Wall clock time and date at job start Tue Mar 31 2020 20:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39800 * 125.34318 * 2 1 4 4 C 1.30198 * 110.13613 * 180.02562 * 3 2 1 5 5 C 1.45980 * 107.58401 * 0.02562 * 4 3 2 6 6 C 1.39651 * 134.11254 * 180.33251 * 5 4 3 7 7 C 1.39520 * 117.94431 * 180.16728 * 6 5 4 8 8 C 1.47663 * 120.40942 * 179.73839 * 7 6 5 9 9 O 1.21573 * 120.00083 * 359.72392 * 8 7 6 10 10 N 1.34781 * 119.99758 * 179.72240 * 8 7 6 11 11 C 1.39849 * 120.00186 * 174.77880 * 10 8 7 12 12 C 1.38992 * 120.03315 * 326.29527 * 11 10 8 13 13 C 1.38152 * 120.06338 * 180.02562 * 12 11 10 14 14 C 1.38178 * 120.13810 * 359.67894 * 13 12 11 15 15 C 1.38909 * 120.07418 * 0.59738 * 14 13 12 16 16 O 1.35756 * 120.02932 * 179.70056 * 15 14 13 17 17 C 1.34833 * 116.99531 * 173.82429 * 16 15 14 18 18 H 1.07999 * 120.00381 * 354.59512 * 17 16 15 19 19 C 1.38653 * 119.99441 * 174.59431 * 17 16 15 20 20 N 1.31554 * 120.00587 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99610 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47223 * 60.00303 * 21 19 17 23 23 H 1.48504 * 109.47042 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47224 * 300.00297 * 21 19 17 25 25 C 1.38721 * 120.04224 * 146.31654 * 11 10 8 26 26 C 1.40197 * 119.17826 * 359.46355 * 7 6 5 27 27 N 1.31179 * 121.37197 * 0.27933 * 26 7 6 28 28 C 1.32929 * 121.85020 * 359.97438 * 27 26 7 29 29 H 1.08996 * 109.47337 * 269.97870 * 1 2 3 30 30 H 1.09001 * 109.47052 * 29.97396 * 1 2 3 31 31 H 1.08998 * 109.47287 * 149.97084 * 1 2 3 32 32 H 1.07994 * 126.20950 * 180.02562 * 4 3 2 33 33 H 1.08001 * 121.03352 * 359.92238 * 6 5 4 34 34 H 0.97003 * 120.00288 * 354.77451 * 10 8 7 35 35 H 1.07998 * 119.96531 * 0.02562 * 12 11 10 36 36 H 1.08001 * 119.92728 * 180.02562 * 13 12 11 37 37 H 1.08001 * 119.96082 * 180.32149 * 14 13 12 38 38 H 0.97000 * 120.00462 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.07244 * 0.02562 * 25 11 10 40 40 H 1.08001 * 119.31113 * 180.29646 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5301 0.7988 -0.0005 5 6 3.5906 -0.6597 -0.0016 6 6 4.6327 -1.5894 0.0034 7 6 4.3001 -2.9443 -0.0034 8 6 5.3588 -3.9738 -0.0044 9 8 6.5286 -3.6428 -0.0045 10 7 5.0281 -5.2804 -0.0053 11 6 6.0257 -6.2541 -0.1165 12 6 7.1587 -6.0050 -0.8820 13 6 8.1444 -6.9666 -0.9928 14 6 8.0104 -8.1760 -0.3380 15 6 6.8778 -8.4334 0.4239 16 8 6.7443 -9.6242 1.0619 17 6 5.6859 -9.7619 1.8858 18 1 5.0407 -8.9183 2.0817 19 6 5.4259 -10.9866 2.4816 20 7 6.2121 -12.0141 2.2434 21 14 3.9600 -11.1772 3.6237 22 1 2.7113 -10.8666 2.8825 23 1 3.9031 -12.5731 4.1273 24 1 4.1007 -10.2433 4.7697 25 6 5.8854 -7.4699 0.5366 26 6 2.9484 -3.3164 -0.0032 27 7 1.9928 -2.4177 -0.0023 28 6 2.2553 -1.1146 -0.0011 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 4.3743 1.4723 -0.0003 33 1 5.6642 -1.2694 0.0081 34 1 4.0981 -5.5454 0.0713 35 1 7.2687 -5.0587 -1.3907 36 1 9.0241 -6.7705 -1.5878 37 1 8.7851 -8.9238 -0.4224 38 1 6.0305 -12.8708 2.6605 39 1 5.0057 -7.6663 1.1314 40 1 2.6886 -4.3647 -0.0035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747296760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:39 Heat of formation + Delta-G solvation = 81.867690 kcal Electronic energy + Delta-G solvation = -26957.228016 eV Core-core repulsion = 22933.062767 eV Total energy + Delta-G solvation = -4024.165249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03131 -40.34634 -38.86705 -38.06634 -36.44731 -34.41664 -34.23729 -32.29353 -32.09042 -30.93216 -29.31148 -28.54513 -27.26696 -25.36594 -24.51274 -24.20579 -22.02036 -21.82736 -21.37153 -20.29789 -18.49534 -18.14579 -17.98651 -17.45016 -16.59770 -16.30444 -15.94154 -15.42186 -15.24725 -14.95141 -14.67599 -14.37124 -14.23049 -14.02121 -13.77500 -13.72220 -13.54558 -13.44188 -13.00883 -12.95459 -12.70928 -12.36902 -11.78009 -11.62971 -11.56799 -11.19232 -11.05970 -10.89054 -10.77455 -10.47078 -10.29208 -9.88080 -9.61739 -9.51638 -9.48132 -8.82174 -8.75771 -7.77049 -7.18622 -6.46283 -4.06212 0.32390 0.41785 1.66028 1.97162 1.98990 2.35603 2.78799 3.06036 3.11304 3.12949 3.15320 3.52253 3.63651 3.81255 3.94752 4.12403 4.37739 4.43673 4.56200 4.65508 4.80014 4.85610 4.94837 5.05753 5.08911 5.13386 5.25608 5.56744 5.70556 5.73189 5.94949 5.96103 6.02820 6.19561 6.25061 6.27780 6.60002 6.91763 6.92753 6.94308 7.09233 7.28081 7.38655 7.39594 7.60680 7.76621 7.97445 8.18389 8.98939 9.68868 10.71558 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.002464 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.595603 B =11360.244701 C =13047.226085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.393 5.393 3 N -0.241 5.241 4 C 0.098 3.902 5 C -0.239 4.239 6 C 0.075 3.925 7 C -0.230 4.230 8 C 0.568 3.432 9 O -0.516 6.516 10 N -0.663 5.663 11 C 0.180 3.820 12 C -0.204 4.204 13 C -0.063 4.063 14 C -0.198 4.198 15 C 0.168 3.832 16 O -0.175 6.175 17 C -0.393 4.393 18 H 0.090 0.910 19 C 0.040 3.960 20 N -0.862 5.862 21 Si 0.939 3.061 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.254 4.254 26 C 0.206 3.794 27 N -0.504 5.504 28 C 0.329 3.671 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.207 0.793 33 H 0.157 0.843 34 H 0.405 0.595 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.131 0.869 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 22.233 -5.207 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.182 5.182 3 N -0.052 5.052 4 C -0.101 4.101 5 C -0.249 4.249 6 C 0.047 3.953 7 C -0.237 4.237 8 C 0.356 3.644 9 O -0.392 6.392 10 N -0.308 5.308 11 C 0.087 3.913 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.218 4.218 15 C 0.113 3.887 16 O -0.078 6.078 17 C -0.469 4.469 18 H 0.107 0.893 19 C -0.164 4.164 20 N -0.496 5.496 21 Si 0.764 3.236 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.276 4.276 26 C 0.036 3.964 27 N -0.218 5.218 28 C 0.090 3.910 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.223 0.777 33 H 0.175 0.825 34 H 0.241 0.759 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.368 22.869 -5.138 25.629 hybrid contribution -0.090 -0.647 0.705 0.961 sum -10.458 22.222 -4.434 24.957 Atomic orbital electron populations 1.21872 0.73066 1.04647 1.03526 1.48153 1.06513 1.00007 1.63571 1.76755 1.02743 1.07320 1.18430 1.25167 0.94912 0.92501 0.97512 1.20466 0.93977 0.94865 1.15596 1.21184 0.99471 0.89860 0.84804 1.20632 0.94768 0.94504 1.13842 1.17812 0.88153 0.81914 0.76565 1.90809 1.18885 1.81153 1.48306 1.43331 1.10164 1.04930 1.72352 1.17349 0.89697 0.87932 0.96315 1.20539 0.96004 1.00808 1.05137 1.20533 0.97622 0.92351 0.97696 1.20267 0.98408 0.98761 1.04376 1.19082 0.92468 0.86380 0.90745 1.84024 1.44938 1.27455 1.51418 1.21220 1.05621 0.97532 1.22524 0.89277 1.25270 0.98754 0.94258 0.98137 1.70021 1.36588 1.01386 1.41651 0.85810 0.80077 0.78012 0.79697 1.19515 1.20278 1.19529 1.20815 1.03305 0.95051 1.08428 1.22909 0.86824 0.98440 0.88259 1.66676 1.37278 0.98499 1.19321 1.19147 0.88720 0.88177 0.94952 0.90854 0.89247 0.88954 0.77670 0.82527 0.75893 0.86282 0.86553 0.86346 0.91943 0.85166 0.81263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 11.43 59.85 0.68 1.38 16 2 N -0.39 -3.88 4.03 -67.18 -0.27 -4.15 16 3 N -0.24 -2.32 12.39 31.87 0.39 -1.93 16 4 C 0.10 0.78 12.30 -15.15 -0.19 0.59 16 5 C -0.24 -2.39 6.36 -105.20 -0.67 -3.06 16 6 C 0.08 0.76 9.76 -38.58 -0.38 0.39 16 7 C -0.23 -2.57 5.89 -104.84 -0.62 -3.19 16 8 C 0.57 8.03 7.51 -12.41 -0.09 7.93 16 9 O -0.52 -8.89 14.11 5.30 0.07 -8.81 16 10 N -0.66 -9.45 5.28 -10.78 -0.06 -9.51 16 11 C 0.18 3.30 6.27 -83.74 -0.52 2.77 16 12 C -0.20 -3.77 8.65 -39.33 -0.34 -4.11 16 13 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 14 C -0.20 -4.15 9.99 -39.36 -0.39 -4.55 16 15 C 0.17 3.96 6.64 -39.14 -0.26 3.70 16 16 O -0.18 -4.88 9.76 0.02 0.00 -4.88 16 17 C -0.39 -10.68 9.44 30.89 0.29 -10.39 16 18 H 0.09 2.22 5.30 -52.49 -0.28 1.94 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 21 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.25 -5.32 9.04 -39.21 -0.35 -5.67 16 26 C 0.21 2.06 10.69 -17.09 -0.18 1.88 16 27 N -0.50 -5.59 10.37 -12.02 -0.12 -5.72 16 28 C 0.33 3.65 7.96 -156.09 -1.24 2.41 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.16 1.38 7.72 -52.49 -0.41 0.97 16 34 H 0.40 4.40 6.87 -40.82 -0.28 4.12 16 35 H 0.12 2.12 6.43 -52.49 -0.34 1.79 16 36 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.13 2.65 5.71 -52.49 -0.30 2.35 16 40 H 0.17 1.22 6.40 -52.49 -0.34 0.89 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -35.11 353.27 -7.29 -42.40 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.61 Total: 6.85 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -4.76 Total: -10.47 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.70 Total: -45.41 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.07 Total: -13.70 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.11 -7.29 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747296760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.266 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds