Wall clock time and date at job start Tue Mar 31 2020 21:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34229 * 117.00207 * 2 1 4 4 O 1.20821 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99926 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.91064 * 48.75165 * 5 3 2 7 7 C 1.53787 * 113.61150 * 180.02562 * 5 3 2 8 8 C 1.53779 * 87.07963 * 139.98062 * 7 5 3 9 9 H 1.09006 * 113.61280 * 89.11401 * 8 7 5 10 10 N 1.46508 * 113.61245 * 219.93163 * 8 7 5 11 11 C 1.46500 * 119.99823 * 60.00172 * 10 8 7 12 12 C 1.34778 * 119.99781 * 240.00163 * 10 8 7 13 13 O 1.21583 * 120.00059 * 359.97438 * 12 10 8 14 14 N 1.34774 * 119.99681 * 180.02562 * 12 10 8 15 15 C 1.46497 * 119.99897 * 180.02562 * 14 12 10 16 16 H 1.09000 * 109.47427 * 324.99828 * 15 14 12 17 17 C 1.50700 * 109.47199 * 204.99885 * 15 14 12 18 18 H 1.08003 * 119.99858 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00557 * 180.02562 * 17 15 14 20 20 N 1.31520 * 119.99620 * 359.97438 * 19 17 15 21 21 Si 1.86790 * 120.00448 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47305 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47444 * 119.99551 * 21 19 17 24 24 H 1.48507 * 109.47084 * 239.99976 * 21 19 17 25 25 C 1.53005 * 109.47206 * 85.00067 * 15 14 12 26 26 F 1.39900 * 109.47029 * 59.99695 * 25 15 14 27 27 F 1.39896 * 109.47033 * 179.97438 * 25 15 14 28 28 F 1.39898 * 109.46953 * 299.99973 * 25 15 14 29 29 C 1.53779 * 87.08402 * 334.56577 * 8 7 5 30 30 H 1.09002 * 109.46921 * 60.00622 * 1 2 3 31 31 H 1.09002 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47738 * 299.99919 * 1 2 3 33 33 H 1.08997 * 113.61028 * 254.53022 * 7 5 3 34 34 H 1.08998 * 113.61447 * 25.34557 * 7 5 3 35 35 H 1.08996 * 109.47118 * 89.99822 * 11 10 8 36 36 H 1.09001 * 109.46788 * 210.00114 * 11 10 8 37 37 H 1.09002 * 109.46803 * 330.00045 * 11 10 8 38 38 H 0.97004 * 119.99888 * 359.97438 * 14 12 10 39 39 H 0.96996 * 119.99996 * 180.02562 * 20 19 17 40 40 H 1.09002 * 113.61557 * 270.88569 * 29 8 7 41 41 H 1.09004 * 113.61501 * 139.97990 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0249 0.6358 -0.7539 7 6 4.1078 2.7142 0.0011 8 6 5.1806 2.2265 0.9890 9 1 6.0806 1.8479 0.5043 10 7 5.4707 3.1834 2.0598 11 6 4.4066 3.6035 2.9749 12 6 6.7166 3.6771 2.2030 13 8 7.5998 3.3281 1.4439 14 7 6.9836 4.5570 3.1884 15 6 8.3376 5.0942 3.3438 16 1 9.0655 4.3254 3.0844 17 6 8.5472 5.5225 4.7733 18 1 7.7512 5.4066 5.4940 19 6 9.7547 6.0633 5.1611 20 7 10.7239 6.2049 4.2834 21 14 10.0147 6.5936 6.9332 22 1 8.7800 6.3300 7.7150 23 1 11.1445 5.8279 7.5184 24 1 10.3261 8.0450 6.9750 25 6 8.5174 6.2995 2.4187 26 9 7.5832 7.2862 2.7515 27 9 9.8103 6.8128 2.5675 28 9 8.3229 5.9019 1.0916 29 6 4.1906 1.1231 1.3978 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.5111 3.0292 -0.9612 34 1 3.4165 3.4405 0.4286 35 1 4.3780 2.9309 3.8321 36 1 4.6017 4.6199 3.3168 37 1 3.4483 3.5721 2.4564 38 1 6.2789 4.8352 3.7943 39 1 11.5736 6.5850 4.5562 40 1 3.5226 1.4143 2.2085 41 1 4.6609 0.1537 1.5630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932891901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:02 Heat of formation + Delta-G solvation = -237.412846 kcal Electronic energy + Delta-G solvation = -30754.908075 eV Core-core repulsion = 25835.439372 eV Total energy + Delta-G solvation = -4919.468703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.39201 -48.02738 -47.70424 -42.04635 -41.10250 -39.35230 -37.42121 -36.45435 -35.55679 -34.23898 -30.29626 -29.29094 -28.05064 -26.83272 -26.64051 -26.40938 -23.79221 -22.43013 -21.19208 -20.14667 -19.91481 -18.93622 -18.76817 -18.66017 -18.51908 -17.92567 -17.59433 -17.37572 -16.90577 -16.51878 -16.25673 -16.12286 -15.31907 -15.00133 -14.93444 -14.57675 -14.43988 -14.36434 -14.29615 -14.26496 -14.14457 -14.00803 -13.86559 -13.56539 -13.25773 -13.15356 -13.04390 -12.90131 -12.70988 -12.64743 -12.37800 -12.17350 -12.15317 -11.79296 -11.65672 -11.53092 -11.34977 -11.14245 -10.68287 -10.13834 -9.48002 -8.19696 -6.50361 1.10477 1.46760 1.48203 1.55063 1.62408 1.87121 2.11068 2.37776 2.57276 2.95784 3.02608 3.28007 3.41701 3.76752 3.80718 3.82280 3.89739 4.07157 4.17603 4.22896 4.32572 4.34378 4.54522 4.59007 4.63158 4.67340 4.73058 4.78774 4.89164 4.93299 4.97820 5.23077 5.36305 5.44969 5.48460 5.66030 5.68168 6.03777 6.54929 6.70695 7.05260 7.20012 7.63078 8.73367 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.002734 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.554338 B =10238.049645 C =10699.182144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.477 3.523 4 O -0.536 6.536 5 C -0.097 4.097 6 H 0.154 0.846 7 C -0.134 4.134 8 C 0.132 3.868 9 H 0.112 0.888 10 N -0.617 5.617 11 C 0.071 3.929 12 C 0.696 3.304 13 O -0.625 6.625 14 N -0.720 5.720 15 C 0.270 3.730 16 H 0.047 0.953 17 C -0.559 4.559 18 H 0.092 0.908 19 C 0.014 3.986 20 N -0.875 5.875 21 Si 0.984 3.016 22 H -0.255 1.255 23 H -0.277 1.277 24 H -0.282 1.282 25 C 0.412 3.588 26 F -0.205 7.205 27 F -0.151 7.151 28 F -0.219 7.219 29 C -0.115 4.115 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.408 0.592 39 H 0.268 0.732 40 H 0.098 0.902 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.291 -11.549 -3.653 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.321 3.679 4 O -0.426 6.426 5 C -0.117 4.117 6 H 0.172 0.828 7 C -0.173 4.173 8 C 0.028 3.972 9 H 0.130 0.870 10 N -0.353 5.353 11 C -0.071 4.071 12 C 0.397 3.603 13 O -0.506 6.506 14 N -0.375 5.375 15 C 0.162 3.838 16 H 0.065 0.935 17 C -0.596 4.596 18 H 0.110 0.890 19 C -0.191 4.191 20 N -0.509 5.509 21 Si 0.808 3.192 22 H -0.178 1.178 23 H -0.203 1.203 24 H -0.208 1.208 25 C 0.356 3.644 26 F -0.186 7.186 27 F -0.132 7.132 28 F -0.201 7.201 29 C -0.154 4.154 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.246 0.754 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.698 -11.429 -4.228 21.487 hybrid contribution -0.012 1.092 0.458 1.185 sum -17.709 -10.336 -3.769 20.849 Atomic orbital electron populations 1.23546 0.74990 1.05667 1.02455 1.86521 1.24810 1.32765 1.83488 1.23777 0.92051 0.81107 0.70945 1.90663 1.67726 1.37483 1.46705 1.22334 0.86425 1.00503 1.02401 0.82823 1.23465 0.97449 0.95362 1.00982 1.22468 0.97755 0.89283 0.87728 0.87041 1.46960 1.07273 1.46898 1.34169 1.21925 0.90768 1.00721 0.93652 1.16224 0.83407 0.79487 0.81178 1.90864 1.46709 1.65184 1.47809 1.45176 1.12446 1.46329 1.33586 1.19187 0.81830 0.88057 0.94708 0.93524 1.21236 1.00935 1.45251 0.92172 0.89048 1.26005 0.95365 0.94680 1.03042 1.70546 1.04513 1.41112 1.34702 0.85100 0.78831 0.77513 0.77796 1.17803 1.20291 1.20792 1.23383 0.74417 0.87667 0.78971 1.92978 1.67043 1.66109 1.92515 1.93373 1.36880 1.88473 1.94480 1.93061 1.95216 1.90969 1.40864 1.23358 0.96867 1.00437 0.94695 0.92105 0.85125 0.91989 0.89995 0.89050 0.90565 0.91238 0.89216 0.75400 0.92180 0.88347 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.79 10.56 -51.41 -0.54 -6.33 16 3 C 0.48 9.02 7.48 71.24 0.53 9.56 16 4 O -0.54 -13.38 15.65 21.98 0.34 -13.03 16 5 C -0.10 -1.54 4.26 -11.01 -0.05 -1.58 16 6 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 7 C -0.13 -2.80 6.94 31.12 0.22 -2.58 16 8 C 0.13 3.14 4.20 45.51 0.19 3.33 16 9 H 0.11 3.06 7.23 -2.38 -0.02 3.04 16 10 N -0.62 -17.91 3.08 -837.64 -2.58 -20.49 16 11 C 0.07 1.50 8.81 127.77 1.13 2.63 16 12 C 0.70 28.13 7.81 179.05 1.40 29.53 16 13 O -0.63 -30.54 14.40 -3.98 -0.06 -30.60 16 14 N -0.72 -29.84 4.85 -461.42 -2.24 -32.08 16 15 C 0.27 13.74 2.21 44.25 0.10 13.83 16 16 H 0.05 2.74 7.58 -2.39 -0.02 2.72 16 17 C -0.56 -28.27 8.47 25.60 0.22 -28.06 16 18 H 0.09 4.25 7.74 -2.91 -0.02 4.23 16 19 C 0.01 0.74 5.20 84.65 0.44 1.18 16 20 N -0.87 -48.66 9.50 21.45 0.20 -48.45 16 21 Si 0.98 40.42 29.54 68.60 2.03 42.45 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.41 21.77 2.81 71.98 0.20 21.97 16 26 F -0.20 -10.20 16.94 44.97 0.76 -9.44 16 27 F -0.15 -8.62 12.91 44.97 0.58 -8.04 16 28 F -0.22 -11.64 15.68 44.97 0.71 -10.94 16 29 C -0.12 -1.84 7.06 31.12 0.22 -1.62 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.10 6.22 -2.39 -0.01 2.08 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.50 6.36 -2.39 -0.02 1.49 16 37 H 0.09 1.58 6.34 -2.39 -0.02 1.56 16 38 H 0.41 14.32 6.27 -92.71 -0.58 13.74 16 39 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.10 1.48 6.69 -2.39 -0.02 1.46 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -71.54 349.95 5.50 -66.03 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.51 Total: 21.26 kcal Atomic # 6 Polarization: 43.88 SS G_CDS: 5.79 Total: 49.67 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -4.62 Total: -101.03 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -0.26 Total: -49.96 kcal Atomic # 9 Polarization: -30.47 SS G_CDS: 2.05 Total: -28.42 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -71.54 5.50 -66.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932891901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.381 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds