Wall clock time and date at job start Tue Mar 31 2020 21:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35927 * 116.99766 * 2 1 4 4 C 1.38707 * 120.05990 * 359.97438 * 3 2 1 5 5 C 1.38149 * 119.95805 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.07515 * 359.72188 * 5 4 3 7 7 C 1.38239 * 120.11714 * 0.55586 * 6 5 4 8 8 C 1.50708 * 119.97911 * 179.72489 * 7 6 5 9 9 C 1.50697 * 109.46978 * 264.72288 * 8 7 6 10 10 O 1.21281 * 120.00229 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99950 * 179.97438 * 9 8 7 12 12 C 1.46969 * 120.59494 * 179.97438 * 11 9 8 13 13 C 1.53365 * 108.63823 * 235.20709 * 12 11 9 14 14 N 1.46971 * 108.63406 * 310.57818 * 13 12 11 15 15 C 1.36933 * 120.58954 * 235.20080 * 14 13 12 16 16 H 1.08004 * 119.99676 * 151.84704 * 15 14 13 17 17 C 1.38804 * 120.00274 * 331.57456 * 15 14 13 18 18 N 1.31613 * 120.00257 * 342.82344 * 17 15 14 19 19 Si 1.86809 * 120.00042 * 162.81945 * 17 15 14 20 20 H 1.48504 * 109.46931 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46750 * 119.99895 * 19 17 15 22 22 H 1.48498 * 109.47076 * 239.99975 * 19 17 15 23 23 C 1.46964 * 118.81046 * 55.47559 * 14 13 12 24 24 C 1.46965 * 120.59583 * 359.97438 * 11 9 8 25 25 C 1.38262 * 120.04473 * 359.44629 * 7 6 5 26 26 Cl 1.73597 * 120.03731 * 180.29830 * 25 7 6 27 27 H 1.09005 * 109.47353 * 300.00198 * 1 2 3 28 28 H 1.08995 * 109.47485 * 59.99981 * 1 2 3 29 29 H 1.09006 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.02353 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96440 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.94062 * 180.27768 * 6 5 4 33 33 H 1.09002 * 109.47192 * 144.72091 * 8 7 6 34 34 H 1.08997 * 109.46733 * 24.72204 * 8 7 6 35 35 H 1.09001 * 109.60759 * 115.45972 * 12 11 9 36 36 H 1.08997 * 109.60686 * 354.95459 * 12 11 9 37 37 H 1.08993 * 109.61301 * 190.83327 * 13 12 11 38 38 H 1.09004 * 109.75220 * 70.40370 * 13 12 11 39 39 H 0.97004 * 120.00510 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.60931 * 64.27031 * 23 14 13 41 41 H 1.09004 * 109.60392 * 184.78099 * 23 14 13 42 42 H 1.09002 * 109.60509 * 244.54045 * 24 11 9 43 43 H 1.09000 * 109.60856 * 4.87330 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2917 2.3752 -0.0005 5 6 1.9210 3.6050 -0.0011 6 6 3.3020 3.6768 0.0047 7 6 4.0568 2.5187 -0.0005 8 6 5.5617 2.6006 -0.0004 9 6 6.0701 2.5037 -1.4157 10 8 5.2876 2.3798 -2.3340 11 7 7.3943 2.5547 -1.6610 12 6 7.9045 2.4608 -3.0362 13 6 8.9162 1.3103 -3.1061 14 7 9.8759 1.4611 -2.0033 15 6 11.2213 1.5128 -2.2526 16 1 11.8744 2.0521 -1.5824 17 6 11.7467 0.8675 -3.3636 18 7 11.0429 -0.0571 -3.9815 19 14 13.4527 1.3115 -3.9818 20 1 14.0313 2.3725 -3.1187 21 1 14.3233 0.1092 -3.9384 22 1 13.3598 1.8053 -5.3792 23 6 9.3660 1.5493 -0.6278 24 6 8.3541 2.7051 -0.5583 25 6 3.4321 1.2853 0.0000 26 17 4.3802 -0.1690 0.0012 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2132 2.3202 -0.0014 31 1 1.3338 4.5114 -0.0011 32 1 3.7917 4.6394 0.0088 33 1 5.9702 1.7800 0.5894 34 1 5.8737 3.5505 0.4335 35 1 8.3940 3.3956 -3.3093 36 1 7.0788 2.2640 -3.7200 37 1 9.4449 1.3455 -4.0586 38 1 8.3967 0.3567 -3.0111 39 1 11.4101 -0.5084 -4.7577 40 1 8.8758 0.6138 -0.3587 41 1 10.1920 1.7425 0.0568 42 1 8.8757 3.6574 -0.6548 43 1 7.8250 2.6728 0.3941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597273213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:13 Heat of formation + Delta-G solvation = -39.018562 kcal Electronic energy + Delta-G solvation = -27150.037187 eV Core-core repulsion = 23221.737411 eV Total energy + Delta-G solvation = -3928.299776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48075 -40.78001 -38.85336 -38.15039 -37.33934 -35.62064 -33.78774 -33.02856 -31.95548 -31.34133 -29.24816 -28.36749 -27.79887 -25.43177 -24.45297 -23.61261 -22.87556 -21.86499 -20.15078 -18.87114 -18.74293 -17.81301 -17.61323 -17.30209 -16.81862 -16.75380 -16.64967 -16.27866 -15.47991 -15.31816 -15.26912 -15.02925 -14.88313 -14.74692 -14.54658 -14.04248 -13.88422 -13.38468 -13.18887 -13.08840 -12.88066 -12.76403 -12.66041 -12.50786 -12.44250 -12.24428 -12.09683 -12.04824 -11.97442 -11.86465 -11.66194 -11.64880 -10.83029 -10.61932 -9.79507 -9.72799 -9.17629 -8.65858 -7.88052 -5.37351 0.11353 0.32921 1.23588 1.47250 1.49541 1.59949 1.67694 2.06278 2.28480 2.51015 2.65962 3.26874 3.52420 3.60475 3.71339 3.88466 4.03515 4.13196 4.25979 4.27128 4.32118 4.35997 4.39518 4.41611 4.45945 4.55223 4.62583 4.68739 4.72529 4.76047 4.83470 4.91943 5.06606 5.09973 5.25842 5.30768 5.43469 5.46957 5.61525 5.67246 5.70273 6.31765 6.35322 6.55081 7.09170 7.22513 7.79180 8.32962 9.17299 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002735 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.846015 B =10234.976077 C =10664.392020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.119 3.881 4 C -0.199 4.199 5 C -0.070 4.070 6 C -0.139 4.139 7 C -0.033 4.033 8 C -0.100 4.100 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.603 5.603 12 C 0.105 3.895 13 C 0.171 3.829 14 N -0.609 5.609 15 C -0.259 4.259 16 H 0.078 0.922 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.261 1.261 21 H -0.296 1.296 22 H -0.292 1.292 23 C 0.124 3.876 24 C 0.097 3.903 25 C -0.084 4.084 26 Cl -0.077 7.077 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.068 0.932 38 H -0.014 1.014 39 H 0.249 0.751 40 H 0.011 0.989 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.175 9.326 13.434 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.073 3.927 4 C -0.218 4.218 5 C -0.088 4.088 6 C -0.157 4.157 7 C -0.034 4.034 8 C -0.139 4.139 9 C 0.304 3.696 10 O -0.462 6.462 11 N -0.335 5.335 12 C -0.019 4.019 13 C 0.045 3.955 14 N -0.332 5.332 15 C -0.389 4.389 16 H 0.096 0.904 17 C -0.249 4.249 18 N -0.585 5.585 19 Si 0.798 3.202 20 H -0.185 1.185 21 H -0.223 1.223 22 H -0.219 1.219 23 C -0.002 4.002 24 C -0.026 4.026 25 C -0.112 4.112 26 Cl -0.048 7.048 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.182 0.818 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.129 0.871 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.004 0.996 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.346 8.842 12.850 26.438 hybrid contribution 1.019 -0.810 -0.944 1.608 sum -20.327 8.032 11.906 24.889 Atomic orbital electron populations 1.23400 0.75957 1.05663 1.02647 1.86139 1.23863 1.26196 1.88403 1.18873 0.90214 0.86308 0.97320 1.21546 1.01467 0.91041 1.07706 1.21422 0.94250 0.98277 0.94854 1.21245 0.94482 0.97581 1.02404 1.19208 0.94927 0.91297 0.97976 1.20801 0.91761 1.07685 0.93693 1.20903 0.81464 0.75497 0.91766 1.90656 1.56037 1.51697 1.47826 1.48114 1.05760 1.71292 1.08339 1.22039 0.96822 0.99677 0.83401 1.20845 0.89122 0.92197 0.93378 1.44282 1.02331 1.85421 1.01173 1.19620 0.84217 1.25366 1.09717 0.90438 1.25894 1.01566 0.96143 1.01297 1.70203 1.39755 1.25745 1.22791 0.85172 0.79687 0.77480 0.77868 1.18452 1.22291 1.21921 1.21585 0.96407 0.95410 0.86843 1.22503 0.90878 0.99687 0.89531 1.20351 0.89631 0.88223 1.12960 1.98359 1.72157 1.37165 1.97119 0.90702 0.91578 0.86672 0.81846 0.81520 0.82705 0.87072 0.83620 0.91357 0.91139 0.91388 0.99612 0.94149 0.97144 0.89969 0.90007 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.94 9.96 -92.73 -0.92 -8.86 16 3 C 0.12 2.96 6.68 22.52 0.15 3.11 16 4 C -0.20 -3.51 9.04 22.36 0.20 -3.31 16 5 C -0.07 -1.10 10.04 22.26 0.22 -0.88 16 6 C -0.14 -2.67 9.67 22.28 0.22 -2.45 16 7 C -0.03 -0.83 4.37 -19.86 -0.09 -0.91 16 8 C -0.10 -2.41 3.68 29.10 0.11 -2.31 16 9 C 0.51 17.45 7.69 87.66 0.67 18.12 16 10 O -0.58 -24.31 15.44 -3.03 -0.05 -24.36 16 11 N -0.60 -21.24 2.95 -817.23 -2.41 -23.65 16 12 C 0.11 4.36 6.59 86.41 0.57 4.93 16 13 C 0.17 8.64 5.51 86.41 0.48 9.12 16 14 N -0.61 -30.05 2.96 -697.42 -2.06 -32.12 16 15 C -0.26 -13.81 9.57 84.03 0.80 -13.01 16 16 H 0.08 3.91 7.89 -2.91 -0.02 3.89 16 17 C -0.05 -2.98 4.91 84.86 0.42 -2.57 16 18 N -0.94 -56.28 11.20 21.65 0.24 -56.04 16 19 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 C 0.12 4.75 6.70 86.55 0.58 5.33 16 24 C 0.10 2.84 6.52 86.55 0.56 3.41 16 25 C -0.08 -2.43 6.33 22.41 0.14 -2.28 16 26 Cl -0.08 -2.47 26.95 -2.72 -0.07 -2.55 16 27 H 0.07 0.64 7.66 -2.38 -0.02 0.62 16 28 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 29 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.16 1.76 6.30 -2.91 -0.02 1.74 16 31 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.11 2.63 6.71 -2.39 -0.02 2.61 16 34 H 0.15 2.27 7.81 -2.39 -0.02 2.25 16 35 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.07 3.04 6.99 -2.39 -0.02 3.02 16 37 H 0.07 3.83 6.00 -2.39 -0.01 3.81 16 38 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.12 2.39 5.91 -2.39 -0.01 2.38 16 Total: -1.00 -76.98 363.49 3.94 -73.04 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.03 Total: 10.51 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.15 Total: 17.63 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -4.23 Total: -111.80 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.97 Total: -33.22 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.07 Total: -2.55 kcal Total: -76.98 3.94 -73.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597273213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.021 kcal (2) G-P(sol) polarization free energy of solvation -76.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds