Wall clock time and date at job start Tue Mar 31 2020 20:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45197 * 109.47324 * 2 1 4 4 C 1.34222 * 117.00324 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99864 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00374 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.91249 * 56.09763 * 6 4 3 8 8 C 1.55157 * 111.00730 * 180.02562 * 6 4 3 9 9 C 1.54317 * 103.10145 * 153.66386 * 8 6 4 10 10 N 1.47020 * 107.27540 * 337.71967 * 9 8 6 11 11 C 1.34779 * 125.64949 * 178.90410 * 10 9 8 12 12 O 1.21584 * 119.99825 * 180.02562 * 11 10 9 13 13 N 1.34768 * 120.00045 * 0.02562 * 11 10 9 14 14 C 1.46500 * 120.00335 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46877 * 34.99450 * 14 13 11 16 16 C 1.50698 * 109.47729 * 155.00078 * 14 13 11 17 17 H 1.07998 * 120.00216 * 116.84239 * 16 14 13 18 18 C 1.37878 * 119.99784 * 296.84670 * 16 14 13 19 19 N 1.31507 * 120.00285 * 173.86359 * 18 16 14 20 20 Si 1.86806 * 119.99880 * 353.86164 * 18 16 14 21 21 H 1.48500 * 109.47060 * 85.13071 * 20 18 16 22 22 H 1.48503 * 109.46886 * 205.12868 * 20 18 16 23 23 H 1.48495 * 109.47117 * 325.12934 * 20 18 16 24 24 C 1.53007 * 109.46675 * 275.00124 * 14 13 11 25 25 F 1.39897 * 109.47254 * 65.06498 * 24 14 13 26 26 F 1.39907 * 109.46615 * 185.06470 * 24 14 13 27 27 F 1.39895 * 109.47109 * 305.06428 * 24 14 13 28 28 C 1.47421 * 108.70081 * 358.94188 * 10 9 8 29 29 H 1.09004 * 109.46497 * 299.99797 * 1 2 3 30 30 H 1.08995 * 109.46930 * 59.99539 * 1 2 3 31 31 H 1.08997 * 109.47003 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46648 * 239.99732 * 2 1 3 33 33 H 1.08995 * 109.46930 * 120.00461 * 2 1 3 34 34 H 1.08998 * 110.71741 * 35.21112 * 8 6 4 35 35 H 1.09001 * 110.71800 * 272.11925 * 8 6 4 36 36 H 1.09010 * 109.88204 * 97.14015 * 9 8 6 37 37 H 1.09003 * 109.88353 * 218.14355 * 9 8 6 38 38 H 0.97004 * 120.00207 * 359.97438 * 13 11 10 39 39 H 0.96999 * 120.00731 * 180.02562 * 19 18 16 40 40 H 1.08999 * 110.36886 * 142.96630 * 28 10 9 41 41 H 1.09009 * 110.36752 * 265.28849 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 -0.0012 7 1 3.5451 3.5142 0.8439 8 6 5.4719 2.8977 -0.0024 9 6 5.8555 4.2352 -0.6696 10 7 4.6995 4.6737 -1.4651 11 6 4.6272 5.8107 -2.1851 12 8 3.6160 6.0731 -2.8071 13 7 5.6757 6.6568 -2.2156 14 6 5.5970 7.8930 -2.9977 15 1 4.5799 8.2830 -2.9595 16 6 6.5477 8.9119 -2.4241 17 1 7.3739 9.2740 -3.0179 18 6 6.3627 9.3818 -1.1411 19 7 7.2572 10.1775 -0.5969 20 14 4.8413 8.8882 -0.1760 21 1 5.0804 7.5835 0.4917 22 1 4.5481 9.9223 0.8487 23 1 3.6861 8.7665 -1.1011 24 6 5.9773 7.6020 -4.4510 25 9 5.0283 6.7453 -5.0188 26 9 6.0144 8.8004 -5.1721 27 9 7.2369 6.9946 -4.4907 28 6 3.6321 3.6641 -1.3439 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.8356 2.0550 -0.5904 35 1 5.8572 2.8502 1.0162 36 1 6.0834 4.9787 0.0944 37 1 6.7209 4.0919 -1.3168 38 1 6.4824 6.4476 -1.7190 39 1 7.1273 10.5078 0.3059 40 1 2.6553 4.1467 -1.3112 41 1 3.6803 2.9594 -2.1743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932892970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:31 Heat of formation + Delta-G solvation = -287.591328 kcal Electronic energy + Delta-G solvation = -30795.084326 eV Core-core repulsion = 25873.439721 eV Total energy + Delta-G solvation = -4921.644605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.88304 -48.38948 -48.36758 -41.94230 -41.10859 -38.81415 -37.62518 -36.64634 -34.49030 -33.30687 -32.47362 -30.70333 -30.17469 -26.94360 -25.86393 -24.45797 -23.21423 -23.08078 -21.38703 -21.12621 -20.18156 -19.33484 -19.13333 -18.98942 -18.58318 -18.34766 -17.90113 -17.50622 -17.06898 -16.49473 -16.25964 -15.75323 -15.35357 -15.26984 -15.01750 -14.86534 -14.83478 -14.69072 -14.63316 -14.56848 -14.50324 -14.36628 -14.08044 -13.84614 -13.69672 -13.56438 -13.00163 -12.94070 -12.77143 -12.58780 -12.51854 -12.38715 -12.07477 -11.95324 -11.87755 -11.63745 -11.54257 -11.40323 -10.97273 -10.30720 -9.64943 -8.52870 -6.70533 0.95022 1.22800 1.34299 1.37202 1.47080 1.67402 1.88935 2.15329 2.23910 2.70555 3.03580 3.17765 3.21860 3.35505 3.38962 3.61598 3.71492 3.99435 4.02713 4.06337 4.11102 4.17704 4.34682 4.45123 4.56440 4.65536 4.70411 4.83752 4.86782 4.91892 4.94389 5.04582 5.13664 5.20636 5.39239 5.40941 5.83527 6.01915 6.43300 6.60446 6.92175 7.00176 7.46988 8.59284 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.003422 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.866000 B = 8181.067013 C = 8882.920709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.485 3.515 5 O -0.524 6.524 6 C -0.093 4.093 7 H 0.142 0.858 8 C -0.100 4.100 9 C 0.089 3.911 10 N -0.640 5.640 11 C 0.708 3.292 12 O -0.618 6.618 13 N -0.725 5.725 14 C 0.229 3.771 15 H 0.077 0.923 16 C -0.540 4.540 17 H 0.066 0.934 18 C 0.066 3.934 19 N -0.898 5.898 20 Si 0.930 3.070 21 H -0.248 1.248 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.444 3.556 25 F -0.191 7.191 26 F -0.186 7.186 27 F -0.186 7.186 28 C 0.140 3.860 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.407 0.593 39 H 0.280 0.720 40 H 0.084 0.916 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -18.728 5.729 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.328 3.672 5 O -0.413 6.413 6 C -0.113 4.113 7 H 0.159 0.841 8 C -0.138 4.138 9 C -0.033 4.033 10 N -0.379 5.379 11 C 0.411 3.589 12 O -0.499 6.499 13 N -0.382 5.382 14 C 0.124 3.876 15 H 0.094 0.906 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.755 3.245 21 H -0.172 1.172 22 H -0.209 1.209 23 H -0.200 1.200 24 C 0.388 3.612 25 F -0.173 7.173 26 F -0.168 7.168 27 F -0.167 7.167 28 C 0.017 3.983 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.245 0.755 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.555 -18.677 5.357 21.230 hybrid contribution 0.044 -0.065 0.165 0.183 sum -8.511 -18.742 5.522 21.312 Atomic orbital electron populations 1.21841 0.90778 1.04361 1.03629 1.23328 0.96905 0.78930 1.02867 1.86539 1.23813 1.34051 1.83292 1.23231 0.80778 0.91749 0.71433 1.90665 1.60952 1.43483 1.46192 1.22325 0.97957 0.90140 1.00860 0.84058 1.22584 0.90984 0.96195 1.03987 1.22332 0.88853 0.96996 0.95109 1.47564 1.18537 1.20276 1.51508 1.15912 0.83841 0.79568 0.79603 1.90879 1.32341 1.76692 1.49978 1.46361 1.17335 1.21747 1.52761 1.19763 1.00599 0.84315 0.82933 0.90579 1.20731 1.13375 1.22679 1.01027 0.91576 1.25416 0.97932 0.93229 0.97450 1.69939 1.35110 1.32086 1.16153 0.85982 0.80307 0.79361 0.78881 1.17159 1.20888 1.19969 1.21397 0.74235 0.73453 0.92132 1.93154 1.64982 1.71625 1.87492 1.93102 1.96267 1.46892 1.80506 1.93082 1.42666 1.83786 1.97188 1.21949 0.91660 0.89372 0.95356 0.91240 0.91660 0.88100 0.91212 0.90672 0.89098 0.86535 0.90291 0.89821 0.75513 0.90988 0.89803 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 71.98 0.74 -0.73 16 2 C 0.05 0.77 6.19 71.98 0.45 1.21 16 3 O -0.36 -6.90 10.22 -51.34 -0.52 -7.42 16 4 C 0.48 9.87 7.29 71.24 0.52 10.38 16 5 O -0.52 -12.76 15.46 21.97 0.34 -12.42 16 6 C -0.09 -1.72 3.56 -9.98 -0.04 -1.75 16 7 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 8 C -0.10 -1.68 6.07 31.78 0.19 -1.49 16 9 C 0.09 1.96 6.15 86.73 0.53 2.49 16 10 N -0.64 -19.22 3.33 -828.80 -2.76 -21.97 16 11 C 0.71 28.01 7.88 179.06 1.41 29.42 16 12 O -0.62 -28.70 15.17 -3.98 -0.06 -28.76 16 13 N -0.73 -29.36 3.17 -461.42 -1.46 -30.82 16 14 C 0.23 10.59 1.41 44.25 0.06 10.66 16 15 H 0.08 3.79 6.29 -2.39 -0.02 3.77 16 16 C -0.54 -27.71 8.64 25.60 0.22 -27.49 16 17 H 0.07 3.75 7.92 -2.91 -0.02 3.73 16 18 C 0.07 3.39 5.46 84.66 0.46 3.85 16 19 N -0.90 -48.73 13.96 21.45 0.30 -48.43 16 20 Si 0.93 40.81 26.14 68.60 1.79 42.60 16 21 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.27 -12.82 6.56 99.48 0.65 -12.17 16 24 C 0.44 19.76 2.79 71.98 0.20 19.96 16 25 F -0.19 -8.49 15.83 44.97 0.71 -7.78 16 26 F -0.19 -8.38 16.84 44.97 0.76 -7.62 16 27 F -0.19 -7.96 16.97 44.97 0.76 -7.20 16 28 C 0.14 3.47 6.39 87.02 0.56 4.03 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 34 H 0.09 1.63 7.39 -2.39 -0.02 1.61 16 35 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.41 15.00 7.58 -92.71 -0.70 14.29 16 39 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.08 2.22 8.04 -2.39 -0.02 2.20 16 41 H 0.07 1.71 8.04 -2.38 -0.02 1.69 16 Total: -1.00 -66.09 356.78 5.49 -60.60 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.32 Total: 18.68 kcal Atomic # 6 Polarization: 45.23 SS G_CDS: 5.31 Total: 50.54 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -3.92 Total: -101.23 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.25 Total: -48.61 kcal Atomic # 9 Polarization: -24.83 SS G_CDS: 2.23 Total: -22.60 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.79 Total: 42.60 kcal Total: -66.09 5.49 -60.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932892970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.995 kcal (2) G-P(sol) polarization free energy of solvation -66.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds