Wall clock time and date at job start Tue Mar 31 2020 20:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47149 * 2 1 4 4 C 1.46904 * 111.00391 * 174.38195 * 3 2 1 5 5 N 1.46501 * 109.47021 * 293.95839 * 4 3 2 6 6 N 1.40171 * 126.14181 * 269.95538 * 5 4 3 7 7 C 1.32240 * 107.75738 * 179.75874 * 6 5 4 8 8 C 1.40113 * 125.92558 * 180.29275 * 7 6 5 9 9 H 1.08005 * 120.00192 * 174.90791 * 8 7 6 10 10 C 1.40038 * 120.00087 * 354.89904 * 8 7 6 11 11 N 1.30796 * 119.99905 * 5.41411 * 10 8 7 12 12 Si 1.86801 * 119.99858 * 185.41038 * 10 8 7 13 13 H 1.48500 * 109.47142 * 94.99678 * 12 10 8 14 14 H 1.48501 * 109.47105 * 214.99468 * 12 10 8 15 15 H 1.48500 * 109.47096 * 334.99448 * 12 10 8 16 16 N 1.38500 * 108.14447 * 0.43078 * 7 6 5 17 17 C 1.46503 * 125.83452 * 179.82192 * 16 7 6 18 18 C 1.34728 * 108.33364 * 359.56308 * 16 7 6 19 19 S 1.71192 * 125.97592 * 180.26286 * 18 16 7 20 20 C 1.46899 * 111.00378 * 298.33557 * 3 2 1 21 21 H 1.09005 * 109.46699 * 44.80265 * 20 3 2 22 22 C 1.52996 * 109.47714 * 164.80243 * 20 3 2 23 23 C 1.53001 * 109.47063 * 284.80593 * 20 3 2 24 24 F 1.39910 * 109.47075 * 53.61034 * 23 20 3 25 25 F 1.39906 * 109.47207 * 173.60672 * 23 20 3 26 26 F 1.39894 * 109.47203 * 293.61270 * 23 20 3 27 27 H 1.09000 * 109.46970 * 307.37446 * 1 2 3 28 28 H 1.08999 * 109.46971 * 67.37453 * 1 2 3 29 29 H 1.08998 * 109.47140 * 187.37970 * 1 2 3 30 30 H 1.09000 * 109.47039 * 240.00331 * 2 1 3 31 31 H 1.08999 * 109.47133 * 119.99635 * 2 1 3 32 32 H 1.08994 * 109.47615 * 173.95446 * 4 3 2 33 33 H 1.09004 * 109.46855 * 53.95103 * 4 3 2 34 34 H 0.97003 * 119.99749 * 179.97438 * 11 10 8 35 35 H 1.09007 * 109.46712 * 269.72152 * 17 16 7 36 36 H 1.08991 * 109.47203 * 149.72205 * 17 16 7 37 37 H 1.09000 * 109.46961 * 29.71209 * 17 16 7 38 38 H 1.09005 * 109.47019 * 60.00218 * 22 20 3 39 39 H 1.08997 * 109.47276 * 180.02562 * 22 20 3 40 40 H 1.08997 * 109.47307 * 300.00272 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4820 1.4265 0.1343 5 7 3.8656 0.9211 1.4547 6 7 4.0146 1.6845 2.6208 7 6 4.3630 0.8644 3.5980 8 6 4.6049 1.2279 4.9294 9 1 4.8046 0.4669 5.6692 10 6 4.5878 2.5781 5.3007 11 7 4.2425 3.4914 4.4304 12 14 5.0580 3.0746 7.0391 13 1 6.4946 3.4490 7.0755 14 1 4.2333 4.2346 7.4627 15 1 4.8199 1.9350 7.9609 16 7 4.4504 -0.4156 3.0763 17 6 4.8128 -1.6230 3.8226 18 6 4.1396 -0.3615 1.7665 19 16 4.0995 -1.6894 0.6868 20 6 1.5815 2.0984 -1.2071 21 1 0.5283 1.8868 -1.3919 22 6 1.7720 3.6033 -1.0076 23 6 2.4128 1.6333 -2.4044 24 9 2.3549 0.2386 -2.4988 25 9 1.9016 2.2017 -3.5761 26 9 3.7421 2.0342 -2.2330 27 1 -0.3633 0.6238 0.8167 28 1 -0.3633 0.3953 -0.9486 29 1 -0.3633 -1.0191 0.1320 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8280 2.4541 0.0239 33 1 3.9355 0.8054 -0.6383 34 1 4.2303 4.4266 4.6878 35 1 5.8926 -1.7663 3.7796 36 1 4.3140 -2.4860 3.3819 37 1 4.5018 -1.5149 4.8617 38 1 2.8252 3.8148 -0.8228 39 1 1.4464 4.1325 -1.9031 40 1 1.1797 3.9346 -0.1547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794677536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:34 Heat of formation + Delta-G solvation = -55.322230 kcal Electronic energy + Delta-G solvation = -29335.041718 eV Core-core repulsion = 24898.514679 eV Total energy + Delta-G solvation = -4436.527039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.17777 -47.62736 -47.59820 -40.96543 -38.26724 -34.50511 -33.94207 -32.27161 -31.09132 -29.56951 -27.28721 -26.62144 -26.20146 -24.44400 -22.63503 -21.84246 -20.98999 -20.60810 -18.68562 -18.42438 -17.86338 -17.25056 -16.55897 -15.91303 -15.78981 -15.53963 -15.04881 -14.84291 -14.72347 -14.59577 -14.18132 -14.02339 -13.80630 -13.59872 -13.44583 -13.19473 -13.13267 -12.72788 -12.48884 -12.28493 -12.22907 -11.95448 -11.84443 -11.64049 -11.54295 -11.31059 -11.19359 -10.95673 -10.69796 -10.64037 -10.51595 -10.08086 -9.59322 -9.27425 -8.91713 -8.38213 -7.07715 -6.83541 -6.69544 -5.17376 2.20627 2.46973 2.75624 2.77342 2.89391 2.93457 3.21378 3.49436 3.60932 3.69421 3.81468 4.00505 4.11089 4.28558 4.80007 4.85459 4.97053 5.08412 5.25540 5.46565 5.50535 5.58928 5.62628 5.72977 5.81048 5.81577 6.03277 6.05595 6.14863 6.19201 6.38630 6.45460 6.49876 6.77348 6.90827 6.94946 6.99840 7.49627 7.71635 8.19322 8.31788 9.09559 9.90132 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.004389 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.679174 B = 6377.565108 C = 7415.652684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.019 3.981 3 N -0.525 5.525 4 C 0.311 3.689 5 N -0.371 5.371 6 N -0.330 5.330 7 C 0.372 3.628 8 C -0.438 4.438 9 H 0.098 0.902 10 C 0.077 3.923 11 N -0.735 5.735 12 Si 0.928 3.072 13 H -0.267 1.267 14 H -0.273 1.273 15 H -0.259 1.259 16 N -0.513 5.513 17 C 0.100 3.900 18 C 0.463 3.537 19 S -0.708 6.708 20 C 0.049 3.951 21 H 0.131 0.869 22 C -0.149 4.149 23 C 0.410 3.590 24 F -0.172 7.172 25 F -0.187 7.187 26 F -0.182 7.182 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.286 0.714 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 1.816 -4.706 6.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 N -0.250 5.250 4 C 0.100 3.900 5 N -0.156 5.156 6 N -0.162 5.162 7 C 0.123 3.877 8 C -0.479 4.479 9 H 0.116 0.884 10 C -0.150 4.150 11 N -0.359 5.359 12 Si 0.752 3.248 13 H -0.192 1.192 14 H -0.198 1.198 15 H -0.183 1.183 16 N -0.214 5.214 17 C -0.043 4.043 18 C 0.093 3.907 19 S -0.583 6.583 20 C -0.063 4.063 21 H 0.149 0.851 22 C -0.207 4.207 23 C 0.354 3.646 24 F -0.153 7.153 25 F -0.169 7.169 26 F -0.163 7.163 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.306 2.514 -5.298 7.908 hybrid contribution 0.893 -0.306 0.652 1.147 sum -4.413 2.208 -4.646 6.778 Atomic orbital electron populations 1.21842 0.95447 1.01999 1.01163 1.23011 0.95291 0.86890 1.05603 1.62279 1.12034 1.17666 1.32986 1.22283 0.86594 1.01008 0.80118 1.49102 1.52100 1.03824 1.10596 1.79445 1.38147 1.10878 0.87687 1.21351 0.93574 0.77032 0.95734 1.18355 1.46124 0.93853 0.89587 0.88439 1.25835 0.93292 0.95629 1.00267 1.69883 1.28475 1.02475 1.35045 0.85950 0.79355 0.79270 0.80267 1.19155 1.19764 1.18271 1.45992 1.58134 1.10257 1.06969 1.21774 1.01324 0.85134 0.96103 1.22983 0.89641 0.90646 0.87397 1.92812 1.82707 1.31598 1.51218 1.23250 1.00497 0.98196 0.84353 0.85147 1.21910 1.04450 0.90577 1.03738 1.22504 0.80002 0.75772 0.86337 1.93145 1.96203 1.29787 1.96155 1.93157 1.86774 1.84807 1.52147 1.93154 1.37632 1.90445 1.95114 0.92021 0.93504 0.91908 0.90461 0.88671 0.87073 0.89683 0.90327 0.91392 0.89193 0.89720 0.91022 0.91005 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.56 37.16 0.36 -1.71 16 2 C 0.02 0.33 4.29 -3.83 -0.02 0.31 16 3 N -0.53 -8.96 4.59 -230.53 -1.06 -10.02 16 4 C 0.31 6.07 4.32 -63.31 -0.27 5.79 16 5 N -0.37 -8.53 3.58 -65.05 -0.23 -8.77 16 6 N -0.33 -8.33 10.79 31.21 0.34 -8.00 16 7 C 0.37 9.04 7.50 -155.27 -1.16 7.87 16 8 C -0.44 -10.03 8.99 -38.20 -0.34 -10.37 16 9 H 0.10 2.00 7.07 -52.48 -0.37 1.63 16 10 C 0.08 1.70 5.49 -17.32 -0.10 1.60 16 11 N -0.73 -17.44 11.92 55.55 0.66 -16.77 16 12 Si 0.93 16.32 29.56 -169.99 -5.03 11.30 16 13 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 14 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 15 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 16 N -0.51 -11.45 3.17 -124.66 -0.39 -11.84 16 17 C 0.10 1.74 10.67 59.85 0.64 2.38 16 18 C 0.46 10.81 6.59 -86.93 -0.57 10.24 16 19 S -0.71 -16.82 27.20 -107.50 -2.92 -19.74 16 20 C 0.05 0.66 2.44 -67.71 -0.16 0.49 16 21 H 0.13 1.48 5.87 -51.93 -0.30 1.17 16 22 C -0.15 -1.75 8.98 37.16 0.33 -1.41 16 23 C 0.41 5.83 2.37 37.16 0.09 5.92 16 24 F -0.17 -2.75 13.75 2.25 0.03 -2.72 16 25 F -0.19 -2.44 17.05 2.25 0.04 -2.40 16 26 F -0.18 -2.79 13.19 2.25 0.03 -2.76 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.55 6.52 -51.93 -0.34 0.22 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.42 5.09 -51.93 -0.26 1.16 16 31 H 0.10 2.03 5.15 -51.93 -0.27 1.76 16 32 H 0.11 2.09 5.89 -51.93 -0.31 1.78 16 33 H 0.09 1.73 5.56 -51.93 -0.29 1.44 16 34 H 0.29 6.12 8.30 -40.82 -0.34 5.79 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.55 7.61 -51.93 -0.40 1.15 16 37 H 0.08 1.30 7.26 -51.93 -0.38 0.92 16 38 H 0.07 0.92 6.09 -51.93 -0.32 0.60 16 39 H 0.07 0.67 7.97 -51.93 -0.41 0.26 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 338.27 15.07 5.10 5.10 Total: -1.00 -28.95 338.27 -9.12 -38.07 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.47 Total: 7.44 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: -1.22 Total: 21.12 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.69 Total: -55.39 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 0.10 Total: -7.88 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.30 kcal Atomic # 16 Polarization: -16.82 SS G_CDS: -2.92 Total: -19.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.95 -9.12 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794677536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.248 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds