Wall clock time and date at job start Tue Mar 31 2020 20:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99661 * 2 1 4 4 N 1.34772 * 119.99921 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99928 * 180.02562 * 4 2 1 6 6 H 1.09001 * 110.35086 * 327.13952 * 5 4 2 7 7 C 1.54595 * 110.31281 * 89.28070 * 5 4 2 8 8 C 1.54938 * 102.92554 * 140.87520 * 7 5 4 9 9 N 1.48537 * 103.22225 * 322.58424 * 8 7 5 10 10 C 1.46901 * 110.99782 * 159.72054 * 9 8 7 11 11 C 1.50700 * 109.47273 * 52.60429 * 10 9 8 12 12 C 1.38107 * 120.03015 * 260.00381 * 11 10 9 13 13 C 1.38389 * 120.05919 * 179.97438 * 12 11 10 14 14 Cl 1.73597 * 119.94480 * 180.02562 * 13 12 11 15 15 C 1.38430 * 120.10716 * 0.02562 * 13 12 11 16 16 C 1.38063 * 120.05763 * 359.97438 * 15 13 12 17 17 C 1.38849 * 120.02562 * 79.72332 * 11 10 9 18 18 O 1.35768 * 120.06123 * 359.97438 * 17 11 10 19 19 C 1.34819 * 117.00534 * 174.14543 * 18 17 11 20 20 H 1.07998 * 119.99969 * 5.06341 * 19 18 17 21 21 C 1.38647 * 120.00194 * 185.06376 * 19 18 17 22 22 N 1.31556 * 119.99937 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00098 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47282 * 59.99960 * 23 21 19 25 25 H 1.48500 * 109.47176 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47242 * 299.99868 * 23 21 19 27 27 C 1.47904 * 105.82229 * 39.20835 * 9 8 7 28 28 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47104 * 299.99969 * 1 2 3 30 30 H 1.08997 * 109.47536 * 59.99425 * 1 2 3 31 31 H 0.97001 * 120.00192 * 359.97438 * 4 2 1 32 32 H 1.09003 * 110.72117 * 259.23326 * 7 5 4 33 33 H 1.09004 * 110.72507 * 22.33306 * 7 5 4 34 34 H 1.08997 * 110.66905 * 204.15421 * 8 7 5 35 35 H 1.08994 * 110.66673 * 81.01501 * 8 7 5 36 36 H 1.08996 * 109.47212 * 172.60780 * 10 9 8 37 37 H 1.09004 * 109.47127 * 292.60400 * 10 9 8 38 38 H 1.08009 * 119.97078 * 359.97438 * 12 11 10 39 39 H 1.08005 * 119.97015 * 180.02562 * 15 13 12 40 40 H 1.07999 * 120.02702 * 180.02562 * 16 15 13 41 41 H 0.97002 * 120.00389 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.91753 * 94.01391 * 27 9 8 43 43 H 1.08994 * 109.92082 * 215.11580 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0251 -0.3084 -0.5537 7 6 4.1820 -1.1499 1.4500 8 6 5.4010 -2.1038 1.3801 9 7 4.9470 -3.1675 0.4481 10 6 6.0910 -3.8938 -0.1191 11 6 6.9820 -4.3774 0.9960 12 6 8.1303 -3.6797 1.3152 13 6 8.9486 -4.1230 2.3394 14 17 10.3909 -3.2434 2.7386 15 6 8.6188 -5.2668 3.0461 16 6 7.4719 -5.9678 2.7308 17 6 6.6459 -5.5217 1.7071 18 8 5.5144 -6.2059 1.3994 19 6 5.3094 -7.3718 2.0445 20 1 5.9862 -7.6823 2.8268 21 6 4.2299 -8.1723 1.7037 22 7 3.4053 -7.7939 0.7511 23 14 3.9456 -9.7874 2.5981 24 1 3.7535 -9.5238 4.0468 25 1 2.7342 -10.4496 2.0511 26 1 5.1226 -10.6725 2.4078 27 6 4.1805 -2.4757 -0.6109 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6959 -2.0072 -0.0005 32 1 4.4943 -0.1449 1.7337 33 1 3.4312 -1.5291 2.1433 34 1 5.6197 -2.5211 2.3629 35 1 6.2719 -1.5861 0.9782 36 1 5.7310 -4.7477 -0.6929 37 1 6.6556 -3.2289 -0.7728 38 1 8.3899 -2.7873 0.7650 39 1 9.2588 -5.6105 3.8453 40 1 7.2149 -6.8598 3.2828 41 1 2.6498 -8.3537 0.5129 42 1 4.8326 -2.2520 -1.4552 43 1 3.3510 -3.1022 -0.9384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817282908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:54 Heat of formation + Delta-G solvation = -58.997115 kcal Electronic energy + Delta-G solvation = -26994.685833 eV Core-core repulsion = 23065.519722 eV Total energy + Delta-G solvation = -3929.166111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28340 -40.76588 -39.36569 -38.36189 -37.00191 -35.60507 -34.23418 -33.39175 -31.39078 -30.67167 -30.26519 -28.65508 -27.31255 -26.25791 -23.39426 -22.94460 -22.13757 -21.61886 -21.45224 -19.84771 -18.69331 -17.99656 -17.52889 -17.04433 -16.75154 -16.57793 -16.22137 -16.13943 -15.76958 -15.39013 -15.24559 -14.96452 -14.68738 -14.43036 -14.17531 -13.88729 -13.68281 -13.57301 -13.34807 -13.16528 -13.07589 -12.97705 -12.75419 -12.69129 -12.53564 -12.39111 -12.22186 -12.12194 -11.91131 -11.82833 -11.76988 -11.12229 -10.94042 -10.69820 -10.12388 -9.83143 -9.23411 -8.86301 -8.40913 -6.06148 0.40553 0.53293 1.37130 1.39907 1.47768 1.52950 1.63503 2.20380 2.27821 2.67915 3.07382 3.27529 3.47945 3.52457 3.70237 3.91538 3.98064 3.98619 4.10908 4.24057 4.29290 4.35730 4.42575 4.50866 4.55735 4.65215 4.68731 4.71339 4.78541 4.87014 4.88805 4.99057 5.06004 5.10666 5.12711 5.16283 5.37982 5.46212 5.51851 5.62527 5.95430 6.01399 6.04001 6.13645 6.57688 7.03154 7.24349 7.81518 8.79298 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.007205 B = 0.004256 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3885.513459 B = 6577.137428 C = 9954.262049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.600 6.600 4 N -0.713 5.713 5 C 0.142 3.858 6 H 0.090 0.910 7 C -0.125 4.125 8 C 0.048 3.952 9 N -0.519 5.519 10 C 0.116 3.884 11 C -0.152 4.152 12 C -0.052 4.052 13 C -0.116 4.116 14 Cl -0.079 7.079 15 C -0.057 4.057 16 C -0.238 4.238 17 C 0.146 3.854 18 O -0.191 6.191 19 C -0.416 4.416 20 H 0.098 0.902 21 C -0.009 4.009 22 N -0.902 5.902 23 Si 1.007 2.993 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.261 1.261 27 C 0.035 3.965 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.414 0.586 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.271 0.729 42 H 0.065 0.935 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 9.641 -0.525 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.482 6.482 4 N -0.365 5.365 5 C 0.036 3.964 6 H 0.108 0.892 7 C -0.164 4.164 8 C -0.080 4.080 9 N -0.244 5.244 10 C -0.011 4.011 11 C -0.154 4.154 12 C -0.071 4.071 13 C -0.143 4.143 14 Cl -0.051 7.051 15 C -0.076 4.076 16 C -0.257 4.257 17 C 0.092 3.908 18 O -0.095 6.095 19 C -0.492 4.492 20 H 0.115 0.885 21 C -0.209 4.209 22 N -0.538 5.538 23 Si 0.827 3.173 24 H -0.186 1.186 25 H -0.198 1.198 26 H -0.185 1.185 27 C -0.093 4.093 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.251 0.749 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.283 10.013 -0.523 10.031 hybrid contribution 0.325 -0.797 0.086 0.865 sum 0.608 9.216 -0.437 9.246 Atomic orbital electron populations 1.21877 0.88305 1.06129 1.06025 1.21585 0.92268 0.82705 0.73924 1.90681 1.72079 1.32972 1.52459 1.46292 1.06581 1.09482 1.74124 1.21675 0.80838 0.97628 0.96251 0.89189 1.22828 0.97516 0.99364 0.96707 1.23067 0.96502 0.91138 0.97258 1.64817 1.21318 1.23369 1.14877 1.20751 0.89606 0.97543 0.93182 1.18898 0.98164 0.96661 1.01652 1.20660 0.92059 0.98772 0.95601 1.20437 0.92717 0.98182 1.02964 1.98299 1.37337 1.75719 1.93701 1.20868 0.95535 0.92785 0.98367 1.21204 0.97941 1.04218 1.02376 1.19633 0.86366 0.92006 0.92771 1.84029 1.33832 1.32388 1.59222 1.21727 1.13251 0.95730 1.18500 0.88473 1.26327 0.94666 1.02532 0.97362 1.70165 1.14801 1.39200 1.29646 0.84806 0.78471 0.75777 0.78217 1.18582 1.19797 1.18532 1.23103 0.98974 0.93422 0.93774 0.88270 0.88008 0.87671 0.74875 0.90252 0.91366 0.91927 0.92491 0.92282 0.92186 0.83661 0.83916 0.85316 0.91970 0.91684 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.39 71.24 0.74 -1.50 16 2 C 0.51 11.74 7.94 87.66 0.70 12.44 16 3 O -0.60 -19.25 16.75 -3.04 -0.05 -19.30 16 4 N -0.71 -15.86 5.06 -438.37 -2.22 -18.07 16 5 C 0.14 3.58 3.34 45.87 0.15 3.74 16 6 H 0.09 2.36 7.56 -2.39 -0.02 2.34 16 7 C -0.12 -3.37 6.78 31.80 0.22 -3.15 16 8 C 0.05 1.43 5.22 86.65 0.45 1.89 16 9 N -0.52 -17.49 5.39 -887.56 -4.78 -22.27 16 10 C 0.12 4.09 4.82 85.56 0.41 4.50 16 11 C -0.15 -5.74 4.33 -19.75 -0.09 -5.82 16 12 C -0.05 -1.65 8.74 22.27 0.19 -1.45 16 13 C -0.12 -3.66 6.32 22.35 0.14 -3.52 16 14 Cl -0.08 -2.10 28.95 -2.72 -0.08 -2.18 16 15 C -0.06 -1.90 9.82 22.27 0.22 -1.69 16 16 C -0.24 -9.65 9.17 22.39 0.21 -9.44 16 17 C 0.15 6.57 6.62 22.58 0.15 6.72 16 18 O -0.19 -10.34 9.00 -22.83 -0.21 -10.55 16 19 C -0.42 -22.44 9.49 67.92 0.64 -21.80 16 20 H 0.10 4.85 5.20 -2.91 -0.02 4.83 16 21 C -0.01 -0.48 5.49 84.83 0.47 -0.01 16 22 N -0.90 -51.30 13.67 21.61 0.30 -51.00 16 23 Si 1.01 40.52 29.55 68.60 2.03 42.55 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 26 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 27 C 0.04 0.97 6.46 86.45 0.56 1.52 16 28 H 0.10 0.93 7.91 -2.39 -0.02 0.91 16 29 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.41 7.91 8.20 -92.71 -0.76 7.15 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.97 8.06 -2.38 -0.02 1.95 16 34 H 0.06 2.13 7.90 -2.39 -0.02 2.11 16 35 H 0.06 1.51 7.82 -2.39 -0.02 1.49 16 36 H 0.06 2.44 7.87 -2.39 -0.02 2.43 16 37 H 0.06 1.73 7.67 -2.38 -0.02 1.71 16 38 H 0.15 3.83 8.04 -2.91 -0.02 3.81 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.13 5.29 5.64 -2.91 -0.02 5.27 16 41 H 0.27 14.28 8.31 -92.71 -0.77 13.50 16 42 H 0.06 1.58 7.57 -2.39 -0.02 1.56 16 43 H 0.08 2.29 7.66 -2.39 -0.02 2.28 16 Total: -1.00 -67.57 372.50 0.44 -67.14 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.29 Total: 31.27 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 5.16 Total: -17.58 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -6.70 Total: -91.35 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.26 Total: -29.85 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -67.57 0.44 -67.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817282908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.140 kcal (2) G-P(sol) polarization free energy of solvation -67.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds