Wall clock time and date at job start Tue Mar 31 2020 20:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47149 * 2 1 4 4 C 1.46904 * 111.00391 * 174.38195 * 3 2 1 5 5 N 1.46501 * 109.47021 * 293.95839 * 4 3 2 6 6 N 1.40171 * 126.14181 * 269.95538 * 5 4 3 7 7 C 1.32240 * 107.75738 * 179.75874 * 6 5 4 8 8 C 1.40113 * 125.92558 * 180.29275 * 7 6 5 9 9 H 1.08005 * 120.00192 * 174.90791 * 8 7 6 10 10 C 1.40038 * 120.00087 * 354.89904 * 8 7 6 11 11 N 1.30796 * 119.99905 * 5.41411 * 10 8 7 12 12 Si 1.86801 * 119.99858 * 185.41038 * 10 8 7 13 13 H 1.48500 * 109.47142 * 94.99678 * 12 10 8 14 14 H 1.48501 * 109.47105 * 214.99468 * 12 10 8 15 15 H 1.48500 * 109.47096 * 334.99448 * 12 10 8 16 16 N 1.38500 * 108.14447 * 0.43078 * 7 6 5 17 17 C 1.46503 * 125.83452 * 179.82192 * 16 7 6 18 18 C 1.34728 * 108.33364 * 359.56308 * 16 7 6 19 19 S 1.71192 * 125.97592 * 180.26286 * 18 16 7 20 20 C 1.46899 * 111.00378 * 298.33557 * 3 2 1 21 21 H 1.09005 * 109.46699 * 44.80265 * 20 3 2 22 22 C 1.52996 * 109.47714 * 164.80243 * 20 3 2 23 23 C 1.53001 * 109.47063 * 284.80593 * 20 3 2 24 24 F 1.39910 * 109.47075 * 53.61034 * 23 20 3 25 25 F 1.39906 * 109.47207 * 173.60672 * 23 20 3 26 26 F 1.39894 * 109.47203 * 293.61270 * 23 20 3 27 27 H 1.09000 * 109.46970 * 307.37446 * 1 2 3 28 28 H 1.08999 * 109.46971 * 67.37453 * 1 2 3 29 29 H 1.08998 * 109.47140 * 187.37970 * 1 2 3 30 30 H 1.09000 * 109.47039 * 240.00331 * 2 1 3 31 31 H 1.08999 * 109.47133 * 119.99635 * 2 1 3 32 32 H 1.08994 * 109.47615 * 173.95446 * 4 3 2 33 33 H 1.09004 * 109.46855 * 53.95103 * 4 3 2 34 34 H 0.97003 * 119.99749 * 179.97438 * 11 10 8 35 35 H 1.09007 * 109.46712 * 269.72152 * 17 16 7 36 36 H 1.08991 * 109.47203 * 149.72205 * 17 16 7 37 37 H 1.09000 * 109.46961 * 29.71209 * 17 16 7 38 38 H 1.09005 * 109.47019 * 60.00218 * 22 20 3 39 39 H 1.08997 * 109.47276 * 180.02562 * 22 20 3 40 40 H 1.08997 * 109.47307 * 300.00272 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4820 1.4265 0.1343 5 7 3.8656 0.9211 1.4547 6 7 4.0146 1.6845 2.6208 7 6 4.3630 0.8644 3.5980 8 6 4.6049 1.2279 4.9294 9 1 4.8046 0.4669 5.6692 10 6 4.5878 2.5781 5.3007 11 7 4.2425 3.4914 4.4304 12 14 5.0580 3.0746 7.0391 13 1 6.4946 3.4490 7.0755 14 1 4.2333 4.2346 7.4627 15 1 4.8199 1.9350 7.9609 16 7 4.4504 -0.4156 3.0763 17 6 4.8128 -1.6230 3.8226 18 6 4.1396 -0.3615 1.7665 19 16 4.0995 -1.6894 0.6868 20 6 1.5815 2.0984 -1.2071 21 1 0.5283 1.8868 -1.3919 22 6 1.7720 3.6033 -1.0076 23 6 2.4128 1.6333 -2.4044 24 9 2.3549 0.2386 -2.4988 25 9 1.9016 2.2017 -3.5761 26 9 3.7421 2.0342 -2.2330 27 1 -0.3633 0.6238 0.8167 28 1 -0.3633 0.3953 -0.9486 29 1 -0.3633 -1.0191 0.1320 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8280 2.4541 0.0239 33 1 3.9355 0.8054 -0.6383 34 1 4.2303 4.4266 4.6878 35 1 5.8926 -1.7663 3.7796 36 1 4.3140 -2.4860 3.3819 37 1 4.5018 -1.5149 4.8617 38 1 2.8252 3.8148 -0.8228 39 1 1.4464 4.1325 -1.9031 40 1 1.1797 3.9346 -0.1547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794677536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:33 Heat of formation + Delta-G solvation = -71.381371 kcal Electronic energy + Delta-G solvation = -29335.738095 eV Core-core repulsion = 24898.514679 eV Total energy + Delta-G solvation = -4437.223416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.35440 -48.83092 -48.74476 -42.70004 -39.60689 -36.14405 -35.61711 -33.47086 -32.71663 -31.06342 -28.73291 -28.31071 -27.34788 -25.95042 -23.88216 -23.51003 -22.65002 -21.94562 -19.98265 -19.62007 -19.41335 -18.72526 -18.01270 -17.52756 -17.32139 -16.97473 -16.49225 -16.28657 -16.17022 -16.04986 -15.38066 -15.17169 -15.09515 -14.95697 -14.69587 -14.54211 -14.33237 -13.99062 -13.89019 -13.72921 -13.45350 -13.29841 -13.18947 -12.99789 -12.79314 -12.77170 -12.52928 -12.47027 -12.24702 -11.97044 -11.89865 -11.68619 -11.39516 -10.91768 -10.66135 -9.78232 -8.79633 -8.65885 -8.52803 -6.96820 0.45599 0.73579 1.28674 1.46137 1.53762 1.61929 1.63258 1.86356 2.11530 2.30873 2.48450 2.65882 2.89453 3.08860 3.11411 3.47175 3.74309 3.85503 3.93449 4.00977 4.23076 4.30771 4.44090 4.47821 4.55656 4.68418 4.69335 4.71194 4.84454 4.93991 5.04062 5.10372 5.16450 5.20693 5.25636 5.53252 5.62509 5.84066 6.02418 6.47136 6.57292 7.30828 8.25595 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.004389 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.679174 B = 6377.565108 C = 7415.652684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.025 3.975 3 N -0.529 5.529 4 C 0.313 3.687 5 N -0.371 5.371 6 N -0.362 5.362 7 C 0.351 3.649 8 C -0.451 4.451 9 H 0.119 0.881 10 C 0.036 3.964 11 N -0.772 5.772 12 Si 1.006 2.994 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.246 1.246 16 N -0.514 5.514 17 C 0.094 3.906 18 C 0.453 3.547 19 S -0.731 6.731 20 C 0.052 3.948 21 H 0.158 0.842 22 C -0.145 4.145 23 C 0.412 3.588 24 F -0.183 7.183 25 F -0.176 7.176 26 F -0.191 7.191 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.292 0.708 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.556 2.535 -3.739 7.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 N -0.254 5.254 4 C 0.102 3.898 5 N -0.157 5.157 6 N -0.195 5.195 7 C 0.103 3.897 8 C -0.492 4.492 9 H 0.137 0.863 10 C -0.187 4.187 11 N -0.397 5.397 12 Si 0.825 3.175 13 H -0.190 1.190 14 H -0.196 1.196 15 H -0.169 1.169 16 N -0.215 5.215 17 C -0.047 4.047 18 C 0.082 3.918 19 S -0.607 6.607 20 C -0.060 4.060 21 H 0.175 0.825 22 C -0.202 4.202 23 C 0.355 3.645 24 F -0.165 7.165 25 F -0.158 7.158 26 F -0.173 7.173 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.021 3.214 -4.352 8.094 hybrid contribution 1.107 -0.493 0.306 1.250 sum -4.914 2.721 -4.045 6.922 Atomic orbital electron populations 1.21783 0.92603 1.02637 1.02530 1.22832 0.97508 0.86753 1.03104 1.62256 1.10190 1.17675 1.35244 1.22308 0.88326 1.00570 0.78571 1.49389 1.51626 1.03599 1.11048 1.79350 1.39381 1.12113 0.88635 1.21745 0.93949 0.77697 0.96316 1.18912 1.45701 0.95097 0.89481 0.86343 1.26872 0.92398 0.95096 1.04363 1.69974 1.29116 1.03191 1.37400 0.84807 0.78755 0.79096 0.74865 1.18953 1.19560 1.16893 1.46268 1.57592 1.10954 1.06681 1.22053 1.02266 0.83530 0.96831 1.22986 0.90251 0.90625 0.87895 1.92709 1.83871 1.32097 1.51985 1.23478 1.01429 0.98640 0.82421 0.82482 1.21926 1.03624 0.89467 1.05202 1.22558 0.79718 0.75223 0.86975 1.93125 1.96224 1.30895 1.96240 1.93177 1.86521 1.84516 1.51569 1.93138 1.38479 1.90451 1.95193 0.92358 0.90720 0.91282 0.91473 0.92662 0.86869 0.90828 0.89691 0.89995 0.89213 0.87425 0.92502 0.88061 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.56 71.98 0.69 -3.01 16 2 C 0.02 0.88 4.29 86.30 0.37 1.25 16 3 N -0.53 -18.03 4.59 -883.25 -4.05 -22.09 16 4 C 0.31 12.51 4.32 170.80 0.74 13.25 16 5 N -0.37 -17.53 3.58 -359.72 -1.29 -18.82 16 6 N -0.36 -18.66 10.79 -55.17 -0.60 -19.26 16 7 C 0.35 17.18 7.50 133.52 1.00 18.18 16 8 C -0.45 -20.29 8.99 23.16 0.21 -20.08 16 9 H 0.12 4.64 7.07 -2.91 -0.02 4.62 16 10 C 0.04 1.56 5.49 85.28 0.47 2.03 16 11 N -0.77 -36.65 11.92 21.84 0.26 -36.39 16 12 Si 1.01 32.01 29.56 68.60 2.03 34.04 16 13 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 14 H -0.27 -8.47 7.11 99.48 0.71 -7.77 16 15 H -0.25 -7.26 7.11 99.48 0.71 -6.55 16 16 N -0.51 -23.14 3.17 -548.31 -1.74 -24.88 16 17 C 0.09 3.25 10.67 127.77 1.36 4.61 16 18 C 0.45 21.67 6.59 179.06 1.18 22.85 16 19 S -0.73 -35.48 27.20 -56.49 -1.54 -37.01 16 20 C 0.05 1.30 2.44 44.91 0.11 1.41 16 21 H 0.16 3.12 5.87 -2.38 -0.01 3.11 16 22 C -0.15 -3.16 8.98 71.98 0.65 -2.52 16 23 C 0.41 11.32 2.37 71.98 0.17 11.49 16 24 F -0.18 -5.83 13.75 44.97 0.62 -5.21 16 25 F -0.18 -4.26 17.05 44.97 0.77 -3.49 16 26 F -0.19 -5.88 13.19 44.97 0.59 -5.28 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.57 6.52 -2.39 -0.02 1.55 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 2.50 5.09 -2.39 -0.01 2.49 16 31 H 0.05 2.41 5.15 -2.39 -0.01 2.40 16 32 H 0.11 4.39 5.89 -2.39 -0.01 4.38 16 33 H 0.07 3.10 5.56 -2.38 -0.01 3.09 16 34 H 0.29 12.49 8.30 -92.71 -0.77 11.72 16 35 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.09 3.08 7.61 -2.39 -0.02 3.06 16 37 H 0.11 3.14 7.26 -2.39 -0.02 3.13 16 38 H 0.06 1.42 6.09 -2.38 -0.01 1.41 16 39 H 0.10 1.62 7.97 -2.39 -0.02 1.60 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -63.53 338.27 3.11 -60.43 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 1.10 Total: 28.51 kcal Atomic # 6 Polarization: 42.52 SS G_CDS: 6.94 Total: 49.46 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -7.41 Total: -121.43 kcal Atomic # 9 Polarization: -15.96 SS G_CDS: 1.98 Total: -13.99 kcal Atomic # 14 Polarization: 32.01 SS G_CDS: 2.03 Total: 34.04 kcal Atomic # 16 Polarization: -35.48 SS G_CDS: -1.54 Total: -37.01 kcal Total: -63.53 3.11 -60.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794677536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.955 kcal (2) G-P(sol) polarization free energy of solvation -63.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds