Wall clock time and date at job start Tue Mar 31 2020 20:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 H 1.08989 * 110.88589 * 297.57338 * 6 4 3 8 8 C 1.55156 * 111.00156 * 173.65333 * 6 4 3 9 9 C 1.54332 * 102.94185 * 206.42408 * 8 6 4 10 10 N 1.47022 * 107.26629 * 22.19290 * 9 8 6 11 11 C 1.34784 * 125.64367 * 181.02499 * 10 9 8 12 12 O 1.21586 * 119.99622 * 180.02562 * 11 10 9 13 13 N 1.34780 * 120.00103 * 0.04115 * 11 10 9 14 14 C 1.46497 * 119.99775 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47682 * 325.00201 * 14 13 11 16 16 C 1.50699 * 109.47148 * 204.99904 * 14 13 11 17 17 H 1.08004 * 120.00024 * 0.02562 * 16 14 13 18 18 C 1.37874 * 120.00130 * 180.02562 * 16 14 13 19 19 N 1.31518 * 120.00177 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00083 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47125 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47082 * 120.00195 * 20 18 16 23 23 H 1.48508 * 109.47556 * 240.00250 * 20 18 16 24 24 C 1.52999 * 109.46838 * 85.00343 * 14 13 11 25 25 F 1.39899 * 109.47411 * 59.99717 * 24 14 13 26 26 F 1.39902 * 109.47322 * 179.97438 * 24 14 13 27 27 F 1.39898 * 109.47202 * 299.99680 * 24 14 13 28 28 C 1.47418 * 108.70698 * 1.06001 * 10 9 8 29 29 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 34 34 H 1.08999 * 110.72297 * 324.78369 * 8 6 4 35 35 H 1.09000 * 110.72506 * 88.06113 * 8 6 4 36 36 H 1.08998 * 109.87948 * 262.77726 * 9 8 6 37 37 H 1.08998 * 109.88389 * 141.60858 * 9 8 6 38 38 H 0.96998 * 119.99767 * 0.02562 * 13 11 10 39 39 H 0.96993 * 119.99803 * 179.97438 * 19 18 16 40 40 H 1.09006 * 110.36729 * 217.03743 * 28 10 9 41 41 H 1.09005 * 110.46060 * 94.76112 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.6339 3.4770 -0.9014 8 6 5.4635 2.9011 0.1618 9 6 5.7758 4.2665 0.8099 10 7 4.5431 4.7323 1.4617 11 6 4.3967 5.8970 2.1241 12 8 3.3263 6.1802 2.6266 13 7 5.4366 6.7479 2.2291 14 6 5.2773 8.0141 2.9485 15 1 4.2698 8.3982 2.7894 16 6 6.2825 9.0130 2.4360 17 1 6.9710 8.7329 1.6524 18 6 6.3234 10.2845 2.9674 19 7 5.4854 10.6256 3.9220 20 14 7.5699 11.5225 2.3326 21 1 8.3913 10.8955 1.2661 22 1 6.8580 12.7025 1.7792 23 1 8.4510 11.9541 3.4474 24 6 5.5047 7.7831 4.4438 25 9 6.7980 7.2901 4.6481 26 9 5.3532 8.9923 5.1309 27 9 4.5716 6.8557 4.9196 28 6 3.4939 3.7143 1.2716 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 5.7637 2.0848 0.8188 35 1 5.9505 2.8148 -0.8095 36 1 6.0822 4.9789 0.0439 37 1 6.5668 4.1527 1.5511 38 1 6.2903 6.5222 1.8276 39 1 5.5145 11.5200 4.2961 40 1 2.5260 4.1913 1.1173 41 1 3.4532 3.0441 2.1304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932892972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:34 Heat of formation + Delta-G solvation = -268.165887 kcal Electronic energy + Delta-G solvation = -30558.309271 eV Core-core repulsion = 25637.507016 eV Total energy + Delta-G solvation = -4920.802255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.39962 -48.03569 -47.70936 -41.90698 -41.02017 -38.73148 -37.59908 -36.46590 -34.52971 -33.18329 -32.40252 -30.41363 -29.90050 -26.60474 -25.79127 -24.45892 -23.20605 -23.16859 -21.37285 -21.12828 -19.74526 -18.96394 -18.84616 -18.75255 -18.57163 -17.98572 -17.63202 -17.43147 -16.92804 -16.47145 -16.23686 -15.76636 -15.13624 -14.99473 -14.90551 -14.64250 -14.51504 -14.44718 -14.31131 -14.29035 -14.14067 -13.97776 -13.79300 -13.76566 -13.67489 -13.02449 -12.93360 -12.72265 -12.70229 -12.63641 -12.56686 -12.35083 -12.18075 -11.92657 -11.60285 -11.53304 -11.52292 -11.27646 -10.68327 -10.19504 -9.57647 -8.19531 -6.50389 0.99274 1.40964 1.48355 1.49933 1.62350 1.74187 2.08675 2.38063 2.56153 2.95773 3.00388 3.24508 3.41295 3.73280 3.80234 3.89039 4.01348 4.06092 4.07812 4.15114 4.19596 4.23166 4.35947 4.59388 4.69177 4.74498 4.84609 4.86561 4.93138 4.94946 5.09516 5.15479 5.25326 5.42815 5.43139 5.56301 5.66776 6.05600 6.55068 6.62778 7.01681 7.19912 7.58073 8.73547 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.002737 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.078479 B =10226.745420 C =10678.819312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.483 3.517 5 O -0.525 6.525 6 C -0.089 4.089 7 H 0.148 0.852 8 C -0.099 4.099 9 C 0.091 3.909 10 N -0.637 5.637 11 C 0.714 3.286 12 O -0.625 6.625 13 N -0.715 5.715 14 C 0.271 3.729 15 H 0.047 0.953 16 C -0.558 4.558 17 H 0.094 0.906 18 C 0.014 3.986 19 N -0.875 5.875 20 Si 0.985 3.015 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.282 1.282 24 C 0.412 3.588 25 F -0.203 7.203 26 F -0.150 7.150 27 F -0.220 7.220 28 C 0.139 3.861 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.410 0.590 39 H 0.268 0.732 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -17.430 -11.232 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.326 3.674 5 O -0.414 6.414 6 C -0.108 4.108 7 H 0.165 0.835 8 C -0.137 4.137 9 C -0.030 4.030 10 N -0.376 5.376 11 C 0.416 3.584 12 O -0.506 6.506 13 N -0.369 5.369 14 C 0.163 3.837 15 H 0.065 0.935 16 C -0.595 4.595 17 H 0.112 0.888 18 C -0.191 4.191 19 N -0.509 5.509 20 Si 0.808 3.192 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.208 1.208 24 C 0.355 3.645 25 F -0.185 7.185 26 F -0.132 7.132 27 F -0.202 7.202 28 C 0.016 3.984 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.139 0.861 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.246 0.754 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.622 -17.318 -10.663 20.506 hybrid contribution 0.672 0.420 0.513 0.944 sum -1.950 -16.899 -10.150 19.809 Atomic orbital electron populations 1.21841 0.90858 1.04343 1.03609 1.23316 0.96863 0.78987 1.02836 1.86549 1.23947 1.33991 1.83292 1.23343 0.80741 0.91926 0.71375 1.90666 1.60944 1.43528 1.46283 1.22252 0.97611 0.89476 1.01505 0.83471 1.22594 0.91350 0.95836 1.03906 1.22351 0.86489 0.96646 0.97562 1.47435 1.14807 1.17587 1.57785 1.15689 0.83985 0.79784 0.78983 1.90895 1.28107 1.77099 1.54472 1.44973 1.13649 1.19592 1.58703 1.19214 1.00381 0.82143 0.81970 0.93483 1.21237 1.19238 0.95632 1.23398 0.88831 1.26011 0.98308 1.00551 0.94234 1.70547 1.36537 1.19971 1.23870 0.85092 0.77921 0.77791 0.78386 1.17677 1.20366 1.20820 1.23393 0.72261 0.73331 0.95500 1.92980 1.40740 1.88387 1.96428 1.93377 1.95078 1.42315 1.82385 1.93062 1.67221 1.68749 1.91179 1.21843 0.91914 0.88874 0.95790 0.91797 0.88103 0.91173 0.91332 0.90573 0.89704 0.86111 0.89033 0.90409 0.75393 0.92170 0.90006 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 71.98 0.74 -0.80 16 2 C 0.05 0.78 6.19 71.98 0.45 1.23 16 3 O -0.36 -6.98 10.21 -51.36 -0.52 -7.50 16 4 C 0.48 9.69 7.26 71.24 0.52 10.20 16 5 O -0.53 -12.63 15.54 21.96 0.34 -12.28 16 6 C -0.09 -1.55 3.54 -10.15 -0.04 -1.58 16 7 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 8 C -0.10 -1.51 6.03 31.79 0.19 -1.32 16 9 C 0.09 1.79 6.15 86.73 0.53 2.33 16 10 N -0.64 -18.75 3.33 -829.74 -2.76 -21.51 16 11 C 0.71 29.17 8.02 179.05 1.44 30.61 16 12 O -0.63 -31.32 15.17 -3.99 -0.06 -31.38 16 13 N -0.72 -29.39 4.95 -461.42 -2.28 -31.67 16 14 C 0.27 13.68 2.21 44.24 0.10 13.78 16 15 H 0.05 2.75 7.58 -2.39 -0.02 2.73 16 16 C -0.56 -27.91 8.46 25.60 0.22 -27.70 16 17 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 18 C 0.01 0.73 5.20 84.65 0.44 1.17 16 19 N -0.88 -48.46 9.50 21.45 0.20 -48.25 16 20 Si 0.98 40.05 29.54 68.60 2.03 42.07 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 22 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 24 C 0.41 21.65 2.81 71.98 0.20 21.86 16 25 F -0.20 -10.06 16.94 44.97 0.76 -9.30 16 26 F -0.15 -8.56 12.91 44.97 0.58 -7.98 16 27 F -0.22 -11.71 15.67 44.97 0.70 -11.01 16 28 C 0.14 3.48 6.35 86.86 0.55 4.03 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.08 1.02 8.13 -2.39 -0.02 1.00 16 34 H 0.08 1.45 7.50 -2.39 -0.02 1.43 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.41 14.05 7.52 -92.71 -0.70 13.36 16 39 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.08 2.22 8.04 -2.38 -0.02 2.20 16 41 H 0.06 1.61 8.03 -2.38 -0.02 1.59 16 Total: -1.00 -70.88 355.57 4.71 -66.17 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.38 Total: 18.86 kcal Atomic # 6 Polarization: 48.46 SS G_CDS: 5.34 Total: 53.80 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -4.84 Total: -101.44 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.24 Total: -51.17 kcal Atomic # 9 Polarization: -30.33 SS G_CDS: 2.05 Total: -28.29 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.07 kcal Total: -70.88 4.71 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932892972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.000 kcal (2) G-P(sol) polarization free energy of solvation -70.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds