Wall clock time and date at job start Tue Mar 31 2020 20:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99661 * 2 1 4 4 N 1.34772 * 119.99921 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99928 * 180.02562 * 4 2 1 6 6 H 1.09001 * 110.35086 * 327.13952 * 5 4 2 7 7 C 1.54595 * 110.31281 * 89.28070 * 5 4 2 8 8 C 1.54938 * 102.92554 * 140.87520 * 7 5 4 9 9 N 1.48537 * 103.22225 * 322.58424 * 8 7 5 10 10 C 1.46901 * 110.99782 * 159.72054 * 9 8 7 11 11 C 1.50700 * 109.47273 * 52.60429 * 10 9 8 12 12 C 1.38107 * 120.03015 * 260.00381 * 11 10 9 13 13 C 1.38389 * 120.05919 * 179.97438 * 12 11 10 14 14 Cl 1.73597 * 119.94480 * 180.02562 * 13 12 11 15 15 C 1.38430 * 120.10716 * 0.02562 * 13 12 11 16 16 C 1.38063 * 120.05763 * 359.97438 * 15 13 12 17 17 C 1.38849 * 120.02562 * 79.72332 * 11 10 9 18 18 O 1.35768 * 120.06123 * 359.97438 * 17 11 10 19 19 C 1.34819 * 117.00534 * 174.14543 * 18 17 11 20 20 H 1.07998 * 119.99969 * 5.06341 * 19 18 17 21 21 C 1.38647 * 120.00194 * 185.06376 * 19 18 17 22 22 N 1.31556 * 119.99937 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00098 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47282 * 59.99960 * 23 21 19 25 25 H 1.48500 * 109.47176 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47242 * 299.99868 * 23 21 19 27 27 C 1.47904 * 105.82229 * 39.20835 * 9 8 7 28 28 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47104 * 299.99969 * 1 2 3 30 30 H 1.08997 * 109.47536 * 59.99425 * 1 2 3 31 31 H 0.97001 * 120.00192 * 359.97438 * 4 2 1 32 32 H 1.09003 * 110.72117 * 259.23326 * 7 5 4 33 33 H 1.09004 * 110.72507 * 22.33306 * 7 5 4 34 34 H 1.08997 * 110.66905 * 204.15421 * 8 7 5 35 35 H 1.08994 * 110.66673 * 81.01501 * 8 7 5 36 36 H 1.08996 * 109.47212 * 172.60780 * 10 9 8 37 37 H 1.09004 * 109.47127 * 292.60400 * 10 9 8 38 38 H 1.08009 * 119.97078 * 359.97438 * 12 11 10 39 39 H 1.08005 * 119.97015 * 180.02562 * 15 13 12 40 40 H 1.07999 * 120.02702 * 180.02562 * 16 15 13 41 41 H 0.97002 * 120.00389 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.91753 * 94.01391 * 27 9 8 43 43 H 1.08994 * 109.92082 * 215.11580 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0251 -0.3084 -0.5537 7 6 4.1820 -1.1499 1.4500 8 6 5.4010 -2.1038 1.3801 9 7 4.9470 -3.1675 0.4481 10 6 6.0910 -3.8938 -0.1191 11 6 6.9820 -4.3774 0.9960 12 6 8.1303 -3.6797 1.3152 13 6 8.9486 -4.1230 2.3394 14 17 10.3909 -3.2434 2.7386 15 6 8.6188 -5.2668 3.0461 16 6 7.4719 -5.9678 2.7308 17 6 6.6459 -5.5217 1.7071 18 8 5.5144 -6.2059 1.3994 19 6 5.3094 -7.3718 2.0445 20 1 5.9862 -7.6823 2.8268 21 6 4.2299 -8.1723 1.7037 22 7 3.4053 -7.7939 0.7511 23 14 3.9456 -9.7874 2.5981 24 1 3.7535 -9.5238 4.0468 25 1 2.7342 -10.4496 2.0511 26 1 5.1226 -10.6725 2.4078 27 6 4.1805 -2.4757 -0.6109 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6959 -2.0072 -0.0005 32 1 4.4943 -0.1449 1.7337 33 1 3.4312 -1.5291 2.1433 34 1 5.6197 -2.5211 2.3629 35 1 6.2719 -1.5861 0.9782 36 1 5.7310 -4.7477 -0.6929 37 1 6.6556 -3.2289 -0.7728 38 1 8.3899 -2.7873 0.7650 39 1 9.2588 -5.6105 3.8453 40 1 7.2149 -6.8598 3.2828 41 1 2.6498 -8.3537 0.5129 42 1 4.8326 -2.2520 -1.4552 43 1 3.3510 -3.1022 -0.9384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817282908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:54 Heat of formation + Delta-G solvation = -39.267494 kcal Electronic energy + Delta-G solvation = -26993.830293 eV Core-core repulsion = 23065.519722 eV Total energy + Delta-G solvation = -3928.310571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.04568 -39.39770 -38.10790 -36.80770 -35.59758 -34.44150 -32.43997 -32.08965 -30.23144 -29.59575 -28.76363 -27.54879 -25.48744 -24.90279 -21.79016 -21.61615 -21.07824 -20.47189 -20.17529 -18.11611 -17.16269 -16.87316 -16.44359 -15.63522 -15.45575 -15.12619 -15.05046 -14.67882 -14.40818 -13.96179 -13.66510 -13.60764 -13.49469 -12.99065 -12.91010 -12.75530 -12.51853 -12.38327 -12.09733 -11.91845 -11.78222 -11.71320 -11.54772 -11.26410 -11.15072 -10.92466 -10.84409 -10.72847 -10.55106 -10.41161 -10.32678 -9.91827 -9.44369 -9.07810 -8.89400 -8.36267 -7.96861 -7.25834 -6.55361 -4.12326 1.91054 2.07017 2.58191 2.79992 3.07596 3.08142 3.10632 3.20192 3.87872 4.15952 4.48993 4.65359 4.80168 4.88773 4.99623 5.06674 5.09499 5.21391 5.25783 5.33303 5.42497 5.48571 5.51523 5.61815 5.64419 5.77039 5.85199 5.92974 6.02176 6.08315 6.18480 6.20615 6.34981 6.38885 6.54003 6.61634 6.84344 6.85807 7.09755 7.19160 7.25248 7.41535 7.50848 7.53284 7.87363 8.17970 8.89305 9.57196 10.60601 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.007205 B = 0.004256 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3885.513459 B = 6577.137428 C = 9954.262049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.555 6.555 4 N -0.717 5.717 5 C 0.135 3.865 6 H 0.092 0.908 7 C -0.132 4.132 8 C 0.042 3.958 9 N -0.493 5.493 10 C 0.111 3.889 11 C -0.155 4.155 12 C -0.056 4.056 13 C -0.129 4.129 14 Cl -0.108 7.108 15 C -0.057 4.057 16 C -0.229 4.229 17 C 0.175 3.825 18 O -0.147 6.147 19 C -0.395 4.395 20 H 0.091 0.909 21 C 0.046 3.954 22 N -0.850 5.850 23 Si 0.938 3.062 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.031 3.969 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.406 0.594 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.032 0.968 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.271 0.729 42 H 0.051 0.949 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 8.611 -1.058 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.297 3.703 3 O -0.434 6.434 4 N -0.370 5.370 5 C 0.029 3.971 6 H 0.110 0.890 7 C -0.171 4.171 8 C -0.086 4.086 9 N -0.217 5.217 10 C -0.016 4.016 11 C -0.157 4.157 12 C -0.075 4.075 13 C -0.156 4.156 14 Cl -0.080 7.080 15 C -0.076 4.076 16 C -0.248 4.248 17 C 0.118 3.882 18 O -0.048 6.048 19 C -0.471 4.471 20 H 0.108 0.892 21 C -0.160 4.160 22 N -0.483 5.483 23 Si 0.763 3.237 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.098 4.098 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.241 0.759 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.050 0.950 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.901 8.974 -1.072 9.083 hybrid contribution 0.388 -0.710 0.214 0.837 sum -0.513 8.264 -0.858 8.325 Atomic orbital electron populations 1.21850 0.91872 1.04344 1.05054 1.20820 0.90588 0.83584 0.75322 1.90705 1.70836 1.31522 1.50303 1.46288 1.07091 1.08923 1.74665 1.21840 0.79848 0.98371 0.97014 0.89017 1.22910 0.98307 0.99526 0.96393 1.23163 0.95373 0.91439 0.98660 1.64929 1.21192 1.22089 1.13511 1.20874 0.89249 0.97937 0.93570 1.18606 0.97527 0.97610 1.01930 1.20388 0.93170 0.98319 0.95654 1.20209 0.92306 0.98855 1.04227 1.98278 1.39253 1.76539 1.93949 1.20628 0.96222 0.92930 0.97825 1.21106 0.97148 1.03923 1.02647 1.19103 0.86347 0.91109 0.91628 1.84040 1.31611 1.31603 1.57555 1.21316 1.12695 0.95058 1.18016 0.89152 1.25252 0.95089 0.99142 0.96555 1.70033 1.13651 1.37420 1.27186 0.85821 0.78395 0.80214 0.79305 1.19447 1.20234 1.19457 1.23127 0.99170 0.93446 0.94058 0.90410 0.88873 0.88928 0.75854 0.90991 0.90345 0.89709 0.93970 0.89166 0.94974 0.86473 0.86548 0.84732 0.91916 0.93118 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.39 36.01 0.37 -0.96 16 2 C 0.51 6.16 7.94 -10.99 -0.09 6.08 16 3 O -0.56 -9.03 16.75 5.55 0.09 -8.94 16 4 N -0.72 -8.24 5.06 -52.49 -0.27 -8.50 16 5 C 0.13 1.75 3.34 -66.57 -0.22 1.52 16 6 H 0.09 1.25 7.56 -51.93 -0.39 0.86 16 7 C -0.13 -1.82 6.78 -24.87 -0.17 -1.98 16 8 C 0.04 0.63 5.22 -1.89 -0.01 0.62 16 9 N -0.49 -8.25 5.39 -231.89 -1.25 -9.50 16 10 C 0.11 1.94 4.82 -4.98 -0.02 1.92 16 11 C -0.15 -2.94 4.33 -104.44 -0.45 -3.39 16 12 C -0.06 -0.95 8.74 -39.57 -0.35 -1.30 16 13 C -0.13 -2.21 6.32 -39.46 -0.25 -2.46 16 14 Cl -0.11 -1.64 28.95 -51.86 -1.50 -3.14 16 15 C -0.06 -1.01 9.82 -39.58 -0.39 -1.40 16 16 C -0.23 -4.62 9.17 -39.40 -0.36 -4.98 16 17 C 0.17 3.84 6.62 -39.11 -0.26 3.58 16 18 O -0.15 -3.79 9.00 0.03 0.00 -3.79 16 19 C -0.39 -10.19 9.49 30.88 0.29 -9.90 16 20 H 0.09 2.17 5.20 -52.49 -0.27 1.89 16 21 C 0.05 1.17 5.49 -17.52 -0.10 1.07 16 22 N -0.85 -23.02 13.67 55.48 0.76 -22.26 16 23 Si 0.94 19.30 29.55 -169.99 -5.02 14.28 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 27 C 0.03 0.42 6.46 -2.75 -0.02 0.40 16 28 H 0.08 0.46 7.91 -51.93 -0.41 0.05 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.41 4.01 8.20 -40.82 -0.33 3.68 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 34 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 35 H 0.04 0.60 7.82 -51.93 -0.41 0.20 16 36 H 0.09 1.78 7.87 -51.93 -0.41 1.37 16 37 H 0.03 0.49 7.67 -51.93 -0.40 0.09 16 38 H 0.12 1.77 8.04 -52.48 -0.42 1.35 16 39 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.14 2.70 5.64 -52.49 -0.30 2.41 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 42 H 0.05 0.65 7.57 -51.93 -0.39 0.25 16 43 H 0.09 1.20 7.66 -51.93 -0.40 0.80 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -29.76 372.50 -9.38 -39.14 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.79 Total: 8.29 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -2.01 Total: -11.18 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.76 Total: -40.27 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -1.50 Total: -3.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.76 -9.38 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817282908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.127 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds