Wall clock time and date at job start Tue Mar 31 2020 21:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34229 * 117.00207 * 2 1 4 4 O 1.20821 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99926 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.91064 * 48.75165 * 5 3 2 7 7 C 1.53787 * 113.61150 * 180.02562 * 5 3 2 8 8 C 1.53779 * 87.07963 * 139.98062 * 7 5 3 9 9 H 1.09006 * 113.61280 * 89.11401 * 8 7 5 10 10 N 1.46508 * 113.61245 * 219.93163 * 8 7 5 11 11 C 1.46500 * 119.99823 * 60.00172 * 10 8 7 12 12 C 1.34778 * 119.99781 * 240.00163 * 10 8 7 13 13 O 1.21583 * 120.00059 * 359.97438 * 12 10 8 14 14 N 1.34774 * 119.99681 * 180.02562 * 12 10 8 15 15 C 1.46497 * 119.99897 * 180.02562 * 14 12 10 16 16 H 1.09000 * 109.47427 * 324.99828 * 15 14 12 17 17 C 1.50700 * 109.47199 * 204.99885 * 15 14 12 18 18 H 1.08003 * 119.99858 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00557 * 180.02562 * 17 15 14 20 20 N 1.31520 * 119.99620 * 359.97438 * 19 17 15 21 21 Si 1.86790 * 120.00448 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47305 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47444 * 119.99551 * 21 19 17 24 24 H 1.48507 * 109.47084 * 239.99976 * 21 19 17 25 25 C 1.53005 * 109.47206 * 85.00067 * 15 14 12 26 26 F 1.39900 * 109.47029 * 59.99695 * 25 15 14 27 27 F 1.39896 * 109.47033 * 179.97438 * 25 15 14 28 28 F 1.39898 * 109.46953 * 299.99973 * 25 15 14 29 29 C 1.53779 * 87.08402 * 334.56577 * 8 7 5 30 30 H 1.09002 * 109.46921 * 60.00622 * 1 2 3 31 31 H 1.09002 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47738 * 299.99919 * 1 2 3 33 33 H 1.08997 * 113.61028 * 254.53022 * 7 5 3 34 34 H 1.08998 * 113.61447 * 25.34557 * 7 5 3 35 35 H 1.08996 * 109.47118 * 89.99822 * 11 10 8 36 36 H 1.09001 * 109.46788 * 210.00114 * 11 10 8 37 37 H 1.09002 * 109.46803 * 330.00045 * 11 10 8 38 38 H 0.97004 * 119.99888 * 359.97438 * 14 12 10 39 39 H 0.96996 * 119.99996 * 180.02562 * 20 19 17 40 40 H 1.09002 * 113.61557 * 270.88569 * 29 8 7 41 41 H 1.09004 * 113.61501 * 139.97990 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0249 0.6358 -0.7539 7 6 4.1078 2.7142 0.0011 8 6 5.1806 2.2265 0.9890 9 1 6.0806 1.8479 0.5043 10 7 5.4707 3.1834 2.0598 11 6 4.4066 3.6035 2.9749 12 6 6.7166 3.6771 2.2030 13 8 7.5998 3.3281 1.4439 14 7 6.9836 4.5570 3.1884 15 6 8.3376 5.0942 3.3438 16 1 9.0655 4.3254 3.0844 17 6 8.5472 5.5225 4.7733 18 1 7.7512 5.4066 5.4940 19 6 9.7547 6.0633 5.1611 20 7 10.7239 6.2049 4.2834 21 14 10.0147 6.5936 6.9332 22 1 8.7800 6.3300 7.7150 23 1 11.1445 5.8279 7.5184 24 1 10.3261 8.0450 6.9750 25 6 8.5174 6.2995 2.4187 26 9 7.5832 7.2862 2.7515 27 9 9.8103 6.8128 2.5675 28 9 8.3229 5.9019 1.0916 29 6 4.1906 1.1231 1.3978 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.5111 3.0292 -0.9612 34 1 3.4165 3.4405 0.4286 35 1 4.3780 2.9309 3.8321 36 1 4.6017 4.6199 3.3168 37 1 3.4483 3.5721 2.4564 38 1 6.2789 4.8352 3.7943 39 1 11.5736 6.5850 4.5562 40 1 3.5226 1.4143 2.2085 41 1 4.6609 0.1537 1.5630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932891901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:03 Heat of formation + Delta-G solvation = -216.790746 kcal Electronic energy + Delta-G solvation = -30754.013834 eV Core-core repulsion = 25835.439372 eV Total energy + Delta-G solvation = -4918.574462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.29982 -45.95211 -45.57020 -41.15784 -39.86372 -38.22970 -36.58490 -34.63398 -34.25895 -32.41554 -28.91233 -28.16038 -27.08972 -25.97649 -25.55502 -24.52968 -22.26705 -21.06176 -19.86359 -19.13889 -18.54105 -17.74965 -17.10674 -16.80543 -16.73278 -16.64909 -16.56959 -15.87378 -15.51675 -15.19106 -14.91252 -14.77772 -14.05544 -13.58266 -13.43168 -13.26497 -13.00986 -12.87806 -12.67154 -12.49184 -12.48585 -12.35336 -12.34726 -12.21311 -12.13389 -11.89482 -11.75954 -11.54161 -11.27016 -11.15549 -11.11297 -10.87980 -10.83849 -10.72654 -10.50631 -10.37954 -9.62641 -9.50510 -8.72275 -8.49877 -8.11310 -6.22738 -4.46376 1.90628 2.39490 3.05163 3.18170 3.25854 3.29379 3.68059 4.10938 4.17374 4.21922 4.44604 4.58529 4.64211 4.69615 4.76976 4.80645 4.85323 4.94773 5.15346 5.19360 5.38053 5.43192 5.52273 5.52591 5.62881 5.74439 5.84819 5.87334 5.92136 6.08175 6.14273 6.25050 6.64043 6.91064 7.21525 7.36164 7.47346 7.60233 7.65491 8.49760 8.59519 9.13382 9.24548 10.68923 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.002734 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.554338 B =10238.049645 C =10699.182144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.505 6.505 5 C -0.110 4.110 6 H 0.130 0.870 7 C -0.135 4.135 8 C 0.149 3.851 9 H 0.128 0.872 10 N -0.626 5.626 11 C 0.077 3.923 12 C 0.702 3.298 13 O -0.581 6.581 14 N -0.725 5.725 15 C 0.261 3.739 16 H 0.085 0.915 17 C -0.551 4.551 18 H 0.077 0.923 19 C 0.064 3.936 20 N -0.839 5.839 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.416 3.584 26 F -0.211 7.211 27 F -0.137 7.137 28 F -0.216 7.216 29 C -0.132 4.132 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.395 0.605 39 H 0.267 0.733 40 H 0.091 0.909 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.234 -10.456 -4.871 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.392 6.392 5 C -0.129 4.129 6 H 0.147 0.853 7 C -0.174 4.174 8 C 0.044 3.956 9 H 0.146 0.854 10 N -0.364 5.364 11 C -0.066 4.066 12 C 0.403 3.597 13 O -0.458 6.458 14 N -0.378 5.378 15 C 0.155 3.845 16 H 0.103 0.897 17 C -0.588 4.588 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.472 5.472 21 Si 0.742 3.258 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.359 3.641 26 F -0.193 7.193 27 F -0.119 7.119 28 F -0.198 7.198 29 C -0.171 4.171 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.230 0.770 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.553 -10.296 -5.449 19.432 hybrid contribution -0.560 0.799 0.921 1.342 sum -16.113 -9.497 -4.528 19.244 Atomic orbital electron populations 1.23269 0.76497 1.03664 1.02553 1.86532 1.23314 1.33629 1.84008 1.23634 0.91730 0.81211 0.71838 1.90669 1.66993 1.36441 1.45115 1.22361 0.86991 1.01773 1.01805 0.85264 1.23538 0.98147 0.94049 1.01638 1.22226 0.97464 0.88321 0.87636 0.85389 1.46902 1.08523 1.47450 1.33480 1.21680 0.91233 1.00348 0.93359 1.16009 0.82150 0.79672 0.81835 1.90901 1.44741 1.63821 1.46387 1.45429 1.13616 1.46016 1.32760 1.19619 0.80516 0.89466 0.94934 0.89700 1.20906 1.00412 1.45567 0.91904 0.90509 1.25081 0.95683 0.94777 0.98885 1.70419 1.04015 1.40230 1.32570 0.86159 0.78445 0.78358 0.82847 1.19435 1.20571 1.20592 1.23176 0.74837 0.87183 0.78877 1.92981 1.67402 1.66309 1.92571 1.93400 1.35836 1.88228 1.94395 1.93072 1.95245 1.90928 1.40587 1.23440 0.98188 1.01022 0.94424 0.91936 0.88119 0.91890 0.89746 0.88219 0.92690 0.91043 0.91134 0.77009 0.92184 0.89036 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.33 10.56 -39.26 -0.41 -3.74 16 3 C 0.47 4.96 7.48 36.01 0.27 5.23 16 4 O -0.51 -6.65 15.65 -18.75 -0.29 -6.95 16 5 C -0.11 -0.99 4.26 -90.95 -0.39 -1.37 16 6 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 7 C -0.13 -1.48 6.94 -25.92 -0.18 -1.66 16 8 C 0.15 1.84 4.20 -67.12 -0.28 1.56 16 9 H 0.13 1.75 7.23 -51.93 -0.38 1.37 16 10 N -0.63 -9.36 3.08 -178.73 -0.55 -9.91 16 11 C 0.08 0.89 8.81 59.85 0.53 1.42 16 12 C 0.70 14.07 7.81 -86.92 -0.68 13.40 16 13 O -0.58 -13.76 14.40 5.29 0.08 -13.69 16 14 N -0.72 -14.99 4.85 -59.81 -0.29 -15.28 16 15 C 0.26 6.51 2.21 -69.08 -0.15 6.36 16 16 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 17 C -0.55 -14.00 8.47 -34.44 -0.29 -14.30 16 18 H 0.08 1.85 7.74 -52.48 -0.41 1.44 16 19 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 20 N -0.84 -22.98 9.50 55.43 0.53 -22.46 16 21 Si 0.92 20.02 29.54 -169.99 -5.02 14.99 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 C 0.42 10.77 2.81 37.16 0.10 10.88 16 26 F -0.21 -5.25 16.94 2.25 0.04 -5.22 16 27 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 28 F -0.22 -5.60 15.68 2.25 0.04 -5.57 16 29 C -0.13 -1.22 7.06 -25.92 -0.18 -1.40 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.20 6.22 -51.93 -0.32 0.88 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 37 H 0.07 0.71 6.34 -51.93 -0.33 0.38 16 38 H 0.39 7.10 6.27 -40.82 -0.26 6.85 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.09 0.83 6.69 -51.93 -0.35 0.48 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -32.58 349.95 -5.73 -38.31 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.85 Total: 5.05 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: -0.28 Total: 22.98 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.31 Total: -47.65 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.63 Total: -24.37 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.58 -5.73 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932891901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.482 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds