Wall clock time and date at job start Tue Mar 31 2020 20:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46877 * 2 1 4 4 C 1.34231 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99735 * 180.02562 * 4 3 2 7 7 C 1.52995 * 115.55130 * 297.70441 * 6 4 3 8 8 N 1.46495 * 109.47639 * 300.43004 * 7 6 4 9 9 C 1.34776 * 120.00593 * 184.05065 * 8 7 6 10 10 O 1.21586 * 119.99505 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00440 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00099 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47169 * 325.00203 * 12 11 9 14 14 C 1.50699 * 109.47218 * 205.00359 * 12 11 9 15 15 H 1.08003 * 119.99757 * 354.29718 * 14 12 11 16 16 C 1.37877 * 120.00554 * 174.30152 * 14 12 11 17 17 N 1.31519 * 119.99595 * 332.19432 * 16 14 12 18 18 Si 1.86801 * 120.00512 * 152.46753 * 16 14 12 19 19 H 1.48500 * 109.47013 * 179.72640 * 18 16 14 20 20 H 1.48496 * 109.46732 * 299.72621 * 18 16 14 21 21 H 1.48500 * 109.46969 * 59.72344 * 18 16 14 22 22 C 1.52998 * 109.47055 * 85.00202 * 12 11 9 23 23 F 1.39902 * 109.47324 * 185.78181 * 22 12 11 24 24 F 1.39895 * 109.47382 * 305.78597 * 22 12 11 25 25 F 1.39905 * 109.46864 * 65.78588 * 22 12 11 26 26 C 1.53004 * 117.50012 * 83.38004 * 6 4 3 27 27 C 1.53008 * 117.49657 * 152.04053 * 6 4 3 28 28 H 1.09010 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47448 * 299.99604 * 1 2 3 30 30 H 1.09000 * 109.47648 * 60.00193 * 1 2 3 31 31 H 1.09004 * 109.47037 * 240.00536 * 2 1 3 32 32 H 1.08998 * 109.47326 * 120.00514 * 2 1 3 33 33 H 1.09004 * 109.47338 * 180.42205 * 7 6 4 34 34 H 1.09009 * 109.46918 * 60.42847 * 7 6 4 35 35 H 0.97008 * 119.99734 * 4.04653 * 8 7 6 36 36 H 0.97003 * 119.99517 * 0.02562 * 11 9 8 37 37 H 0.97005 * 119.99952 * 355.41520 * 17 16 14 38 38 H 1.08998 * 117.49689 * 214.99751 * 26 6 4 39 39 H 1.08998 * 117.49560 * 0.02562 * 26 6 4 40 40 H 1.08996 * 117.49756 * 359.97438 * 27 6 4 41 41 H 1.09000 * 117.49769 * 144.97637 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 6 3.5802 3.7929 -1.2208 8 7 4.0753 3.1337 -2.4317 9 6 3.9611 3.7458 -3.6270 10 8 3.4466 4.8450 -3.7003 11 7 4.4171 3.1396 -4.7410 12 6 4.2934 3.8052 -6.0401 13 1 3.3657 4.3767 -6.0687 14 6 4.2797 2.7703 -7.1355 15 1 4.4478 1.7303 -6.8979 16 6 4.0528 3.1512 -8.4411 17 7 3.3371 4.2243 -8.6980 18 14 4.7552 2.1389 -9.8451 19 1 4.3657 2.7516 -11.1404 20 1 6.2360 2.1056 -9.7387 21 1 4.2225 0.7546 -9.7721 22 6 5.4802 4.7488 -6.2447 23 9 5.2960 5.4813 -7.4224 24 9 5.5708 5.6264 -5.1590 25 9 6.6591 4.0015 -6.3400 26 6 4.0455 3.6498 1.3495 27 6 5.2981 3.1320 0.6380 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.0501 4.7714 -1.1217 34 1 2.4991 3.9144 -1.2895 35 1 4.4855 2.2566 -2.3733 36 1 4.8272 2.2624 -4.6825 37 1 2.9136 4.7099 -7.9729 38 1 3.8852 4.7278 1.3660 39 1 3.7115 3.1109 2.2361 40 1 5.7876 2.2528 1.0569 41 1 5.9619 3.8691 0.1863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932910643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:00 Heat of formation + Delta-G solvation = -270.186916 kcal Electronic energy + Delta-G solvation = -30607.215718 eV Core-core repulsion = 25686.325824 eV Total energy + Delta-G solvation = -4920.889893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.77143 -48.30392 -48.25001 -41.95475 -40.99449 -38.86139 -37.52876 -36.79622 -35.26744 -34.49905 -32.66119 -30.40601 -28.04880 -26.48937 -25.83200 -23.77947 -23.62951 -23.37071 -22.01418 -21.12401 -20.21312 -19.46173 -19.08719 -18.98438 -18.70457 -18.22279 -17.64509 -17.63506 -16.93324 -16.22862 -15.98271 -15.71409 -15.46981 -15.23094 -15.21269 -15.06651 -14.85857 -14.73826 -14.69717 -14.51678 -14.46987 -14.38384 -14.09973 -13.70075 -13.50223 -13.28138 -12.99978 -12.98946 -12.56580 -12.53588 -12.52578 -11.95807 -11.92471 -11.59703 -11.59129 -11.51072 -11.47524 -11.26244 -10.50305 -10.42798 -9.94605 -8.88427 -6.58311 0.93426 1.43271 1.53171 1.58509 1.62352 1.84107 1.95900 2.26398 2.49140 2.56015 2.86757 3.12227 3.35743 3.44665 3.50948 3.59174 3.60712 3.76742 3.84871 3.95367 4.01173 4.28106 4.45013 4.56548 4.61036 4.64161 4.67959 4.83396 4.87108 4.90254 5.08980 5.11588 5.28109 5.30499 5.34470 5.36786 5.88480 6.06440 6.29358 6.57794 6.96399 7.14999 7.48438 8.45569 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003283 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.175397 B = 8527.117643 C = 9601.924473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.502 3.498 5 O -0.527 6.527 6 C -0.174 4.174 7 C 0.186 3.814 8 N -0.735 5.735 9 C 0.700 3.300 10 O -0.623 6.623 11 N -0.716 5.716 12 C 0.260 3.740 13 H 0.046 0.954 14 C -0.652 4.652 15 H 0.082 0.918 16 C 0.007 3.993 17 N -0.871 5.871 18 Si 1.104 2.896 19 H -0.283 1.283 20 H -0.271 1.271 21 H -0.259 1.259 22 C 0.415 3.585 23 F -0.191 7.191 24 F -0.203 7.203 25 F -0.188 7.188 26 C -0.113 4.113 27 C -0.133 4.133 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.403 0.597 36 H 0.409 0.591 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -6.856 20.393 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.345 3.655 5 O -0.416 6.416 6 C -0.176 4.176 7 C 0.062 3.938 8 N -0.391 5.391 9 C 0.400 3.600 10 O -0.503 6.503 11 N -0.370 5.370 12 C 0.151 3.849 13 H 0.064 0.936 14 C -0.687 4.687 15 H 0.100 0.900 16 C -0.201 4.201 17 N -0.500 5.500 18 Si 0.924 3.076 19 H -0.209 1.209 20 H -0.197 1.197 21 H -0.184 1.184 22 C 0.359 3.641 23 F -0.173 7.173 24 F -0.185 7.185 25 F -0.170 7.170 26 C -0.150 4.150 27 C -0.170 4.170 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.238 0.762 36 H 0.245 0.755 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.714 -6.183 18.723 19.731 hybrid contribution 0.331 -0.459 1.389 1.500 sum -0.382 -6.642 20.112 21.184 Atomic orbital electron populations 1.21829 0.90667 1.04405 1.03575 1.23323 0.97024 0.79032 1.02674 1.86534 1.23804 1.33813 1.83132 1.22669 0.80727 0.90873 0.71182 1.90663 1.61106 1.43376 1.46460 1.21143 1.05842 0.91696 0.98906 1.20624 0.99731 0.94508 0.78895 1.44967 1.66368 1.22801 1.04993 1.16131 0.79013 0.83780 0.81102 1.90886 1.51619 1.21575 1.86239 1.44880 1.64742 1.22451 1.04923 1.19172 0.89709 0.92774 0.83219 0.93618 1.21805 1.59537 0.94864 0.92505 0.89960 1.27278 0.92423 0.97839 1.02571 1.70876 1.23785 1.18785 1.36589 0.83146 0.76770 0.75081 0.72616 1.20859 1.19655 1.18375 1.23003 0.87478 0.80961 0.72643 1.93116 1.95377 1.79180 1.49615 1.93087 1.96870 1.72324 1.56220 1.93030 1.51344 1.76618 1.95957 1.23343 0.98671 1.02440 0.90535 1.23302 0.89117 1.04036 1.00531 0.88041 0.90724 0.92206 0.91852 0.90367 0.89422 0.91199 0.76172 0.75459 0.92683 0.84772 0.86332 0.87377 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.05 0.94 6.19 71.98 0.45 1.39 16 3 O -0.36 -7.94 10.22 -51.43 -0.53 -8.47 16 4 C 0.50 11.55 6.73 71.24 0.48 12.03 16 5 O -0.53 -14.29 16.37 21.96 0.36 -13.93 16 6 C -0.17 -3.29 2.14 -52.92 -0.11 -3.41 16 7 C 0.19 4.55 5.52 86.38 0.48 5.03 16 8 N -0.73 -21.88 5.44 -478.54 -2.60 -24.48 16 9 C 0.70 28.10 7.97 179.06 1.43 29.53 16 10 O -0.62 -29.90 14.97 -3.99 -0.06 -29.96 16 11 N -0.72 -29.74 5.03 -461.43 -2.32 -32.06 16 12 C 0.26 13.04 2.01 44.25 0.09 13.13 16 13 H 0.05 2.62 6.47 -2.39 -0.02 2.60 16 14 C -0.65 -33.47 8.12 25.60 0.21 -33.27 16 15 H 0.08 4.01 7.86 -2.91 -0.02 3.98 16 16 C 0.01 0.38 4.51 84.65 0.38 0.76 16 17 N -0.87 -49.92 12.35 21.45 0.26 -49.65 16 18 Si 1.10 46.46 29.99 68.60 2.06 48.52 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 C 0.42 20.96 2.83 71.98 0.20 21.16 16 23 F -0.19 -10.38 15.01 44.97 0.67 -9.70 16 24 F -0.20 -10.07 15.53 44.97 0.70 -9.38 16 25 F -0.19 -8.97 16.86 44.97 0.76 -8.22 16 26 C -0.11 -1.31 9.95 30.62 0.30 -1.01 16 27 C -0.13 -1.95 9.76 30.62 0.30 -1.65 16 28 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.23 8.13 -2.38 -0.02 1.21 16 32 H 0.08 1.24 8.13 -2.39 -0.02 1.22 16 33 H 0.09 2.10 8.11 -2.38 -0.02 2.08 16 34 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.40 10.68 8.16 -92.70 -0.76 9.92 16 36 H 0.41 14.68 8.54 -92.71 -0.79 13.89 16 37 H 0.26 15.62 7.12 -92.70 -0.66 14.96 16 38 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 1.64 7.94 -2.39 -0.02 1.62 16 41 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -69.77 366.56 3.91 -65.86 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.34 Total: 28.96 kcal Atomic # 6 Polarization: 37.56 SS G_CDS: 4.94 Total: 42.50 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.66 Total: -106.20 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.23 Total: -52.36 kcal Atomic # 9 Polarization: -29.43 SS G_CDS: 2.13 Total: -27.29 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.06 Total: 48.52 kcal Total: -69.77 3.91 -65.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932910643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.322 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds