Wall clock time and date at job start Tue Mar 31 2020 20:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.88812 * 59.30601 * 6 4 3 8 8 C 1.55160 * 111.00058 * 183.18198 * 6 4 3 9 9 C 1.54329 * 102.94077 * 153.57696 * 8 6 4 10 10 N 1.47027 * 107.26764 * 337.80606 * 9 8 6 11 11 C 1.34775 * 125.64315 * 178.97412 * 10 9 8 12 12 O 1.21595 * 119.99692 * 179.97438 * 11 10 9 13 13 N 1.34769 * 120.00505 * 359.97438 * 11 10 9 14 14 C 1.46507 * 120.00439 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.46861 * 325.00203 * 14 13 11 16 16 C 1.50693 * 109.47127 * 205.00136 * 14 13 11 17 17 H 1.08005 * 120.00553 * 359.97438 * 16 14 13 18 18 C 1.37886 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31511 * 119.99578 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99943 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47163 * 89.99971 * 20 18 16 22 22 H 1.48501 * 109.46965 * 209.99767 * 20 18 16 23 23 H 1.48495 * 109.47245 * 330.00042 * 20 18 16 24 24 C 1.53001 * 109.46748 * 85.00133 * 14 13 11 25 25 F 1.39892 * 109.47075 * 60.00296 * 24 14 13 26 26 F 1.39899 * 109.46776 * 180.02562 * 24 14 13 27 27 F 1.39894 * 109.47062 * 299.99851 * 24 14 13 28 28 C 1.47466 * 108.72425 * 358.97522 * 10 9 8 29 29 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 34 34 H 1.09002 * 110.71572 * 271.93593 * 8 6 4 35 35 H 1.08996 * 110.72290 * 35.03631 * 8 6 4 36 36 H 1.09005 * 109.88224 * 97.21745 * 9 8 6 37 37 H 1.08997 * 109.88399 * 218.23685 * 9 8 6 38 38 H 0.97005 * 119.99933 * 0.02562 * 13 11 10 39 39 H 0.97000 * 119.99199 * 180.02562 * 19 18 16 40 40 H 1.09004 * 110.34957 * 265.25320 * 28 10 9 41 41 H 1.09003 * 110.40654 * 142.91839 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.5885 3.4950 0.8769 8 6 5.4697 2.8986 -0.0787 9 6 5.8159 4.2505 -0.7376 10 7 4.6188 4.7023 -1.4618 11 6 4.5075 5.8531 -2.1545 12 8 3.4647 6.1253 -2.7175 13 7 5.5519 6.7020 -2.2232 14 6 5.4312 7.9527 -2.9767 15 1 4.7987 7.7913 -3.8495 16 6 6.7978 8.4041 -3.4231 17 1 7.6694 7.8183 -3.1706 18 6 6.9358 9.5656 -4.1533 19 7 5.8746 10.2791 -4.4603 20 14 8.6300 10.1256 -4.7061 21 1 8.9325 9.5454 -6.0392 22 1 8.6573 11.6077 -4.7935 23 1 9.6469 9.6686 -3.7252 24 6 4.8053 9.0268 -2.0848 25 9 5.6171 9.2339 -0.9646 26 9 4.6895 10.2209 -2.8045 27 9 3.5366 8.6077 -1.6704 28 6 3.5597 3.6882 -1.3049 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 5.9057 2.8326 0.9182 35 1 5.8031 2.0673 -0.6998 36 1 6.0825 4.9788 0.0285 37 1 6.6459 4.1226 -1.4323 38 1 6.3840 6.4846 -1.7744 39 1 5.9717 11.0960 -4.9743 40 1 3.5645 3.0011 -2.1511 41 1 2.5854 4.1676 -1.2100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932892967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:29 Heat of formation + Delta-G solvation = -268.080118 kcal Electronic energy + Delta-G solvation = -30566.361413 eV Core-core repulsion = 25645.562877 eV Total energy + Delta-G solvation = -4920.798536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.38895 -48.02096 -47.70094 -41.90935 -41.02055 -38.73484 -37.59361 -36.46611 -34.53229 -33.18312 -32.40408 -30.41666 -29.90121 -26.60150 -25.79985 -24.45809 -23.20179 -23.17110 -21.36640 -21.12962 -19.74671 -18.98259 -18.82287 -18.74479 -18.58930 -17.94112 -17.70647 -17.39044 -16.88082 -16.40924 -16.37674 -15.71289 -15.16166 -14.97428 -14.90986 -14.63017 -14.53193 -14.43411 -14.31174 -14.26912 -14.10553 -13.95679 -13.86579 -13.72222 -13.67392 -13.03849 -12.93316 -12.78213 -12.66923 -12.59874 -12.56137 -12.35992 -12.19238 -11.91583 -11.60450 -11.57532 -11.52426 -11.27741 -10.66988 -10.19540 -9.57909 -8.19827 -6.50713 0.98572 1.40138 1.48923 1.49385 1.60800 1.75159 2.07819 2.37696 2.56908 2.95760 3.00142 3.24855 3.40842 3.73476 3.80896 3.89094 4.01324 4.05616 4.07772 4.15009 4.20372 4.22960 4.35988 4.58412 4.68959 4.74637 4.83611 4.86659 4.93081 4.95098 5.09268 5.15446 5.25104 5.42461 5.42999 5.56146 5.66349 6.05354 6.54337 6.62670 7.01504 7.19517 7.57860 8.73055 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.002750 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.818620 B =10178.104898 C =10758.044796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.484 3.516 5 O -0.524 6.524 6 C -0.091 4.091 7 H 0.144 0.856 8 C -0.099 4.099 9 C 0.092 3.908 10 N -0.637 5.637 11 C 0.714 3.286 12 O -0.626 6.626 13 N -0.715 5.715 14 C 0.271 3.729 15 H 0.046 0.954 16 C -0.560 4.560 17 H 0.093 0.907 18 C 0.015 3.985 19 N -0.875 5.875 20 Si 0.984 3.016 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.257 1.257 24 C 0.413 3.587 25 F -0.202 7.202 26 F -0.151 7.151 27 F -0.219 7.219 28 C 0.140 3.860 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.410 0.590 39 H 0.269 0.731 40 H 0.066 0.934 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 -17.567 10.970 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.327 3.673 5 O -0.413 6.413 6 C -0.110 4.110 7 H 0.161 0.839 8 C -0.137 4.137 9 C -0.030 4.030 10 N -0.376 5.376 11 C 0.416 3.584 12 O -0.506 6.506 13 N -0.369 5.369 14 C 0.163 3.837 15 H 0.064 0.936 16 C -0.597 4.597 17 H 0.111 0.889 18 C -0.190 4.190 19 N -0.509 5.509 20 Si 0.807 3.193 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.181 1.181 24 C 0.357 3.643 25 F -0.184 7.184 26 F -0.132 7.132 27 F -0.201 7.201 28 C 0.016 3.984 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.246 0.754 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.958 -17.417 10.430 20.515 hybrid contribution 0.568 0.593 -0.141 0.833 sum -2.391 -16.823 10.288 19.864 Atomic orbital electron populations 1.21843 0.90871 1.04351 1.03597 1.23320 0.96854 0.78958 1.02867 1.86549 1.23942 1.34028 1.83293 1.23304 0.80739 0.91873 0.71397 1.90664 1.60923 1.43497 1.46242 1.22250 0.97953 0.89742 1.01097 0.83874 1.22594 0.90930 0.96117 1.04039 1.22338 0.87561 0.96730 0.96399 1.47441 1.16571 1.18898 1.54696 1.15686 0.83636 0.79712 0.79413 1.90897 1.30116 1.77095 1.52486 1.44974 1.15160 1.20263 1.56523 1.19199 0.98792 0.77846 0.87891 0.93647 1.21205 0.91128 1.10263 1.37112 0.88933 1.26004 1.01996 0.95764 0.95285 1.70539 1.30557 1.15283 1.34482 0.85150 0.78077 0.77104 0.78940 1.19631 1.21051 1.18105 1.23308 0.74801 0.86348 0.79863 1.92979 1.73679 1.95892 1.55872 1.93375 1.95524 1.48519 1.75773 1.93062 1.44765 1.90510 1.91745 1.21850 0.91749 0.89088 0.95664 0.91233 0.88079 0.91766 0.90598 0.91241 0.86297 0.89359 0.89593 0.89857 0.75394 0.92149 0.91543 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 71.98 0.74 -0.79 16 2 C 0.05 0.78 6.19 71.98 0.45 1.23 16 3 O -0.36 -7.00 10.22 -51.36 -0.52 -7.53 16 4 C 0.48 9.72 7.27 71.24 0.52 10.24 16 5 O -0.52 -12.55 15.49 21.96 0.34 -12.21 16 6 C -0.09 -1.61 3.54 -10.15 -0.04 -1.65 16 7 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 8 C -0.10 -1.52 6.06 31.79 0.19 -1.32 16 9 C 0.09 1.80 6.15 86.73 0.53 2.33 16 10 N -0.64 -18.79 3.33 -829.63 -2.76 -21.55 16 11 C 0.71 29.22 8.02 179.06 1.44 30.66 16 12 O -0.63 -31.37 15.17 -4.01 -0.06 -31.43 16 13 N -0.72 -29.45 4.95 -461.42 -2.28 -31.73 16 14 C 0.27 13.69 2.21 44.24 0.10 13.79 16 15 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 16 C -0.56 -28.16 8.47 25.60 0.22 -27.94 16 17 H 0.09 4.25 7.74 -2.91 -0.02 4.23 16 18 C 0.01 0.76 5.20 84.66 0.44 1.20 16 19 N -0.87 -48.50 9.50 21.45 0.20 -48.30 16 20 Si 0.98 40.21 29.54 68.60 2.03 42.24 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 24 C 0.41 21.57 2.81 71.98 0.20 21.77 16 25 F -0.20 -9.87 16.94 44.97 0.76 -9.11 16 26 F -0.15 -8.54 12.91 44.97 0.58 -7.96 16 27 F -0.22 -11.48 15.67 44.97 0.70 -10.78 16 28 C 0.14 3.50 6.37 86.85 0.55 4.05 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.47 7.43 -2.39 -0.02 1.46 16 36 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 14.08 7.52 -92.70 -0.70 13.39 16 39 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 40 H 0.07 1.67 8.03 -2.38 -0.02 1.65 16 41 H 0.08 2.20 8.04 -2.39 -0.02 2.18 16 Total: -1.00 -70.58 355.52 4.71 -65.87 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.38 Total: 18.92 kcal Atomic # 6 Polarization: 48.23 SS G_CDS: 5.34 Total: 53.57 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.84 Total: -101.58 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -0.25 Total: -51.17 kcal Atomic # 9 Polarization: -29.90 SS G_CDS: 2.05 Total: -27.85 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -70.58 4.71 -65.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932892967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.208 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds