Wall clock time and date at job start Tue Mar 31 2020 21:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99996 * 2 1 4 4 N 1.36604 * 110.99722 * 123.95183 * 2 1 3 5 5 C 1.34772 * 119.99930 * 116.04493 * 4 2 1 6 6 O 1.21587 * 120.00076 * 179.97438 * 5 4 2 7 7 N 1.34779 * 120.00211 * 0.02562 * 5 4 2 8 8 C 1.39943 * 120.00237 * 174.62404 * 7 5 4 9 9 C 1.38933 * 120.03603 * 146.99374 * 8 7 5 10 10 C 1.38142 * 120.06920 * 179.97438 * 9 8 7 11 11 C 1.38175 * 120.14157 * 0.03198 * 10 9 8 12 12 C 1.38907 * 120.06777 * 359.94624 * 11 10 9 13 13 N 1.39924 * 120.03388 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99943 * 326.58201 * 13 12 11 15 15 O 1.21281 * 120.00322 * 354.89589 * 14 13 12 16 16 C 1.50702 * 119.99880 * 174.89516 * 14 13 12 17 17 S 1.80997 * 109.47329 * 180.02562 * 16 14 13 18 18 C 1.76194 * 100.00230 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00075 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00204 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99778 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00299 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47154 * 89.99973 * 22 20 18 24 24 H 1.48502 * 109.47356 * 210.00043 * 22 20 18 25 25 H 1.48503 * 109.46813 * 330.00093 * 22 20 18 26 26 C 1.38727 * 120.03056 * 326.72438 * 8 7 5 27 27 H 1.08999 * 109.47380 * 296.05085 * 1 2 3 28 28 H 1.09008 * 109.46567 * 56.04904 * 1 2 3 29 29 H 1.08997 * 109.47086 * 176.04278 * 1 2 3 30 30 H 1.09002 * 109.46800 * 183.94668 * 3 2 1 31 31 H 1.08994 * 109.47056 * 303.94980 * 3 2 1 32 32 H 1.08997 * 109.47294 * 63.95558 * 3 2 1 33 33 H 0.97005 * 119.99675 * 296.04383 * 4 2 1 34 34 H 0.96993 * 119.99520 * 354.89524 * 7 5 4 35 35 H 1.07994 * 119.96573 * 359.97438 * 9 8 7 36 36 H 1.08003 * 119.92804 * 180.02562 * 10 9 8 37 37 H 1.07998 * 119.96553 * 179.97438 * 11 10 9 38 38 H 0.97001 * 120.00043 * 146.58297 * 13 12 11 39 39 H 1.09000 * 109.47505 * 300.00690 * 16 14 13 40 40 H 1.09003 * 109.46782 * 60.00150 * 16 14 13 41 41 H 0.97011 * 119.99821 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.06805 * 359.96848 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 7 1.9585 -0.7123 1.0579 5 6 2.6784 -1.8309 0.8418 6 8 3.1145 -2.4646 1.7833 7 7 2.9158 -2.2466 -0.4181 8 6 3.7559 -3.3423 -0.6469 9 6 3.5134 -4.1927 -1.7184 10 6 4.3424 -5.2741 -1.9452 11 6 5.4147 -5.5141 -1.1074 12 6 5.6628 -4.6673 -0.0346 13 7 6.7491 -4.9106 0.8131 14 6 7.1346 -6.1767 1.0680 15 8 6.4852 -7.1065 0.6384 16 6 8.3727 -6.4370 1.8867 17 16 8.6231 -8.2220 2.0513 18 6 10.0922 -8.2366 3.0239 19 1 10.5484 -7.3057 3.3271 20 6 10.6632 -9.4442 3.4005 21 7 10.1075 -10.5787 3.0306 22 14 12.2204 -9.4597 4.4323 23 1 11.8596 -9.4656 5.8728 24 1 13.0122 -10.6754 4.1154 25 1 13.0272 -8.2505 4.1289 26 6 4.8349 -3.5771 0.1928 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5740 -0.8526 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0707 31 1 1.5899 1.9163 -0.8524 32 1 1.7044 1.8724 0.9233 33 1 1.7879 -0.4128 1.9647 34 1 2.5076 -1.7839 -1.1665 35 1 2.6758 -4.0081 -2.3747 36 1 4.1520 -5.9336 -2.7791 37 1 6.0608 -6.3606 -1.2870 38 1 7.2247 -4.1681 1.2173 39 1 9.2362 -5.9935 1.3909 40 1 8.2543 -5.9937 2.8755 41 1 10.5064 -11.4228 3.2941 42 1 5.0283 -2.9146 1.0235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791272345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:56 Heat of formation + Delta-G solvation = 10.529960 kcal Electronic energy + Delta-G solvation = -25557.054701 eV Core-core repulsion = 21665.239967 eV Total energy + Delta-G solvation = -3891.814734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03532 -40.02501 -38.61773 -37.63321 -35.17188 -33.95689 -32.41561 -32.22445 -30.47848 -29.39746 -28.33370 -28.11605 -25.47404 -24.42720 -23.28508 -22.61995 -21.23198 -19.94292 -18.93583 -18.18423 -17.90595 -17.31375 -16.52118 -16.31580 -16.05534 -15.53635 -15.20755 -15.05440 -14.85022 -14.78889 -14.60497 -14.07022 -13.91398 -13.49575 -13.27171 -13.16864 -13.09597 -12.81507 -12.56437 -12.44726 -12.14251 -11.84210 -11.63218 -11.05041 -11.00870 -10.82122 -10.75548 -10.35936 -9.96607 -9.81915 -9.80974 -9.67461 -9.37172 -9.05199 -8.29679 -8.23933 -7.83974 -6.49222 -6.20373 -3.91134 1.34425 1.43909 2.13194 2.80288 2.91610 3.03864 3.08294 3.24152 3.29492 3.33566 3.68958 3.96151 4.07043 4.21260 4.55643 4.75542 4.75649 4.84480 4.94376 5.08287 5.14911 5.16135 5.18807 5.20142 5.42026 5.51856 5.55613 5.64804 5.75542 5.86893 5.90360 6.12919 6.17860 6.31998 6.41349 6.51681 6.55203 6.70717 6.77401 7.18535 7.60725 7.62664 7.71429 8.27325 8.36594 8.50420 9.24981 10.87028 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.001948 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.970520 B =14367.814116 C =15112.770358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.316 5.316 3 C 0.003 3.997 4 N -0.590 5.590 5 C 0.728 3.272 6 O -0.567 6.567 7 N -0.668 5.668 8 C 0.178 3.822 9 C -0.168 4.168 10 C -0.079 4.079 11 C -0.138 4.138 12 C 0.179 3.821 13 N -0.679 5.679 14 C 0.532 3.468 15 O -0.495 6.495 16 C -0.154 4.154 17 S -0.056 6.056 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.155 4.155 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.399 0.601 34 H 0.416 0.584 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.409 0.591 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.268 0.732 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.481 26.450 -10.512 33.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 N -0.136 5.136 3 C -0.145 4.145 4 N -0.343 5.343 5 C 0.428 3.572 6 O -0.440 6.440 7 N -0.316 5.316 8 C 0.083 3.917 9 C -0.190 4.190 10 C -0.098 4.098 11 C -0.159 4.159 12 C 0.083 3.917 13 N -0.325 5.325 14 C 0.320 3.680 15 O -0.367 6.367 16 C -0.304 4.304 17 S 0.170 5.830 18 C -0.684 4.684 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.178 4.178 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.241 0.759 34 H 0.253 0.747 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.245 0.755 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.970 23.922 -11.035 32.464 hybrid contribution 1.178 2.444 2.145 3.459 sum -17.792 26.367 -8.890 33.027 Atomic orbital electron populations 1.22981 0.86074 1.03775 1.01934 1.62784 1.08423 1.13970 1.28455 1.22938 1.02109 0.87521 1.01920 1.44916 1.58107 1.25905 1.05367 1.15570 0.78283 0.79696 0.83610 1.91067 1.55573 1.55492 1.41892 1.42415 1.49680 1.31873 1.07627 1.17132 0.89944 0.88253 0.96401 1.20726 1.02042 0.96097 1.00126 1.20782 0.94023 0.96165 0.98858 1.21233 1.00048 1.01072 0.93577 1.17569 0.88712 0.95297 0.90113 1.43675 1.31560 1.09214 1.48100 1.20497 0.85965 0.81629 0.79946 1.90715 1.53717 1.42455 1.49803 1.23549 0.96681 1.08537 1.01681 1.85403 1.34701 0.93376 1.69512 1.22866 1.11731 0.95436 1.38382 0.90848 1.24993 0.97983 0.94595 0.96014 1.70021 1.39344 0.97460 1.43423 0.86158 0.81499 0.77810 0.79969 1.20272 1.20748 1.19688 1.20766 0.93993 1.00988 1.02048 0.94216 0.89467 0.90334 0.90280 0.89444 0.94214 0.75934 0.74654 0.85927 0.85336 0.84379 0.75544 0.88751 0.88862 0.92169 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.99 60.07 0.60 0.60 16 2 N -0.32 -1.48 4.20 -128.55 -0.54 -2.02 16 3 C 0.00 0.01 9.99 60.07 0.60 0.61 16 4 N -0.59 -4.26 4.78 27.63 0.13 -4.12 16 5 C 0.73 8.05 8.40 -86.92 -0.73 7.32 16 6 O -0.57 -8.78 14.86 5.29 0.08 -8.71 16 7 N -0.67 -6.48 5.30 -14.24 -0.08 -6.56 16 8 C 0.18 2.17 6.28 -83.72 -0.53 1.64 16 9 C -0.17 -1.85 9.96 -39.36 -0.39 -2.24 16 10 C -0.08 -0.97 10.03 -39.64 -0.40 -1.37 16 11 C -0.14 -2.13 8.65 -39.36 -0.34 -2.47 16 12 C 0.18 2.76 6.27 -83.72 -0.53 2.24 16 13 N -0.68 -10.50 5.34 -9.88 -0.05 -10.55 16 14 C 0.53 10.38 7.59 -10.98 -0.08 10.30 16 15 O -0.49 -11.38 13.55 5.56 0.08 -11.31 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 18 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.15 -2.19 8.57 -39.21 -0.34 -2.53 16 27 H 0.04 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.09 0.12 8.12 -51.92 -0.42 -0.30 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.13 8.12 -51.93 -0.42 -0.30 16 32 H 0.04 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.40 2.54 8.93 -185.15 -1.65 0.89 16 34 H 0.42 2.96 7.87 -40.82 -0.32 2.64 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.14 2.38 6.41 -52.49 -0.34 2.04 16 38 H 0.41 4.96 8.82 -40.82 -0.36 4.60 16 39 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.14 1.98 6.41 -52.49 -0.34 1.64 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -37.19 375.32 -9.71 -46.90 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.78 Total: 5.36 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.71 Total: -1.89 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.20 Total: -48.83 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.15 Total: -20.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.19 -9.71 -46.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791272345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.432 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds