Wall clock time and date at job start Tue Mar 31 2020 21:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35927 * 116.99766 * 2 1 4 4 C 1.38707 * 120.05990 * 359.97438 * 3 2 1 5 5 C 1.38149 * 119.95805 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.07515 * 359.72188 * 5 4 3 7 7 C 1.38239 * 120.11714 * 0.55586 * 6 5 4 8 8 C 1.50708 * 119.97911 * 179.72489 * 7 6 5 9 9 C 1.50697 * 109.46978 * 264.72288 * 8 7 6 10 10 O 1.21281 * 120.00229 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99950 * 179.97438 * 9 8 7 12 12 C 1.46969 * 120.59494 * 179.97438 * 11 9 8 13 13 C 1.53365 * 108.63823 * 235.20709 * 12 11 9 14 14 N 1.46971 * 108.63406 * 310.57818 * 13 12 11 15 15 C 1.36933 * 120.58954 * 235.20080 * 14 13 12 16 16 H 1.08004 * 119.99676 * 151.84704 * 15 14 13 17 17 C 1.38804 * 120.00274 * 331.57456 * 15 14 13 18 18 N 1.31613 * 120.00257 * 342.82344 * 17 15 14 19 19 Si 1.86809 * 120.00042 * 162.81945 * 17 15 14 20 20 H 1.48504 * 109.46931 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46750 * 119.99895 * 19 17 15 22 22 H 1.48498 * 109.47076 * 239.99975 * 19 17 15 23 23 C 1.46964 * 118.81046 * 55.47559 * 14 13 12 24 24 C 1.46965 * 120.59583 * 359.97438 * 11 9 8 25 25 C 1.38262 * 120.04473 * 359.44629 * 7 6 5 26 26 Cl 1.73597 * 120.03731 * 180.29830 * 25 7 6 27 27 H 1.09005 * 109.47353 * 300.00198 * 1 2 3 28 28 H 1.08995 * 109.47485 * 59.99981 * 1 2 3 29 29 H 1.09006 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.02353 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96440 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.94062 * 180.27768 * 6 5 4 33 33 H 1.09002 * 109.47192 * 144.72091 * 8 7 6 34 34 H 1.08997 * 109.46733 * 24.72204 * 8 7 6 35 35 H 1.09001 * 109.60759 * 115.45972 * 12 11 9 36 36 H 1.08997 * 109.60686 * 354.95459 * 12 11 9 37 37 H 1.08993 * 109.61301 * 190.83327 * 13 12 11 38 38 H 1.09004 * 109.75220 * 70.40370 * 13 12 11 39 39 H 0.97004 * 120.00510 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.60931 * 64.27031 * 23 14 13 41 41 H 1.09004 * 109.60392 * 184.78099 * 23 14 13 42 42 H 1.09002 * 109.60509 * 244.54045 * 24 11 9 43 43 H 1.09000 * 109.60856 * 4.87330 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2917 2.3752 -0.0005 5 6 1.9210 3.6050 -0.0011 6 6 3.3020 3.6768 0.0047 7 6 4.0568 2.5187 -0.0005 8 6 5.5617 2.6006 -0.0004 9 6 6.0701 2.5037 -1.4157 10 8 5.2876 2.3798 -2.3340 11 7 7.3943 2.5547 -1.6610 12 6 7.9045 2.4608 -3.0362 13 6 8.9162 1.3103 -3.1061 14 7 9.8759 1.4611 -2.0033 15 6 11.2213 1.5128 -2.2526 16 1 11.8744 2.0521 -1.5824 17 6 11.7467 0.8675 -3.3636 18 7 11.0429 -0.0571 -3.9815 19 14 13.4527 1.3115 -3.9818 20 1 14.0313 2.3725 -3.1187 21 1 14.3233 0.1092 -3.9384 22 1 13.3598 1.8053 -5.3792 23 6 9.3660 1.5493 -0.6278 24 6 8.3541 2.7051 -0.5583 25 6 3.4321 1.2853 0.0000 26 17 4.3802 -0.1690 0.0012 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2132 2.3202 -0.0014 31 1 1.3338 4.5114 -0.0011 32 1 3.7917 4.6394 0.0088 33 1 5.9702 1.7800 0.5894 34 1 5.8737 3.5505 0.4335 35 1 8.3940 3.3956 -3.3093 36 1 7.0788 2.2640 -3.7200 37 1 9.4449 1.3455 -4.0586 38 1 8.3967 0.3567 -3.0111 39 1 11.4101 -0.5084 -4.7577 40 1 8.8758 0.6138 -0.3587 41 1 10.1920 1.7425 0.0568 42 1 8.8757 3.6574 -0.6548 43 1 7.8250 2.6728 0.3941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597273213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:14 Heat of formation + Delta-G solvation = -18.445081 kcal Electronic energy + Delta-G solvation = -27149.145054 eV Core-core repulsion = 23221.737411 eV Total energy + Delta-G solvation = -3927.407643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50968 -39.53554 -37.82181 -36.64390 -36.29679 -33.87597 -32.74518 -31.15907 -30.60202 -30.29475 -28.06556 -27.39728 -26.47286 -23.65908 -22.90860 -22.72461 -21.75141 -20.38707 -18.69378 -17.91143 -17.17461 -16.75447 -16.47828 -16.14708 -15.95594 -15.36717 -15.07948 -14.76733 -14.38557 -14.09104 -13.73965 -13.66117 -13.52963 -13.41670 -13.22558 -12.80656 -12.63173 -12.29934 -12.10160 -11.78208 -11.66583 -11.53906 -11.31319 -11.26963 -11.20245 -10.83508 -10.71385 -10.62942 -10.53421 -10.22393 -9.95498 -9.81914 -9.42009 -8.80145 -8.57891 -8.31704 -8.19875 -6.69620 -5.83322 -3.28899 0.98637 1.17493 2.23876 2.97085 3.03024 3.32546 3.34731 3.42683 3.44553 3.65338 4.42675 4.45172 4.58104 4.77951 4.87253 4.91202 4.94790 4.99377 5.06393 5.20922 5.27163 5.32932 5.34055 5.47994 5.62314 5.75749 5.78853 5.88572 5.90365 6.10333 6.16593 6.26451 6.36000 6.40745 6.44289 6.53543 6.72433 6.89907 7.06803 7.29334 7.57700 7.73862 7.94317 8.37604 8.61082 9.13369 9.76248 10.33230 11.23945 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002735 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.846015 B =10234.976077 C =10664.392020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.136 3.864 4 C -0.203 4.203 5 C -0.076 4.076 6 C -0.134 4.134 7 C -0.012 4.012 8 C -0.109 4.109 9 C 0.515 3.485 10 O -0.544 6.544 11 N -0.596 5.596 12 C 0.089 3.911 13 C 0.159 3.841 14 N -0.591 5.591 15 C -0.257 4.257 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.288 1.288 23 C 0.130 3.870 24 C 0.088 3.912 25 C -0.054 4.054 26 Cl -0.048 7.048 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.023 0.977 39 H 0.255 0.745 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.869 6.422 11.400 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.090 3.910 4 C -0.222 4.222 5 C -0.094 4.094 6 C -0.153 4.153 7 C -0.014 4.014 8 C -0.148 4.148 9 C 0.303 3.697 10 O -0.423 6.423 11 N -0.329 5.329 12 C -0.034 4.034 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.544 5.544 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.003 3.997 24 C -0.037 4.037 25 C -0.081 4.081 26 Cl -0.019 7.019 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.027 5.913 10.759 23.490 hybrid contribution 0.763 0.110 -0.364 0.852 sum -19.264 6.024 10.395 22.703 Atomic orbital electron populations 1.23090 0.78247 1.04150 1.01313 1.86173 1.21367 1.25942 1.88370 1.18599 0.90373 0.85149 0.96927 1.21136 1.00000 0.91774 1.09255 1.20935 0.94410 0.97110 0.96970 1.20870 0.93673 0.97473 1.03257 1.19044 0.94767 0.90877 0.96681 1.20785 0.91526 1.05508 0.97031 1.20139 0.82313 0.77093 0.90198 1.90677 1.55196 1.50303 1.46081 1.48031 1.04821 1.71057 1.09005 1.22484 0.98264 1.01231 0.81461 1.21181 0.88854 0.92340 0.94395 1.44021 1.02753 1.85315 0.99306 1.19220 0.83090 1.26382 1.09914 0.91432 1.25095 0.97888 0.95917 1.00667 1.70032 1.37914 1.24140 1.22281 0.86215 0.83983 0.77816 0.78673 1.20210 1.21707 1.21478 1.21355 0.94934 0.94265 0.89147 1.22473 0.91801 1.01119 0.88331 1.20008 0.88810 0.88737 1.10547 1.98382 1.71377 1.35341 1.96826 0.92615 0.92515 0.88049 0.84838 0.85198 0.85074 0.87380 0.87618 0.92247 0.90173 0.88324 0.95864 0.93504 0.95817 0.91491 0.91493 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.72 9.96 -19.51 -0.19 -3.92 16 3 C 0.14 1.76 6.68 -39.20 -0.26 1.50 16 4 C -0.20 -2.08 9.04 -39.44 -0.36 -2.44 16 5 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 6 C -0.13 -1.51 9.67 -39.56 -0.38 -1.90 16 7 C -0.01 -0.17 4.37 -104.61 -0.46 -0.63 16 8 C -0.11 -1.44 3.68 -29.03 -0.11 -1.55 16 9 C 0.52 9.04 7.69 -10.99 -0.08 8.96 16 10 O -0.54 -11.37 15.44 5.56 0.09 -11.28 16 11 N -0.60 -10.84 2.95 -172.24 -0.51 -11.35 16 12 C 0.09 1.82 6.59 -3.60 -0.02 1.79 16 13 C 0.16 3.83 5.51 -3.60 -0.02 3.81 16 14 N -0.59 -14.45 2.96 -171.79 -0.51 -14.96 16 15 C -0.26 -6.83 9.57 -15.06 -0.14 -6.97 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.09 4.91 -17.44 -0.09 0.01 16 18 N -0.90 -25.92 11.20 55.49 0.62 -25.30 16 19 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.13 2.57 6.70 -3.39 -0.02 2.55 16 24 C 0.09 1.40 6.52 -3.38 -0.02 1.38 16 25 C -0.05 -0.78 6.33 -39.36 -0.25 -1.03 16 26 Cl -0.05 -0.76 26.95 -51.86 -1.40 -2.15 16 27 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.11 1.38 6.71 -51.93 -0.35 1.04 16 34 H 0.11 1.07 7.81 -51.93 -0.41 0.66 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.67 6.99 -51.93 -0.36 1.30 16 37 H 0.10 2.63 6.00 -51.93 -0.31 2.31 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.89 5.91 -51.93 -0.31 0.58 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -33.43 363.49 -8.86 -42.29 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.78 Total: -0.59 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.62 Total: 5.52 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.39 Total: -51.61 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.11 Total: -15.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.40 Total: -2.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.43 -8.86 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597273213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.843 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds