Wall clock time and date at job start Tue Mar 31 2020 20:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46899 * 109.47123 * 2 1 4 4 C 1.47018 * 110.99894 * 290.59720 * 3 2 1 5 5 C 1.53099 * 109.25594 * 177.60958 * 4 3 2 6 6 O 1.43015 * 109.26002 * 56.84683 * 5 4 3 7 7 C 1.43011 * 113.74133 * 301.33396 * 6 5 4 8 8 C 1.47019 * 110.99985 * 166.96631 * 3 2 1 9 9 H 1.09005 * 109.50464 * 62.41133 * 8 3 2 10 10 C 1.50696 * 109.50396 * 302.32898 * 8 3 2 11 11 O 1.21286 * 120.00042 * 327.42149 * 10 8 3 12 12 N 1.34778 * 120.00169 * 147.42654 * 10 8 3 13 13 C 1.37133 * 119.99621 * 4.02744 * 12 10 8 14 14 H 1.07997 * 120.00266 * 310.48175 * 13 12 10 15 15 C 1.38886 * 119.99470 * 130.47891 * 13 12 10 16 16 N 1.31430 * 119.99629 * 169.63487 * 15 13 12 17 17 Si 1.86796 * 120.00498 * 349.63915 * 15 13 12 18 18 H 1.48502 * 109.47254 * 94.40770 * 17 15 13 19 19 H 1.48505 * 109.47144 * 334.41073 * 17 15 13 20 20 H 1.48495 * 109.47374 * 214.40725 * 17 15 13 21 21 C 1.39805 * 119.99989 * 184.02634 * 12 10 8 22 22 C 1.38955 * 120.06946 * 351.75819 * 21 12 10 23 23 C 1.38066 * 119.93800 * 179.74075 * 22 21 12 24 24 C 1.38416 * 120.06408 * 0.50760 * 23 22 21 25 25 Cl 1.73604 * 119.93733 * 179.74443 * 24 23 22 26 26 C 1.38418 * 120.13053 * 359.76670 * 24 23 22 27 27 C 1.38073 * 120.06403 * 359.97438 * 26 24 23 28 28 H 1.08999 * 109.46444 * 300.00005 * 1 2 3 29 29 H 1.08995 * 109.46982 * 59.99834 * 1 2 3 30 30 H 1.08996 * 109.46787 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46716 * 240.00346 * 2 1 3 32 32 H 1.08995 * 109.46982 * 120.00166 * 2 1 3 33 33 H 1.09000 * 109.51183 * 297.54394 * 4 3 2 34 34 H 1.08999 * 109.50553 * 57.63323 * 4 3 2 35 35 H 1.09004 * 109.50790 * 176.78974 * 5 4 3 36 36 H 1.09006 * 109.50410 * 296.91277 * 5 4 3 37 37 H 1.08999 * 109.50431 * 298.73375 * 7 6 5 38 38 H 1.09000 * 109.50487 * 178.60009 * 7 6 5 39 39 H 0.97006 * 119.99833 * 179.97438 * 16 15 13 40 40 H 1.08008 * 120.03137 * 359.97294 * 22 21 12 41 41 H 1.08001 * 119.96903 * 180.25269 * 23 22 21 42 42 H 1.08001 * 119.97010 * 179.97438 * 26 24 23 43 43 H 1.07996 * 120.03308 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7401 2.0426 -1.2848 5 6 2.2119 3.4977 -1.2204 6 8 3.6025 3.5284 -0.8877 7 6 3.9106 2.8971 0.3579 8 6 3.4560 1.4360 0.3095 9 1 4.0138 0.9059 -0.4626 10 6 3.7060 0.7866 1.6462 11 8 2.8684 0.8566 2.5206 12 7 4.8605 0.1281 1.8702 13 6 5.8415 0.1190 0.9121 14 1 5.5968 -0.1337 -0.1090 15 6 7.1499 0.4346 1.2550 16 7 8.1221 0.2310 0.3943 17 14 7.5278 1.1484 2.9393 18 1 7.9108 0.0534 3.8664 19 1 6.3247 1.8431 3.4639 20 1 8.6485 2.1162 2.8267 21 6 5.0577 -0.5455 3.0793 22 6 4.1440 -0.3979 4.1157 23 6 4.3387 -1.0686 5.3067 24 6 5.4482 -1.8793 5.4726 25 17 5.6932 -2.7159 6.9739 26 6 6.3632 -2.0239 4.4441 27 6 6.1710 -1.3598 3.2489 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.2705 1.5230 -2.0828 34 1 0.6685 2.0152 -1.4821 35 1 2.0587 3.9732 -2.1892 36 1 1.6435 4.0312 -0.4585 37 1 3.3916 3.4131 1.1656 38 1 4.9860 2.9381 0.5305 39 1 9.0358 0.4519 0.6336 40 1 3.2803 0.2381 3.9884 41 1 3.6266 -0.9574 6.1111 42 1 7.2283 -2.6568 4.5765 43 1 6.8850 -1.4733 2.4466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602352767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:08 Heat of formation + Delta-G solvation = -35.483343 kcal Electronic energy + Delta-G solvation = -28592.273346 eV Core-core repulsion = 24664.126868 eV Total energy + Delta-G solvation = -3928.146478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24872 -40.61173 -39.19530 -37.63971 -37.02320 -36.74619 -34.23262 -32.96434 -32.00629 -31.81719 -30.47038 -27.67930 -27.31507 -25.90490 -23.94842 -23.39265 -23.03369 -21.83046 -21.07661 -19.85967 -18.51121 -17.90836 -17.79781 -17.37931 -17.20757 -16.37236 -16.20043 -16.02571 -15.93382 -15.69388 -15.25263 -15.18806 -14.97246 -14.78166 -14.59865 -14.23878 -14.14433 -13.86068 -13.53686 -13.26598 -13.17095 -12.92858 -12.86602 -12.70102 -12.43857 -12.39399 -12.25672 -12.08263 -11.90553 -11.75487 -11.53817 -11.28237 -10.83644 -10.76787 -10.17240 -9.87304 -9.43011 -8.93289 -8.60303 -6.50905 0.08874 0.32796 1.17925 1.20238 1.29060 1.34862 1.58141 2.06869 2.12295 2.59819 2.68141 2.90183 2.98285 3.65509 3.80128 3.93480 3.95706 3.96978 4.02240 4.07722 4.26602 4.36277 4.37496 4.44826 4.45999 4.52540 4.60857 4.64810 4.69839 4.78861 4.93095 4.96910 5.00478 5.05694 5.09795 5.29284 5.33800 5.35405 5.43300 5.74935 5.78208 5.91535 5.97560 6.08345 6.19940 6.75906 7.10729 7.39952 8.44953 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.004620 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.594303 B = 6058.809297 C = 7456.224964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.048 3.952 3 N -0.524 5.524 4 C 0.018 3.982 5 C 0.055 3.945 6 O -0.391 6.391 7 C 0.092 3.908 8 C 0.056 3.944 9 H 0.063 0.937 10 C 0.505 3.495 11 O -0.543 6.543 12 N -0.414 5.414 13 C -0.365 4.365 14 H 0.089 0.911 15 C 0.066 3.934 16 N -0.880 5.880 17 Si 0.899 3.101 18 H -0.236 1.236 19 H -0.276 1.276 20 H -0.283 1.283 21 C 0.136 3.864 22 C -0.184 4.184 23 C -0.087 4.087 24 C -0.076 4.076 25 Cl -0.069 7.069 26 C -0.092 4.092 27 C -0.156 4.156 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.286 0.714 40 H 0.180 0.820 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 0.653 1.380 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.080 4.080 3 N -0.251 5.251 4 C -0.110 4.110 5 C -0.022 4.022 6 O -0.310 6.310 7 C 0.014 3.986 8 C -0.055 4.055 9 H 0.081 0.919 10 C 0.296 3.704 11 O -0.424 6.424 12 N -0.124 5.124 13 C -0.491 4.491 14 H 0.107 0.893 15 C -0.143 4.143 16 N -0.514 5.514 17 Si 0.724 3.276 18 H -0.160 1.160 19 H -0.201 1.201 20 H -0.209 1.209 21 C 0.039 3.961 22 C -0.204 4.204 23 C -0.106 4.106 24 C -0.104 4.104 25 Cl -0.041 7.041 26 C -0.111 4.111 27 C -0.177 4.177 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.196 0.804 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.963 1.006 2.024 10.216 hybrid contribution 1.248 -0.590 0.101 1.384 sum -8.715 0.416 2.125 8.980 Atomic orbital electron populations 1.21651 0.92000 1.02398 1.02740 1.22144 0.98352 0.87862 0.99650 1.62122 1.12306 1.18069 1.32567 1.22994 1.03560 0.95662 0.88749 1.22999 0.80963 0.95201 1.02997 1.88002 1.26851 1.77625 1.38509 1.22252 1.00870 0.88660 0.86822 1.21932 0.90627 0.98588 0.94400 0.91894 1.20813 0.81496 0.78188 0.89897 1.90202 1.46746 1.60480 1.45003 1.41529 1.15519 1.41786 1.13563 1.18769 0.87669 1.51766 0.90912 0.89319 1.25698 0.95255 0.93687 0.99633 1.69708 1.01231 1.43521 1.36914 0.86589 0.78546 0.80301 0.82191 1.15990 1.20126 1.20929 1.18773 0.95769 0.93617 0.87898 1.22761 1.02474 1.03327 0.91822 1.21204 0.96416 0.95249 0.97776 1.20884 0.98740 1.01898 0.88863 1.98313 1.96761 1.77197 1.31795 1.20963 0.99266 0.99559 0.91287 1.21015 0.98874 0.99019 0.98826 0.92506 0.90897 0.91161 0.94992 0.93327 0.94310 0.86332 0.85278 0.91583 0.92079 0.89111 0.90380 0.80375 0.82888 0.83486 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.91 71.98 0.71 -2.27 16 2 C 0.05 1.46 5.39 86.31 0.47 1.93 16 3 N -0.52 -16.84 4.27 -874.37 -3.73 -20.57 16 4 C 0.02 0.44 5.46 86.31 0.47 0.91 16 5 C 0.05 1.31 7.01 72.02 0.50 1.82 16 6 O -0.39 -12.93 10.83 -148.98 -1.61 -14.55 16 7 C 0.09 3.38 6.27 72.01 0.45 3.84 16 8 C 0.06 2.16 1.80 44.18 0.08 2.24 16 9 H 0.06 2.67 6.38 -2.38 -0.02 2.65 16 10 C 0.50 21.96 5.35 87.66 0.47 22.43 16 11 O -0.54 -24.13 12.29 -3.05 -0.04 -24.17 16 12 N -0.41 -19.21 2.28 -458.89 -1.05 -20.26 16 13 C -0.36 -18.11 8.13 84.02 0.68 -17.42 16 14 H 0.09 4.73 6.96 -2.91 -0.02 4.71 16 15 C 0.07 3.28 4.13 84.91 0.35 3.63 16 16 N -0.88 -45.93 13.96 21.65 0.30 -45.63 16 17 Si 0.90 40.94 24.21 68.60 1.66 42.60 16 18 H -0.24 -10.17 5.80 99.48 0.58 -9.59 16 19 H -0.28 -13.27 7.05 99.48 0.70 -12.57 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 C 0.14 6.06 4.53 38.22 0.17 6.23 16 22 C -0.18 -7.50 9.03 22.40 0.20 -7.29 16 23 C -0.09 -3.02 9.82 22.27 0.22 -2.80 16 24 C -0.08 -2.57 6.32 22.36 0.14 -2.43 16 25 Cl -0.07 -1.93 28.95 -2.72 -0.08 -2.01 16 26 C -0.09 -3.32 9.44 22.27 0.21 -3.11 16 27 C -0.16 -6.63 5.74 22.41 0.13 -6.50 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.34 6.62 -2.39 -0.02 1.32 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 0.96 8.09 -2.38 -0.02 0.94 16 32 H 0.05 1.79 6.13 -2.39 -0.01 1.78 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.12 2.19 6.51 -2.39 -0.02 2.18 16 35 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.29 13.97 8.31 -92.70 -0.77 13.20 16 40 H 0.18 7.60 4.57 -59.23 -0.27 7.33 16 41 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 43 H 0.13 6.06 5.56 -2.91 -0.02 6.04 16 Total: -1.00 -56.61 347.32 1.37 -55.24 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.64 Total: 28.15 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.26 Total: 1.19 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -4.47 Total: -86.46 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.65 Total: -38.71 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.66 Total: 42.60 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -56.61 1.37 -55.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602352767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.760 kcal (2) G-P(sol) polarization free energy of solvation -56.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds