Wall clock time and date at job start Tue Mar 31 2020 20:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46899 * 109.47123 * 2 1 4 4 C 1.47018 * 110.99894 * 290.59720 * 3 2 1 5 5 C 1.53099 * 109.25594 * 177.60958 * 4 3 2 6 6 O 1.43015 * 109.26002 * 56.84683 * 5 4 3 7 7 C 1.43011 * 113.74133 * 301.33396 * 6 5 4 8 8 C 1.47019 * 110.99985 * 166.96631 * 3 2 1 9 9 H 1.09005 * 109.50464 * 62.41133 * 8 3 2 10 10 C 1.50696 * 109.50396 * 302.32898 * 8 3 2 11 11 O 1.21286 * 120.00042 * 327.42149 * 10 8 3 12 12 N 1.34778 * 120.00169 * 147.42654 * 10 8 3 13 13 C 1.37133 * 119.99621 * 4.02744 * 12 10 8 14 14 H 1.07997 * 120.00266 * 310.48175 * 13 12 10 15 15 C 1.38886 * 119.99470 * 130.47891 * 13 12 10 16 16 N 1.31430 * 119.99629 * 169.63487 * 15 13 12 17 17 Si 1.86796 * 120.00498 * 349.63915 * 15 13 12 18 18 H 1.48502 * 109.47254 * 94.40770 * 17 15 13 19 19 H 1.48505 * 109.47144 * 334.41073 * 17 15 13 20 20 H 1.48495 * 109.47374 * 214.40725 * 17 15 13 21 21 C 1.39805 * 119.99989 * 184.02634 * 12 10 8 22 22 C 1.38955 * 120.06946 * 351.75819 * 21 12 10 23 23 C 1.38066 * 119.93800 * 179.74075 * 22 21 12 24 24 C 1.38416 * 120.06408 * 0.50760 * 23 22 21 25 25 Cl 1.73604 * 119.93733 * 179.74443 * 24 23 22 26 26 C 1.38418 * 120.13053 * 359.76670 * 24 23 22 27 27 C 1.38073 * 120.06403 * 359.97438 * 26 24 23 28 28 H 1.08999 * 109.46444 * 300.00005 * 1 2 3 29 29 H 1.08995 * 109.46982 * 59.99834 * 1 2 3 30 30 H 1.08996 * 109.46787 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46716 * 240.00346 * 2 1 3 32 32 H 1.08995 * 109.46982 * 120.00166 * 2 1 3 33 33 H 1.09000 * 109.51183 * 297.54394 * 4 3 2 34 34 H 1.08999 * 109.50553 * 57.63323 * 4 3 2 35 35 H 1.09004 * 109.50790 * 176.78974 * 5 4 3 36 36 H 1.09006 * 109.50410 * 296.91277 * 5 4 3 37 37 H 1.08999 * 109.50431 * 298.73375 * 7 6 5 38 38 H 1.09000 * 109.50487 * 178.60009 * 7 6 5 39 39 H 0.97006 * 119.99833 * 179.97438 * 16 15 13 40 40 H 1.08008 * 120.03137 * 359.97294 * 22 21 12 41 41 H 1.08001 * 119.96903 * 180.25269 * 23 22 21 42 42 H 1.08001 * 119.97010 * 179.97438 * 26 24 23 43 43 H 1.07996 * 120.03308 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7401 2.0426 -1.2848 5 6 2.2119 3.4977 -1.2204 6 8 3.6025 3.5284 -0.8877 7 6 3.9106 2.8971 0.3579 8 6 3.4560 1.4360 0.3095 9 1 4.0138 0.9059 -0.4626 10 6 3.7060 0.7866 1.6462 11 8 2.8684 0.8566 2.5206 12 7 4.8605 0.1281 1.8702 13 6 5.8415 0.1190 0.9121 14 1 5.5968 -0.1337 -0.1090 15 6 7.1499 0.4346 1.2550 16 7 8.1221 0.2310 0.3943 17 14 7.5278 1.1484 2.9393 18 1 7.9108 0.0534 3.8664 19 1 6.3247 1.8431 3.4639 20 1 8.6485 2.1162 2.8267 21 6 5.0577 -0.5455 3.0793 22 6 4.1440 -0.3979 4.1157 23 6 4.3387 -1.0686 5.3067 24 6 5.4482 -1.8793 5.4726 25 17 5.6932 -2.7159 6.9739 26 6 6.3632 -2.0239 4.4441 27 6 6.1710 -1.3598 3.2489 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.2705 1.5230 -2.0828 34 1 0.6685 2.0152 -1.4821 35 1 2.0587 3.9732 -2.1892 36 1 1.6435 4.0312 -0.4585 37 1 3.3916 3.4131 1.1656 38 1 4.9860 2.9381 0.5305 39 1 9.0358 0.4519 0.6336 40 1 3.2803 0.2381 3.9884 41 1 3.6266 -0.9574 6.1111 42 1 7.2283 -2.6568 4.5765 43 1 6.8850 -1.4733 2.4466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602352767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:09 Heat of formation + Delta-G solvation = -19.951498 kcal Electronic energy + Delta-G solvation = -28591.599834 eV Core-core repulsion = 24664.126868 eV Total energy + Delta-G solvation = -3927.472966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66177 -39.22467 -37.68980 -36.19571 -35.71994 -35.11985 -32.37865 -31.59577 -30.69836 -30.44434 -28.93754 -26.42997 -25.53467 -24.51298 -22.43781 -21.96412 -21.73276 -20.42916 -19.41795 -18.23703 -16.91462 -16.42247 -16.31471 -15.93991 -15.69629 -14.97028 -14.81026 -14.61747 -14.44783 -14.12573 -13.90594 -13.71441 -13.48821 -13.16292 -13.10120 -12.71385 -12.56742 -12.47685 -12.08049 -11.86741 -11.77308 -11.61879 -11.48724 -11.28729 -11.13761 -10.89948 -10.72449 -10.57906 -10.38895 -10.29635 -10.23363 -9.56558 -9.53394 -9.03410 -8.57177 -8.30020 -8.10691 -7.26113 -6.72417 -4.61587 1.65170 1.89548 2.61194 3.01597 3.13732 3.19158 3.23250 3.62360 3.93965 3.97577 4.26606 4.31635 4.67571 5.00251 5.08999 5.24406 5.30826 5.32298 5.42055 5.42716 5.49598 5.57896 5.58442 5.64682 5.74665 5.87106 5.96428 5.97095 5.99963 6.08657 6.16325 6.26062 6.28141 6.35795 6.53453 6.66514 6.90083 6.96634 7.05044 7.12250 7.16785 7.32646 7.47421 7.74822 7.97755 8.58872 8.88658 9.13618 10.31158 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.004620 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.594303 B = 6058.809297 C = 7456.224964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 N -0.519 5.519 4 C 0.019 3.981 5 C 0.061 3.939 6 O -0.378 6.378 7 C 0.084 3.916 8 C 0.049 3.951 9 H 0.085 0.915 10 C 0.506 3.494 11 O -0.534 6.534 12 N -0.402 5.402 13 C -0.376 4.376 14 H 0.112 0.888 15 C 0.087 3.913 16 N -0.847 5.847 17 Si 0.859 3.141 18 H -0.248 1.248 19 H -0.259 1.259 20 H -0.283 1.283 21 C 0.160 3.840 22 C -0.175 4.175 23 C -0.096 4.096 24 C -0.079 4.079 25 Cl -0.100 7.100 26 C -0.093 4.093 27 C -0.142 4.142 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.282 0.718 40 H 0.188 0.812 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 0.717 0.363 8.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 N -0.246 5.246 4 C -0.110 4.110 5 C -0.016 4.016 6 O -0.296 6.296 7 C 0.007 3.993 8 C -0.062 4.062 9 H 0.102 0.898 10 C 0.297 3.703 11 O -0.414 6.414 12 N -0.111 5.111 13 C -0.502 4.502 14 H 0.129 0.871 15 C -0.125 4.125 16 N -0.479 5.479 17 Si 0.684 3.316 18 H -0.173 1.173 19 H -0.183 1.183 20 H -0.210 1.210 21 C 0.063 3.937 22 C -0.195 4.195 23 C -0.115 4.115 24 C -0.107 4.107 25 Cl -0.072 7.072 26 C -0.113 4.113 27 C -0.162 4.162 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.204 0.796 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.498 1.081 1.000 8.624 hybrid contribution 0.906 -0.529 0.360 1.109 sum -7.592 0.552 1.361 7.733 Atomic orbital electron populations 1.21715 0.94803 1.01189 1.02125 1.22122 0.96157 0.88447 1.01170 1.62030 1.14461 1.17461 1.30600 1.22832 1.01677 0.95966 0.90490 1.22661 0.82950 0.95013 1.00999 1.88022 1.24243 1.77942 1.39432 1.22476 1.01995 0.88960 0.85913 1.22075 0.88926 0.98758 0.96426 0.89758 1.20457 0.82145 0.78593 0.89123 1.90220 1.46722 1.60072 1.44432 1.41483 1.15397 1.40818 1.13386 1.19017 0.87272 1.52545 0.91376 0.87081 1.25401 0.95391 0.93596 0.98067 1.69667 1.00781 1.41825 1.35665 0.87190 0.79662 0.80756 0.83989 1.17254 1.18327 1.20955 1.18522 0.94779 0.92650 0.87777 1.22789 1.02828 1.02672 0.91165 1.20931 0.96011 0.96495 0.98057 1.20795 0.99445 1.02533 0.87918 1.98298 1.96902 1.77972 1.33986 1.20715 0.98446 1.00110 0.91999 1.21086 0.99083 0.97920 0.98153 0.91676 0.93120 0.92575 0.95058 0.90165 0.93928 0.89506 0.88697 0.92385 0.92235 0.87128 0.90748 0.79605 0.85751 0.85685 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.91 37.16 0.37 -1.38 16 2 C 0.05 0.75 5.39 -3.82 -0.02 0.73 16 3 N -0.52 -8.43 4.27 -227.72 -0.97 -9.40 16 4 C 0.02 0.25 5.46 -3.71 -0.02 0.23 16 5 C 0.06 0.79 7.01 37.21 0.26 1.06 16 6 O -0.38 -6.31 10.83 -35.23 -0.38 -6.70 16 7 C 0.08 1.51 6.27 37.21 0.23 1.74 16 8 C 0.05 0.92 1.80 -68.75 -0.12 0.79 16 9 H 0.08 1.68 6.38 -51.93 -0.33 1.35 16 10 C 0.51 10.63 5.35 -10.99 -0.06 10.57 16 11 O -0.53 -11.59 12.29 5.55 0.07 -11.53 16 12 N -0.40 -8.98 2.28 -58.98 -0.13 -9.12 16 13 C -0.38 -8.91 8.13 -14.94 -0.12 -9.03 16 14 H 0.11 2.78 6.96 -52.49 -0.37 2.41 16 15 C 0.09 2.10 4.13 -17.48 -0.07 2.03 16 16 N -0.85 -21.46 13.96 55.49 0.77 -20.69 16 17 Si 0.86 19.51 24.21 -169.99 -4.12 15.40 16 18 H -0.25 -5.48 5.80 56.52 0.33 -5.15 16 19 H -0.26 -6.16 7.05 56.52 0.40 -5.76 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.16 3.52 4.53 -83.69 -0.38 3.14 16 22 C -0.17 -3.58 9.03 -39.38 -0.36 -3.94 16 23 C -0.10 -1.74 9.82 -39.58 -0.39 -2.13 16 24 C -0.08 -1.43 6.32 -39.45 -0.25 -1.68 16 25 Cl -0.10 -1.56 28.95 -51.86 -1.50 -3.06 16 26 C -0.09 -1.76 9.44 -39.58 -0.37 -2.14 16 27 C -0.14 -3.00 5.74 -39.37 -0.23 -3.22 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.55 6.62 -51.93 -0.34 0.20 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.08 1.44 6.13 -51.93 -0.32 1.12 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.96 6.51 -51.93 -0.34 0.62 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 39 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.19 3.94 4.57 -56.04 -0.26 3.68 16 41 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 42 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 43 H 0.15 3.34 5.56 -52.49 -0.29 3.05 16 LS Contribution 347.32 15.07 5.23 5.23 Total: -1.00 -25.77 347.32 -8.24 -34.00 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.68 Total: 9.10 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.53 Total: -3.25 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.33 Total: -39.21 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.31 Total: -18.22 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.12 Total: 15.40 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -1.50 Total: -3.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -25.77 -8.24 -34.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602352767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.051 kcal (2) G-P(sol) polarization free energy of solvation -25.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds