774 * 120.00260 * 89.84411 * 3 2 1 13 13 O 1.21295 * 120.00017 * 182.25520 * 12 3 2 14 14 C 1.50695 * 119.99975 * 2.26664 * 12 3 2 15 15 C 1.50699 * 115.55316 * 66.15159 * 14 12 3 16 16 O 1.21299 * 119.99647 * 235.47870 * 15 14 12 17 17 N 1.34774 * 119.99917 * 55.20666 * 15 14 12 18 18 C 1.40167 * 119.99710 * 177.48456 * 17 15 14 19 19 C 1.38983 * 120.08656 * 325.64016 * 18 17 15 20 20 F 1.35098 * 120.04245 * 0.02562 * 19 18 17 21 21 C 1.38351 * 119.91321 * 179.77417 * 19 18 17 22 22 C 1.38265 * 120.08231 * 0.50397 * 21 19 18 23 23 C 1.38267 * 120.17506 * 359.74555 * 22 21 19 24 24 C 1.38347 * 120.08568 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.04481 * 180.02562 * 24 23 22 26 26 C 1.53004 * 117.49681 * 211.82490 * 14 12 3 27 27 C 1.53002 * 117.49487 * 280.48171 * 14 12 3 28 28 H 1.08993 * 109.47391 * 61.94279 * 1 2 3 29 29 H 1.08995 * 109.46946 * 181.94931 * 1 2 3 30 30 H 1.08998 * 109.46955 * 301.94262 * 1 2 3 31 31 H 1.08999 * 109.46690 * 239.99772 * 2 1 3 32 32 H 1.08995 * 109.46779 * 119.99612 * 2 1 3 33 33 H 0.96996 * 120.00247 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99973 * 357.48344 * 17 15 14 35 35 H 1.07992 * 119.95717 * 180.25282 * 21 19 18 36 36 H 1.08002 * 119.91394 * 179.77309 * 22 21 19 37 37 H 1.08003 * 119.95892 * 179.97438 * 23 22 21 38 38 H 1.08999 * 117.49634 * 214.99795 * 26 14 12 39 39 H 1.08999 * 117.49978 * 0.02562 * 26 14 12 40 40 H 1.08999 * 117.50151 * 359.97438 * 27 14 12 41 41 H 1.09003 * 117.49954 * 145.00060 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2499 2.0263 -1.1873 5 1 2.7694 2.9732 -1.1951 6 6 1.8161 1.4621 -2.3807 7 7 0.9716 0.4555 -2.3629 8 14 2.4335 2.1345 -4.0105 9 1 3.9118 2.0078 -4.0702 10 1 1.8257 1.3649 -5.1257 11 1 2.0541 3.5651 -4.1314 12 6 2.2399 2.0177 1.1671 13 8 2.6050 3.1744 1.1674 14 6 2.0345 1.2921 2.4719 15 6 2.9839 0.1526 2.7385 16 8 2.5503 -0.9549 2.9769 17 7 4.3148 0.3629 2.7068 18 6 5.1970 -0.6842 3.0066 19 6 4.8520 -1.6345 3.9602 20 9 3.6650 -1.5509 4.5998 21 6 5.7236 -2.6692 4.2500 22 6 6.9409 -2.7526 3.5996 23 6 7.2899 -1.8062 2.6540 24 6 6.4218 -0.7712 2.3554 25 9 6.7635 0.1528 1.4309 26 6 1.5654 2.1166 3.6724 27 6 0.5992 1.1501 2.9827 28 1 -0.3634 0.4833 -0.9068 29 1 -0.3633 -1.0270 0.0350 30 1 -0.3633 0.5437 0.8720 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.6691 0.0613 -3.1959 34 1 4.6620 1.2389 2.4765 35 1 5.4545 -3.4103 4.9879 36 1 7.6207 -3.5594 3.8306 37 1 8.2419 -1.8745 2.1484 38 1 1.9436 1.8348 4.6551 39 1 1.4051 3.1837 3.5184 40 1 -0.1962 1.5819 2.3753 41 1 0.3418 0.2325 3.5117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594248662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:58 Heat of formation + Delta-G solvation = -90.710386 kcal Electronic energy + Delta-G solvation = -30828.220904 eV Core-core repulsion = 26345.882922 eV Total energy + Delta-G solvation = -4482.337982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.11282 -49.88740 -42.04044 -40.40274 -39.40161 -37.51766 -36.77407 -35.99670 -33.69601 -31.34599 -31.31092 -30.88178 -27.82307 -26.04454 -24.38546 -24.13748 -23.69094 -23.42303 -22.34197 -20.63423 -19.45071 -19.17678 -18.75936 -18.54488 -18.08962 -17.32773 -17.00261 -16.72452 -16.60359 -16.39810 -16.16395 -16.11889 -15.93112 -15.61080 -15.38970 -15.04038 -14.91138 -14.62755 -14.05993 -13.84051 -13.66469 -13.21994 -13.14458 -12.99214 -12.92540 -12.74962 -12.73221 -12.57631 -12.21395 -12.16559 -11.94640 -11.81105 -11.58698 -11.55597 -11.14927 -10.85111 -10.39915 -9.79753 -9.75556 -9.41479 -8.27218 -5.96191 -0.17374 -0.05817 1.18858 1.34409 1.39916 1.49771 1.62281 1.83029 2.19343 2.36153 2.57067 2.76102 2.96797 3.07032 3.30868 3.46803 3.69101 3.69400 3.78428 3.80408 3.84105 4.18579 4.32652 4.44775 4.52371 4.61573 4.72228 4.75150 4.87288 4.94379 4.94850 5.03160 5.07853 5.14710 5.15995 5.17780 5.35164 5.46212 5.74724 5.91885 5.95668 5.99248 6.45773 6.77014 7.09074 7.38695 7.92305 8.61327 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.004703 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.370783 B = 5952.552934 C = 7018.080342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.129 3.871 3 N -0.433 5.433 4 C -0.344 4.344 5 H 0.080 0.920 6 C -0.001 4.001 7 N -0.873 5.873 8 Si 0.991 3.009 9 H -0.274 1.274 10 H -0.268 1.268 11 H -0.273 1.273 12 C 0.464 3.536 13 O -0.622 6.622 14 C -0.193 4.193 15 C 0.561 3.439 16 O -0.517 6.517 17 N -0.664 5.664 18 C 0.051 3.949 19 C 0.097 3.903 20 F -0.127 7.127 21 C -0.138 4.138 22 C -0.059 4.059 23 C -0.134 4.134 24 C 0.078 3.922 25 F -0.142 7.142 26 C -0.111 4.111 27 C -0.118 4.118 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.273 0.727 34 H 0.418 0.582 35 H 0.173 0.827 36 H 0.194 0.806 37 H 0.176 0.824 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.576 -9.148 12.428 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.006 3.994 3 N -0.149 5.149 4 C -0.471 4.471 5 H 0.098 0.902 6 C -0.203 4.203 7 N -0.511 5.511 8 Si 0.815 3.185 9 H -0.199 1.199 10 H -0.192 1.192 11 H -0.199 1.199 12 C 0.252 3.748 13 O -0.511 6.511 14 C -0.199 4.199 15 C 0.349 3.651 16 O -0.393 6.393 17 N -0.308 5.308 18 C -0.045 4.045 19 C 0.075 3.925 20 F -0.105 7.105 21 C -0.157 4.157 22 C -0.077 4.077 23 C -0.153 4.153 24 C 0.056 3.944 25 F -0.121 7.121 26 C -0.148 4.148 27 C -0.155 4.155 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.254 0.746 35 H 0.191 0.809 36 H 0.211 0.789 37 H 0.194 0.806 38 H 0.143 0.857 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.222 -9.461 12.381 18.107 hybrid contribution -0.061 1.296 -1.373 1.890 sum 9.161 -8.165 11.008 16.485 Atomic orbital electron populations 1.22161 0.94980 1.00550 1.01860 1.21452 0.96193 0.81944 0.99763 1.43962 1.54323 1.12181 1.04458 1.19734 1.36815 1.06742 0.83822 0.90204 1.26036 0.95110 0.96993 1.02205 1.70224 1.28243 1.24205 1.28455 0.85029 0.78444 0.78288 0.76762 1.19941 1.19240 1.19868 1.19076 0.85499 0.86348 0.83911 1.90480 1.54770 1.18653 1.87167 1.21152 1.00410 1.01105 0.97231 1.19417 0.81837 0.88638 0.75229 1.90729 1.77348 1.24316 1.46864 1.43375 1.05357 1.13387 1.68695 1.18158 0.92396 0.94266 0.99686 1.17677 0.83553 0.97867 0.93428 1.91563 1.43746 1.95936 1.79255 1.21559 0.94094 0.97112 1.02974 1.21388 0.95349 0.98374 0.92601 1.21527 1.00685 0.92735 1.00370 1.17655 0.94400 0.91428 0.90869 1.91514 1.92078 1.64829 1.63647 1.23129 0.99646 0.98379 0.93665 1.23147 0.89001 1.02244 1.01117 0.90419 0.93074 0.94493 0.90581 0.93854 0.91634 0.74559 0.80925 0.78888 0.80636 0.85702 0.87255 0.87740 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.22 9.57 71.98 0.69 -5.53 16 2 C 0.13 6.37 5.11 86.38 0.44 6.81 16 3 N -0.43 -23.10 2.62 -635.54 -1.67 -24.76 16 4 C -0.34 -19.60 9.48 84.04 0.80 -18.80 16 5 H 0.08 4.83 7.26 -2.91 -0.02 4.81 16 6 C 0.00 -0.07 5.17 84.93 0.44 0.37 16 7 N -0.87 -44.95 7.58 21.66 0.16 -44.78 16 8 Si 0.99 42.34 29.57 68.60 2.03 44.37 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 C 0.46 23.40 6.77 87.66 0.59 23.99 16 13 O -0.62 -35.02 16.33 -3.08 -0.05 -35.07 16 14 C -0.19 -7.75 1.31 -53.67 -0.07 -7.82 16 15 C 0.56 22.27 5.12 87.66 0.45 22.71 16 16 O -0.52 -21.57 11.91 -3.09 -0.04 -21.61 16 17 N -0.66 -24.33 5.21 -303.14 -1.58 -25.91 16 18 C 0.05 1.62 6.29 38.17 0.24 1.86 16 19 C 0.10 2.75 6.69 22.48 0.15 2.90 16 20 F -0.13 -4.23 13.43 44.97 0.60 -3.63 16 21 C -0.14 -2.50 10.02 22.30 0.22 -2.28 16 22 C -0.06 -0.75 10.04 22.28 0.22 -0.53 16 23 C -0.13 -2.34 10.02 22.30 0.22 -2.11 16 24 C 0.08 2.14 7.31 22.48 0.16 2.30 16 25 F -0.14 -4.51 16.95 44.97 0.76 -3.75 16 26 C -0.11 -3.57 9.76 30.62 0.30 -3.27 16 27 C -0.12 -4.01 8.34 30.62 0.26 -3.75 16 28 H 0.08 3.89 5.80 -2.39 -0.01 3.88 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.04 1.54 5.13 -2.39 -0.01 1.53 16 31 H 0.08 4.07 6.03 -2.39 -0.01 4.05 16 32 H 0.04 2.08 4.49 -2.39 -0.01 2.07 16 33 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 34 H 0.42 15.41 8.56 -92.71 -0.79 14.61 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.11 3.61 8.01 -2.39 -0.02 3.59 16 40 H 0.10 3.65 6.72 -2.39 -0.02 3.63 16 41 H 0.12 3.81 7.83 -2.39 -0.02 3.79 16 Total: -1.00 -71.53 344.50 5.66 -65.87 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.32 Total: 32.42 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 5.12 Total: 16.86 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -3.08 Total: -95.45 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.09 Total: -56.68 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 1.37 Total: -7.38 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -71.53 5.66 -65.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594248662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.845 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds