Wall clock time and date at job start Tue Mar 31 2020 20:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46877 * 2 1 4 4 C 1.34231 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99735 * 180.02562 * 4 3 2 7 7 C 1.52995 * 115.55130 * 297.70441 * 6 4 3 8 8 N 1.46495 * 109.47639 * 300.43004 * 7 6 4 9 9 C 1.34776 * 120.00593 * 184.05065 * 8 7 6 10 10 O 1.21586 * 119.99505 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00440 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00099 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47169 * 325.00203 * 12 11 9 14 14 C 1.50699 * 109.47218 * 205.00359 * 12 11 9 15 15 H 1.08003 * 119.99757 * 354.29718 * 14 12 11 16 16 C 1.37877 * 120.00554 * 174.30152 * 14 12 11 17 17 N 1.31519 * 119.99595 * 332.19432 * 16 14 12 18 18 Si 1.86801 * 120.00512 * 152.46753 * 16 14 12 19 19 H 1.48500 * 109.47013 * 179.72640 * 18 16 14 20 20 H 1.48496 * 109.46732 * 299.72621 * 18 16 14 21 21 H 1.48500 * 109.46969 * 59.72344 * 18 16 14 22 22 C 1.52998 * 109.47055 * 85.00202 * 12 11 9 23 23 F 1.39902 * 109.47324 * 185.78181 * 22 12 11 24 24 F 1.39895 * 109.47382 * 305.78597 * 22 12 11 25 25 F 1.39905 * 109.46864 * 65.78588 * 22 12 11 26 26 C 1.53004 * 117.50012 * 83.38004 * 6 4 3 27 27 C 1.53008 * 117.49657 * 152.04053 * 6 4 3 28 28 H 1.09010 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47448 * 299.99604 * 1 2 3 30 30 H 1.09000 * 109.47648 * 60.00193 * 1 2 3 31 31 H 1.09004 * 109.47037 * 240.00536 * 2 1 3 32 32 H 1.08998 * 109.47326 * 120.00514 * 2 1 3 33 33 H 1.09004 * 109.47338 * 180.42205 * 7 6 4 34 34 H 1.09009 * 109.46918 * 60.42847 * 7 6 4 35 35 H 0.97008 * 119.99734 * 4.04653 * 8 7 6 36 36 H 0.97003 * 119.99517 * 0.02562 * 11 9 8 37 37 H 0.97005 * 119.99952 * 355.41520 * 17 16 14 38 38 H 1.08998 * 117.49689 * 214.99751 * 26 6 4 39 39 H 1.08998 * 117.49560 * 0.02562 * 26 6 4 40 40 H 1.08996 * 117.49756 * 359.97438 * 27 6 4 41 41 H 1.09000 * 117.49769 * 144.97637 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 6 3.5802 3.7929 -1.2208 8 7 4.0753 3.1337 -2.4317 9 6 3.9611 3.7458 -3.6270 10 8 3.4466 4.8450 -3.7003 11 7 4.4171 3.1396 -4.7410 12 6 4.2934 3.8052 -6.0401 13 1 3.3657 4.3767 -6.0687 14 6 4.2797 2.7703 -7.1355 15 1 4.4478 1.7303 -6.8979 16 6 4.0528 3.1512 -8.4411 17 7 3.3371 4.2243 -8.6980 18 14 4.7552 2.1389 -9.8451 19 1 4.3657 2.7516 -11.1404 20 1 6.2360 2.1056 -9.7387 21 1 4.2225 0.7546 -9.7721 22 6 5.4802 4.7488 -6.2447 23 9 5.2960 5.4813 -7.4224 24 9 5.5708 5.6264 -5.1590 25 9 6.6591 4.0015 -6.3400 26 6 4.0455 3.6498 1.3495 27 6 5.2981 3.1320 0.6380 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.0501 4.7714 -1.1217 34 1 2.4991 3.9144 -1.2895 35 1 4.4855 2.2566 -2.3733 36 1 4.8272 2.2624 -4.6825 37 1 2.9136 4.7099 -7.9729 38 1 3.8852 4.7278 1.3660 39 1 3.7115 3.1109 2.2361 40 1 5.7876 2.2528 1.0569 41 1 5.9619 3.8691 0.1863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932910643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:01 Heat of formation + Delta-G solvation = -249.014501 kcal Electronic energy + Delta-G solvation = -30606.297613 eV Core-core repulsion = 25686.325824 eV Total energy + Delta-G solvation = -4919.971789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.72611 -46.26868 -46.19100 -41.02802 -39.45897 -37.97757 -36.57101 -34.99053 -33.85069 -32.61778 -31.97681 -28.69515 -26.81889 -24.89851 -24.43200 -22.96030 -22.74982 -21.80116 -20.38660 -20.18940 -18.53775 -17.89322 -17.39910 -17.11721 -17.02359 -16.91586 -16.75178 -16.24341 -15.39703 -15.10496 -14.75477 -14.26522 -14.13052 -13.91925 -13.75693 -13.45159 -13.21163 -13.13511 -12.97207 -12.78282 -12.69870 -12.62355 -12.50357 -12.41468 -12.34556 -12.23147 -11.94150 -11.86015 -11.33316 -11.14602 -11.02427 -10.80672 -10.79383 -10.71711 -10.56525 -10.19710 -9.70298 -9.54345 -8.93478 -8.43291 -8.31986 -6.78270 -4.48033 1.84499 2.27399 2.87904 3.31666 3.38592 3.40119 3.56693 3.64765 4.14515 4.21908 4.27761 4.33072 4.38786 4.47834 4.64153 4.68707 4.75552 4.89160 4.96826 5.20203 5.22565 5.36747 5.48303 5.48770 5.50686 5.58239 5.61686 5.66116 5.70765 5.71958 5.78139 6.16889 6.58165 6.62253 7.05191 7.18622 7.47075 7.54915 8.12245 8.40894 8.52697 9.05490 9.20078 10.57050 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003283 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.175397 B = 8527.117643 C = 9601.924473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.348 6.348 4 C 0.502 3.498 5 O -0.502 6.502 6 C -0.157 4.157 7 C 0.186 3.814 8 N -0.754 5.754 9 C 0.702 3.298 10 O -0.585 6.585 11 N -0.720 5.720 12 C 0.254 3.746 13 H 0.079 0.921 14 C -0.648 4.648 15 H 0.073 0.927 16 C 0.050 3.950 17 N -0.846 5.846 18 Si 1.060 2.940 19 H -0.279 1.279 20 H -0.280 1.280 21 H -0.284 1.284 22 C 0.414 3.586 23 F -0.180 7.180 24 F -0.206 7.206 25 F -0.195 7.195 26 C -0.138 4.138 27 C -0.137 4.137 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.394 0.606 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -5.659 19.047 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.264 6.264 4 C 0.344 3.656 5 O -0.390 6.390 6 C -0.159 4.159 7 C 0.062 3.938 8 N -0.411 5.411 9 C 0.402 3.598 10 O -0.462 6.462 11 N -0.372 5.372 12 C 0.147 3.853 13 H 0.096 0.904 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.164 4.164 17 N -0.474 5.474 18 Si 0.886 3.114 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.210 1.210 22 C 0.358 3.642 23 F -0.161 7.161 24 F -0.187 7.187 25 F -0.177 7.177 26 C -0.176 4.176 27 C -0.174 4.174 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.227 0.773 36 H 0.231 0.769 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.312 -4.943 17.309 18.049 hybrid contribution 0.545 -0.825 1.695 1.962 sum -0.767 -5.767 19.004 19.874 Atomic orbital electron populations 1.21813 0.92359 1.03067 1.03779 1.23090 0.95647 0.79889 1.02647 1.86524 1.23924 1.32546 1.83432 1.22355 0.80754 0.90488 0.71957 1.90680 1.60647 1.42470 1.45188 1.21235 1.03876 0.92404 0.98340 1.20514 1.00251 0.93913 0.79164 1.45055 1.67532 1.22731 1.05768 1.15996 0.79424 0.84139 0.80261 1.90913 1.49998 1.19772 1.85564 1.45092 1.64295 1.22030 1.05786 1.19553 0.91142 0.93116 0.81489 0.90381 1.21559 1.60226 0.94286 0.92217 0.90897 1.25929 0.93016 0.97672 0.99795 1.70757 1.21971 1.17417 1.37265 0.83699 0.76902 0.75252 0.75551 1.20384 1.20639 1.20981 1.23048 0.87186 0.80980 0.72983 1.93139 1.95272 1.78846 1.48871 1.93087 1.96861 1.72358 1.56437 1.93025 1.51794 1.76844 1.95997 1.23140 1.00791 1.01489 0.92149 1.23229 0.89453 1.03836 1.00901 0.90132 0.91476 0.91125 0.90960 0.91276 0.89886 0.90367 0.77282 0.76949 0.91044 0.86619 0.87726 0.87338 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.35 -4.02 10.22 -39.26 -0.40 -4.42 16 4 C 0.50 6.05 6.73 36.01 0.24 6.29 16 5 O -0.50 -7.03 16.37 -18.75 -0.31 -7.34 16 6 C -0.16 -1.61 2.14 -155.66 -0.33 -1.95 16 7 C 0.19 2.37 5.52 -4.05 -0.02 2.35 16 8 N -0.75 -11.50 5.44 -65.23 -0.35 -11.85 16 9 C 0.70 14.13 7.97 -86.92 -0.69 13.44 16 10 O -0.59 -13.87 14.97 5.29 0.08 -13.79 16 11 N -0.72 -15.02 5.03 -59.82 -0.30 -15.32 16 12 C 0.25 6.32 2.01 -69.09 -0.14 6.18 16 13 H 0.08 2.15 6.47 -51.93 -0.34 1.81 16 14 C -0.65 -16.76 8.12 -34.44 -0.28 -17.04 16 15 H 0.07 1.83 7.86 -52.48 -0.41 1.41 16 16 C 0.05 1.33 4.51 -17.82 -0.08 1.25 16 17 N -0.85 -23.89 12.35 55.43 0.68 -23.20 16 18 Si 1.06 23.60 29.99 -169.99 -5.10 18.51 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.41 10.43 2.83 37.16 0.10 10.54 16 23 F -0.18 -4.82 15.01 2.25 0.03 -4.79 16 24 F -0.21 -5.09 15.53 2.25 0.03 -5.06 16 25 F -0.19 -4.75 16.86 2.25 0.04 -4.71 16 26 C -0.14 -1.00 9.95 -26.69 -0.27 -1.27 16 27 C -0.14 -1.16 9.76 -26.68 -0.26 -1.42 16 28 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 33 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.39 5.42 8.16 -40.82 -0.33 5.09 16 36 H 0.40 7.30 8.54 -40.82 -0.35 6.95 16 37 H 0.28 7.99 7.12 -40.82 -0.29 7.70 16 38 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.93 7.94 -51.93 -0.41 0.52 16 41 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -32.41 366.56 -6.33 -38.75 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.15 Total: 9.25 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: -1.11 Total: 18.46 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.03 Total: -50.38 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.63 Total: -25.55 kcal Atomic # 9 Polarization: -14.66 SS G_CDS: 0.11 Total: -14.55 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.10 Total: 18.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.41 -6.33 -38.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932910643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.267 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds