Wall clock time and date at job start Tue Mar 31 2020 21:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99996 * 2 1 4 4 N 1.36604 * 110.99722 * 123.95183 * 2 1 3 5 5 C 1.34772 * 119.99930 * 116.04493 * 4 2 1 6 6 O 1.21587 * 120.00076 * 179.97438 * 5 4 2 7 7 N 1.34779 * 120.00211 * 0.02562 * 5 4 2 8 8 C 1.39943 * 120.00237 * 174.62404 * 7 5 4 9 9 C 1.38933 * 120.03603 * 146.99374 * 8 7 5 10 10 C 1.38142 * 120.06920 * 179.97438 * 9 8 7 11 11 C 1.38175 * 120.14157 * 0.03198 * 10 9 8 12 12 C 1.38907 * 120.06777 * 359.94624 * 11 10 9 13 13 N 1.39924 * 120.03388 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99943 * 326.58201 * 13 12 11 15 15 O 1.21281 * 120.00322 * 354.89589 * 14 13 12 16 16 C 1.50702 * 119.99880 * 174.89516 * 14 13 12 17 17 S 1.80997 * 109.47329 * 180.02562 * 16 14 13 18 18 C 1.76194 * 100.00230 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00075 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00204 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99778 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00299 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47154 * 89.99973 * 22 20 18 24 24 H 1.48502 * 109.47356 * 210.00043 * 22 20 18 25 25 H 1.48503 * 109.46813 * 330.00093 * 22 20 18 26 26 C 1.38727 * 120.03056 * 326.72438 * 8 7 5 27 27 H 1.08999 * 109.47380 * 296.05085 * 1 2 3 28 28 H 1.09008 * 109.46567 * 56.04904 * 1 2 3 29 29 H 1.08997 * 109.47086 * 176.04278 * 1 2 3 30 30 H 1.09002 * 109.46800 * 183.94668 * 3 2 1 31 31 H 1.08994 * 109.47056 * 303.94980 * 3 2 1 32 32 H 1.08997 * 109.47294 * 63.95558 * 3 2 1 33 33 H 0.97005 * 119.99675 * 296.04383 * 4 2 1 34 34 H 0.96993 * 119.99520 * 354.89524 * 7 5 4 35 35 H 1.07994 * 119.96573 * 359.97438 * 9 8 7 36 36 H 1.08003 * 119.92804 * 180.02562 * 10 9 8 37 37 H 1.07998 * 119.96553 * 179.97438 * 11 10 9 38 38 H 0.97001 * 120.00043 * 146.58297 * 13 12 11 39 39 H 1.09000 * 109.47505 * 300.00690 * 16 14 13 40 40 H 1.09003 * 109.46782 * 60.00150 * 16 14 13 41 41 H 0.97011 * 119.99821 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.06805 * 359.96848 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 7 1.9585 -0.7123 1.0579 5 6 2.6784 -1.8309 0.8418 6 8 3.1145 -2.4646 1.7833 7 7 2.9158 -2.2466 -0.4181 8 6 3.7559 -3.3423 -0.6469 9 6 3.5134 -4.1927 -1.7184 10 6 4.3424 -5.2741 -1.9452 11 6 5.4147 -5.5141 -1.1074 12 6 5.6628 -4.6673 -0.0346 13 7 6.7491 -4.9106 0.8131 14 6 7.1346 -6.1767 1.0680 15 8 6.4852 -7.1065 0.6384 16 6 8.3727 -6.4370 1.8867 17 16 8.6231 -8.2220 2.0513 18 6 10.0922 -8.2366 3.0239 19 1 10.5484 -7.3057 3.3271 20 6 10.6632 -9.4442 3.4005 21 7 10.1075 -10.5787 3.0306 22 14 12.2204 -9.4597 4.4323 23 1 11.8596 -9.4656 5.8728 24 1 13.0122 -10.6754 4.1154 25 1 13.0272 -8.2505 4.1289 26 6 4.8349 -3.5771 0.1928 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5740 -0.8526 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0707 31 1 1.5899 1.9163 -0.8524 32 1 1.7044 1.8724 0.9233 33 1 1.7879 -0.4128 1.9647 34 1 2.5076 -1.7839 -1.1665 35 1 2.6758 -4.0081 -2.3747 36 1 4.1520 -5.9336 -2.7791 37 1 6.0608 -6.3606 -1.2870 38 1 7.2247 -4.1681 1.2173 39 1 9.2362 -5.9935 1.3909 40 1 8.2543 -5.9937 2.8755 41 1 10.5064 -11.4228 3.2941 42 1 5.0283 -2.9146 1.0235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791272345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:56 Heat of formation + Delta-G solvation = -17.028813 kcal Electronic energy + Delta-G solvation = -25558.249739 eV Core-core repulsion = 21665.239967 eV Total energy + Delta-G solvation = -3893.009772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94397 -41.24181 -39.56381 -38.46638 -36.34552 -35.09688 -34.59021 -32.82058 -31.85665 -30.46920 -29.39772 -28.56823 -27.66425 -24.95364 -24.15274 -23.79779 -22.24697 -21.15025 -19.99699 -19.67432 -18.85335 -18.32341 -17.92149 -17.23382 -16.92017 -16.88451 -16.68287 -16.45595 -16.01872 -15.82087 -15.59864 -15.07257 -15.00787 -14.88294 -14.54738 -14.40701 -13.94411 -13.61722 -13.46177 -13.28036 -13.18616 -12.92747 -12.89266 -12.72576 -12.68910 -12.59584 -11.89992 -11.75093 -11.35785 -11.18891 -11.14443 -10.83708 -10.48140 -10.30726 -10.03722 -9.36671 -8.91517 -8.67617 -8.35248 -6.13646 0.26023 0.38966 1.22206 1.42494 1.43443 1.49145 1.52598 1.56606 1.96315 2.13980 2.26138 2.42630 2.90755 2.98998 3.27518 3.64393 3.78735 4.03386 4.24049 4.24657 4.28942 4.33172 4.44619 4.47109 4.54257 4.56930 4.58267 4.60247 4.73310 4.98428 5.00485 5.23175 5.32213 5.39790 5.41736 5.49804 5.60551 5.62868 5.75758 6.04188 6.13214 6.19430 6.35225 7.05623 7.05952 7.07248 7.50734 8.73993 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.001948 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.970520 B =14367.814116 C =15112.770358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.322 5.322 3 C 0.003 3.997 4 N -0.579 5.579 5 C 0.724 3.276 6 O -0.617 6.617 7 N -0.653 5.653 8 C 0.177 3.823 9 C -0.151 4.151 10 C -0.076 4.076 11 C -0.162 4.162 12 C 0.154 3.846 13 N -0.660 5.660 14 C 0.535 3.465 15 O -0.537 6.537 16 C -0.129 4.129 17 S -0.143 6.143 18 C -0.548 4.548 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.258 1.258 26 C -0.160 4.160 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.402 0.598 34 H 0.431 0.569 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.112 0.888 38 H 0.424 0.576 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.272 0.728 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.339 29.403 -11.240 36.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 N -0.143 5.143 3 C -0.145 4.145 4 N -0.329 5.329 5 C 0.425 3.575 6 O -0.494 6.494 7 N -0.303 5.303 8 C 0.081 3.919 9 C -0.172 4.172 10 C -0.095 4.095 11 C -0.183 4.183 12 C 0.059 3.941 13 N -0.307 5.307 14 C 0.323 3.677 15 O -0.413 6.413 16 C -0.280 4.280 17 S 0.084 5.916 18 C -0.696 4.696 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.182 1.182 26 C -0.183 4.183 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.245 0.755 34 H 0.271 0.729 35 H 0.180 0.820 36 H 0.172 0.828 37 H 0.130 0.870 38 H 0.263 0.737 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.873 26.987 -11.794 35.529 hybrid contribution 1.254 1.724 2.257 3.105 sum -18.619 28.711 -9.537 35.524 Atomic orbital electron populations 1.23034 0.84758 1.03719 1.03203 1.62865 1.09518 1.14756 1.27123 1.22992 1.01605 0.86633 1.03221 1.44764 1.56906 1.24867 1.06410 1.15730 0.78314 0.80194 0.83244 1.91037 1.57673 1.57343 1.43343 1.42238 1.48984 1.31209 1.07829 1.17297 0.89488 0.88972 0.96182 1.21094 1.02119 0.94420 0.99533 1.21090 0.92832 0.96853 0.98757 1.21213 1.01339 1.00733 0.94987 1.17704 0.89357 0.96388 0.90646 1.43345 1.31577 1.08201 1.47587 1.20270 0.85429 0.82460 0.79570 1.90701 1.54930 1.44030 1.51633 1.23366 0.98242 1.03101 1.03321 1.85564 1.35485 1.00528 1.70031 1.23212 1.11772 0.96188 1.38388 0.89817 1.26136 1.01804 0.93988 0.97225 1.70185 1.41324 0.98273 1.44915 0.84939 0.76635 0.78375 0.77929 1.19404 1.20180 1.18165 1.20746 0.94651 1.00490 1.02423 0.93784 0.87170 0.91239 0.91263 0.87203 0.93661 0.75489 0.72885 0.81962 0.82806 0.87004 0.73718 0.86491 0.86999 0.91951 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.99 127.69 1.28 1.28 16 2 N -0.32 -2.21 4.20 -560.62 -2.35 -4.56 16 3 C 0.00 0.01 9.99 127.69 1.28 1.29 16 4 N -0.58 -7.48 4.78 -184.75 -0.88 -8.36 16 5 C 0.72 15.27 8.40 179.06 1.50 16.77 16 6 O -0.62 -19.15 14.86 -3.99 -0.06 -19.21 16 7 N -0.65 -11.38 5.30 -317.24 -1.68 -13.06 16 8 C 0.18 4.02 6.28 38.13 0.24 4.26 16 9 C -0.15 -2.89 9.96 22.41 0.22 -2.66 16 10 C -0.08 -1.77 10.03 22.23 0.22 -1.54 16 11 C -0.16 -5.06 8.65 22.42 0.19 -4.86 16 12 C 0.15 4.82 6.27 38.14 0.24 5.06 16 13 N -0.66 -20.69 5.34 -303.56 -1.62 -22.31 16 14 C 0.54 21.44 7.59 87.66 0.67 22.10 16 15 O -0.54 -25.93 13.55 -3.03 -0.04 -25.97 16 16 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 17 S -0.14 -8.10 20.57 -56.49 -1.16 -9.26 16 18 C -0.55 -31.75 9.50 67.95 0.65 -31.11 16 19 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 20 C 0.01 0.77 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 22 Si 1.00 44.25 29.55 68.60 2.03 46.27 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C -0.16 -4.49 8.57 22.51 0.19 -4.30 16 27 H 0.04 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.11 -0.09 8.12 -2.38 -0.02 -0.11 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 -0.07 8.12 -2.39 -0.02 -0.09 16 32 H 0.04 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.40 4.67 8.93 -215.49 -1.92 2.74 16 34 H 0.43 4.84 7.87 -92.71 -0.73 4.11 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.11 4.09 6.41 -2.91 -0.02 4.07 16 38 H 0.42 10.18 8.82 -92.71 -0.82 9.36 16 39 H 0.12 4.29 8.14 -2.40 -0.02 4.27 16 40 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 41 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 42 H 0.13 3.78 6.41 -2.91 -0.02 3.77 16 Total: -1.00 -84.68 375.32 -0.29 -84.96 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -2.38 Total: 25.18 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 7.58 Total: 2.61 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -6.25 Total: -104.59 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.10 Total: -45.18 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -84.68 -0.29 -84.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791272345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.935 kcal (2) G-P(sol) polarization free energy of solvation -84.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds