Wall clock time and date at job start Tue Mar 31 2020 20:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99547 * 2 1 4 4 C 1.39910 * 119.99984 * 179.97438 * 2 1 3 5 5 C 1.38883 * 120.00376 * 179.72615 * 4 2 1 6 6 C 1.38072 * 119.99238 * 179.71651 * 5 4 2 7 7 C 1.38835 * 120.00592 * 0.56209 * 6 5 4 8 8 N 1.40201 * 119.99792 * 179.69879 * 7 6 5 9 9 C 1.34774 * 120.00197 * 213.29851 * 8 7 6 10 10 O 1.21595 * 119.99969 * 5.32926 * 9 8 7 11 11 N 1.34778 * 120.00199 * 185.33163 * 9 8 7 12 12 N 1.40097 * 119.99579 * 0.02562 * 11 9 8 13 13 C 1.34778 * 120.00004 * 179.97438 * 12 11 9 14 14 O 1.21283 * 119.99868 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00264 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47170 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00033 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00002 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00694 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46991 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47340 * 119.99790 * 21 19 17 24 24 H 1.48498 * 109.46975 * 239.99762 * 21 19 17 25 25 C 1.38840 * 120.01300 * 359.71369 * 7 6 5 26 26 C 1.38080 * 120.00088 * 0.02562 * 25 7 6 27 27 H 1.09002 * 109.47470 * 269.99833 * 1 2 3 28 28 H 1.09001 * 109.47374 * 29.99907 * 1 2 3 29 29 H 1.09000 * 109.46962 * 150.00017 * 1 2 3 30 30 H 1.08996 * 109.47091 * 269.99333 * 3 2 1 31 31 H 1.08993 * 109.47643 * 30.00286 * 3 2 1 32 32 H 1.09003 * 109.46825 * 149.99862 * 3 2 1 33 33 H 1.07998 * 119.99938 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.99886 * 180.27416 * 6 5 4 35 35 H 0.97001 * 119.99668 * 33.28768 * 8 7 6 36 36 H 0.96997 * 120.00076 * 179.97438 * 11 9 8 37 37 H 0.97005 * 120.00636 * 359.97438 * 12 11 9 38 38 H 1.08995 * 109.47584 * 300.00354 * 15 13 12 39 39 H 1.09000 * 109.46750 * 60.00376 * 15 13 12 40 40 H 0.96995 * 120.00264 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.00112 * 179.97438 * 25 7 6 42 42 H 1.07994 * 120.00224 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1645 -1.2117 0.0005 5 6 3.5534 -1.2118 -0.0052 6 6 4.2435 -2.4076 0.0012 7 6 3.5493 -3.6099 0.0017 8 7 4.2502 -4.8241 0.0019 9 6 3.7422 -5.8956 -0.6385 10 8 2.7260 -5.7850 -1.2970 11 7 4.3605 -7.0899 -0.5491 12 7 5.5310 -7.2175 0.2100 13 6 6.1491 -8.4118 0.3000 14 8 5.6922 -9.3760 -0.2767 15 6 7.4085 -8.5489 1.1161 16 16 7.9925 -10.2605 1.0413 17 6 9.4310 -10.1374 2.0513 18 1 9.6998 -9.1902 2.4950 19 6 10.2186 -11.2578 2.2767 20 7 9.8907 -12.4125 1.7365 21 14 11.7433 -11.1275 3.3482 22 1 11.8900 -9.7314 3.8326 23 1 11.6121 -12.0437 4.5095 24 1 12.9402 -11.5036 2.5537 25 6 2.1609 -3.6101 0.0016 26 6 1.4702 -2.4145 0.0006 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3791 1.5834 -1.0276 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1385 0.5139 33 1 4.0934 -0.2765 -0.0105 34 1 5.3235 -2.4078 0.0013 35 1 5.1009 -4.8929 0.4628 36 1 3.9946 -7.8611 -1.0097 37 1 5.8967 -6.4463 0.6710 38 1 8.1749 -7.8853 0.7158 39 1 7.2010 -8.2812 2.1521 40 1 10.4414 -13.1953 1.8937 41 1 1.6210 -4.5455 0.0016 42 1 0.3903 -2.4146 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802117987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:24 Heat of formation + Delta-G solvation = 23.870297 kcal Electronic energy + Delta-G solvation = -25091.027101 eV Core-core repulsion = 21199.790847 eV Total energy + Delta-G solvation = -3891.236253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04075 -39.76072 -38.98100 -36.77910 -35.72484 -34.18286 -32.51464 -31.66282 -31.42494 -29.28080 -28.54902 -28.41354 -25.57161 -25.00785 -22.98472 -22.13350 -21.41499 -20.61626 -19.41597 -18.18640 -17.90307 -17.38162 -16.59874 -16.25126 -15.83737 -15.61331 -15.43448 -15.13152 -15.02554 -14.87796 -14.67434 -14.22414 -13.99305 -13.71531 -13.52083 -13.09513 -12.97057 -12.76590 -12.71593 -12.50587 -12.41268 -12.39418 -11.38934 -11.26826 -11.12702 -11.11816 -10.92078 -10.83831 -10.55664 -9.92397 -9.81935 -9.39646 -9.15516 -9.12897 -8.43591 -8.36875 -7.32373 -6.61669 -6.30258 -4.02532 1.19885 1.28454 1.72541 2.60719 2.63629 2.80671 2.95181 3.13980 3.16874 3.25553 3.36931 3.68729 4.10765 4.47151 4.54822 4.57873 4.73922 4.84172 4.88888 4.91495 5.05607 5.12100 5.17531 5.23822 5.28115 5.30813 5.33721 5.44918 5.66511 5.70581 5.82142 5.91620 5.93808 6.10398 6.28040 6.36371 6.54574 6.67809 6.91255 7.16870 7.24398 7.49830 7.51963 8.10585 8.26686 8.40656 9.15428 10.77128 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.001748 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.693005 B =16016.514337 C =16991.998545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.641 5.641 3 C 0.095 3.905 4 C 0.198 3.802 5 C -0.178 4.178 6 C -0.096 4.096 7 C 0.107 3.893 8 N -0.682 5.682 9 C 0.712 3.288 10 O -0.565 6.565 11 N -0.525 5.525 12 N -0.541 5.541 13 C 0.536 3.464 14 O -0.506 6.506 15 C -0.147 4.147 16 S -0.050 6.050 17 C -0.539 4.539 18 H 0.075 0.925 19 C 0.075 3.925 20 N -0.866 5.866 21 Si 0.920 3.080 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.069 4.069 26 C -0.177 4.177 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.401 0.599 36 H 0.446 0.554 37 H 0.416 0.584 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.269 0.731 41 H 0.136 0.864 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 27.671 -1.192 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.355 5.355 3 C -0.049 4.049 4 C 0.097 3.903 5 C -0.201 4.201 6 C -0.117 4.117 7 C 0.012 3.988 8 N -0.332 5.332 9 C 0.412 3.588 10 O -0.438 6.438 11 N -0.280 5.280 12 N -0.296 5.296 13 C 0.322 3.678 14 O -0.377 6.377 15 C -0.299 4.299 16 S 0.176 5.824 17 C -0.687 4.687 18 H 0.094 0.906 19 C -0.135 4.135 20 N -0.501 5.501 21 Si 0.747 3.253 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.089 4.089 26 C -0.199 4.199 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.237 0.763 36 H 0.292 0.708 37 H 0.257 0.743 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.154 0.846 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.096 26.183 -2.611 30.846 hybrid contribution 2.042 1.211 1.598 2.862 sum -14.054 27.395 -1.013 30.806 Atomic orbital electron populations 1.21615 0.79608 1.02631 1.01077 1.46303 1.04875 1.03036 1.81244 1.21603 0.97241 0.84960 1.01053 1.17839 0.91179 0.85656 0.95654 1.20414 0.91923 0.97915 1.09809 1.20597 0.99506 0.90473 1.01129 1.17255 0.91138 0.83696 1.06713 1.42499 1.25076 1.09214 1.56449 1.15629 0.83172 0.79587 0.80398 1.91030 1.24907 1.82207 1.45673 1.44485 1.20101 1.11472 1.51914 1.45217 1.19840 1.13378 1.51192 1.20684 0.84996 0.80750 0.81356 1.90757 1.65116 1.36916 1.44911 1.23499 0.95371 1.09411 1.01576 1.85525 1.31169 0.98961 1.66766 1.22897 1.11331 0.98794 1.35654 0.90638 1.24999 0.98129 0.94442 0.95941 1.70012 1.38269 0.99940 1.41907 0.86093 0.81271 0.78361 0.79624 1.19565 1.20522 1.20528 1.20952 0.92414 0.98538 0.97040 1.20565 0.99693 0.90432 1.09235 0.93476 0.91706 0.91232 0.93520 0.91711 0.91311 0.85651 0.85656 0.76300 0.70769 0.74287 0.88429 0.88426 0.92092 0.84588 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.19 59.85 0.61 1.10 16 2 N -0.64 -4.61 3.42 -187.49 -0.64 -5.25 16 3 C 0.09 0.46 10.18 59.85 0.61 1.07 16 4 C 0.20 1.80 6.56 -83.69 -0.55 1.25 16 5 C -0.18 -1.50 9.20 -39.40 -0.36 -1.86 16 6 C -0.10 -0.84 9.95 -39.42 -0.39 -1.23 16 7 C 0.11 1.13 6.28 -83.58 -0.53 0.61 16 8 N -0.68 -6.78 5.31 -14.17 -0.08 -6.85 16 9 C 0.71 9.14 8.41 -86.92 -0.73 8.41 16 10 O -0.56 -8.96 14.86 5.28 0.08 -8.88 16 11 N -0.52 -6.67 6.26 27.64 0.17 -6.50 16 12 N -0.54 -6.43 6.25 31.22 0.20 -6.23 16 13 C 0.54 8.86 7.96 -10.99 -0.09 8.77 16 14 O -0.51 -10.48 15.70 5.56 0.09 -10.40 16 15 C -0.15 -2.59 6.16 36.00 0.22 -2.37 16 16 S -0.05 -1.28 20.57 -107.50 -2.21 -3.49 16 17 C -0.54 -14.52 9.50 30.94 0.29 -14.23 16 18 H 0.08 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -25.26 13.22 55.49 0.73 -24.53 16 21 Si 0.92 20.60 29.55 -169.99 -5.02 15.57 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.07 -0.78 8.65 -39.42 -0.34 -1.12 16 26 C -0.18 -1.73 9.20 -39.40 -0.36 -2.10 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.24 8.07 -51.93 -0.42 -0.18 16 29 H 0.07 0.37 6.20 -51.93 -0.32 0.05 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.22 8.07 -51.93 -0.42 -0.20 16 32 H 0.07 0.30 6.21 -51.93 -0.32 -0.02 16 33 H 0.13 0.81 6.14 -52.49 -0.32 0.49 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.40 2.80 6.76 -40.82 -0.28 2.53 16 36 H 0.45 6.13 8.10 -182.60 -1.48 4.65 16 37 H 0.42 3.35 6.72 -182.59 -1.23 2.12 16 38 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 39 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.14 1.72 6.41 -52.49 -0.34 1.38 16 42 H 0.13 1.03 6.14 -52.49 -0.32 0.71 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -35.66 369.77 -9.93 -45.58 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.10 Total: 5.15 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.71 Total: 0.25 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.39 Total: -49.36 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.17 Total: -19.27 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.21 Total: -3.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.66 -9.93 -45.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802117987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.453 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds