Wall clock time and date at job start Tue Mar 31 2020 20:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20824 * 119.99683 * 2 1 4 4 O 1.34224 * 120.00029 * 179.97438 * 2 1 3 5 5 C 1.45201 * 116.99813 * 180.02562 * 4 2 1 6 6 C 1.53046 * 109.45901 * 210.00403 * 5 4 2 7 7 C 1.53196 * 109.31090 * 178.62870 * 6 5 4 8 8 N 1.46917 * 108.77797 * 54.63234 * 7 6 5 9 9 C 1.34778 * 120.63445 * 126.36721 * 8 7 6 10 10 O 1.21586 * 119.99761 * 5.01420 * 9 8 7 11 11 N 1.34776 * 120.00678 * 184.73954 * 9 8 7 12 12 C 1.46498 * 120.00450 * 175.14893 * 11 9 8 13 13 H 1.08999 * 109.46718 * 34.99797 * 12 11 9 14 14 C 1.50694 * 109.47085 * 155.00088 * 12 11 9 15 15 H 1.07997 * 120.00515 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99975 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99905 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00261 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46972 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47078 * 119.99996 * 18 16 14 21 21 H 1.48497 * 109.47075 * 240.00069 * 18 16 14 22 22 C 1.53008 * 109.47006 * 275.00133 * 12 11 9 23 23 F 1.39900 * 109.47122 * 59.99737 * 22 12 11 24 24 F 1.39896 * 109.46678 * 180.02562 * 22 12 11 25 25 F 1.39905 * 109.46740 * 299.99864 * 22 12 11 26 26 C 1.46933 * 118.74009 * 306.64198 * 8 7 6 27 27 C 1.52759 * 109.00384 * 53.31184 * 26 8 7 28 28 H 1.09005 * 109.47398 * 270.00376 * 1 2 3 29 29 H 1.08996 * 109.47552 * 30.00825 * 1 2 3 30 30 H 1.09006 * 109.47222 * 150.00545 * 1 2 3 31 31 H 1.08994 * 109.46128 * 329.96899 * 5 4 2 32 32 H 1.09000 * 109.49944 * 58.67205 * 6 5 4 33 33 H 1.09004 * 109.51863 * 298.59063 * 6 5 4 34 34 H 1.08995 * 109.58559 * 294.84193 * 7 6 5 35 35 H 1.09004 * 109.70044 * 174.48811 * 7 6 5 36 36 H 0.97004 * 119.99291 * 355.15128 * 11 9 8 37 37 H 0.97003 * 119.99922 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58711 * 173.14094 * 26 8 7 39 39 H 1.08995 * 109.58427 * 293.57397 * 26 8 7 40 40 H 1.09006 * 109.56237 * 185.55859 * 27 26 8 41 41 H 1.08997 * 109.39385 * 65.51591 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1624 0.0005 5 6 3.6281 -1.0864 0.0011 6 6 4.2030 -2.3078 -0.7201 7 6 5.7314 -2.2070 -0.7475 8 7 6.2187 -2.0333 0.6275 9 6 7.1564 -2.8589 1.1333 10 8 7.6732 -3.6995 0.4229 11 7 7.5253 -2.7491 2.4249 12 6 8.4650 -3.7129 3.0029 13 1 9.1949 -4.0059 2.2482 14 6 9.1766 -3.0817 4.1716 15 1 8.9518 -2.0642 4.4553 16 6 10.1149 -3.8031 4.8789 17 7 10.3884 -5.0424 4.5338 18 14 10.9976 -3.0205 6.3272 19 1 10.5128 -1.6286 6.5089 20 1 10.7216 -3.8048 7.5577 21 1 12.4595 -3.0060 6.0669 22 6 7.6994 -4.9491 3.4791 23 9 7.0387 -5.5351 2.3940 24 9 8.5968 -5.8692 4.0315 25 9 6.7625 -4.5728 4.4476 26 6 5.6600 -0.9463 1.4431 27 6 4.1365 -1.0579 1.4443 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8901 -0.5138 31 1 3.9444 -0.1790 -0.5133 32 1 3.8221 -2.3403 -1.7408 33 1 3.9077 -3.2147 -0.1924 34 1 6.0303 -1.3507 -1.3520 35 1 6.1522 -3.1186 -1.1720 36 1 7.1684 -2.0318 2.9718 37 1 11.0488 -5.5498 5.0311 38 1 6.0317 -1.0278 2.4646 39 1 5.9529 0.0149 1.0209 40 1 3.7081 -0.2007 1.9639 41 1 3.8412 -1.9760 1.9521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932911421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:40 Heat of formation + Delta-G solvation = -247.170874 kcal Electronic energy + Delta-G solvation = -31153.760595 eV Core-core repulsion = 26233.868752 eV Total energy + Delta-G solvation = -4919.891843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.33640 -45.99307 -45.60127 -40.89716 -39.83690 -37.59950 -36.13816 -34.72224 -32.87045 -32.06863 -31.19735 -30.37341 -28.20944 -25.10012 -24.55026 -23.49736 -22.06265 -21.24781 -20.70907 -19.38217 -18.45645 -17.89851 -16.94146 -16.82135 -16.63280 -16.49323 -16.24522 -15.93841 -15.42739 -14.81997 -14.80273 -14.33310 -14.27013 -13.83065 -13.73707 -13.29378 -13.11377 -12.96664 -12.85869 -12.76812 -12.58746 -12.40933 -12.37204 -12.23212 -11.98328 -11.88011 -11.82404 -11.73433 -11.43026 -11.16342 -10.90122 -10.86058 -10.79967 -10.73393 -10.44783 -10.34683 -9.63644 -9.53074 -8.74244 -8.58475 -8.14609 -6.23855 -4.47658 1.93427 2.44075 2.96119 3.17606 3.25215 3.28748 3.69665 4.15929 4.29418 4.38815 4.48395 4.51419 4.61346 4.80100 4.85215 4.90765 4.91628 4.93464 5.13828 5.23332 5.29599 5.43688 5.54058 5.59619 5.65526 5.80444 5.88118 5.88415 5.89926 5.99703 6.22030 6.33845 6.62294 6.85977 7.18222 7.33403 7.49861 7.58297 7.64197 8.48006 8.56722 9.10961 9.22660 10.67737 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.003072 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.405269 B = 9112.003644 C = 9477.921044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.457 3.543 3 O -0.515 6.515 4 O -0.352 6.352 5 C 0.092 3.908 6 C -0.131 4.131 7 C 0.136 3.864 8 N -0.637 5.637 9 C 0.705 3.295 10 O -0.581 6.581 11 N -0.726 5.726 12 C 0.260 3.740 13 H 0.087 0.913 14 C -0.551 4.551 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.416 3.584 23 F -0.218 7.218 24 F -0.137 7.137 25 F -0.210 7.210 26 C 0.118 3.882 27 C -0.151 4.151 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.393 0.607 37 H 0.268 0.732 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.912 8.448 -7.380 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.301 3.699 3 O -0.404 6.404 4 O -0.269 6.269 5 C 0.037 3.963 6 C -0.170 4.170 7 C 0.012 3.988 8 N -0.377 5.377 9 C 0.407 3.593 10 O -0.458 6.458 11 N -0.380 5.380 12 C 0.154 3.846 13 H 0.104 0.896 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.472 5.472 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.205 1.205 22 C 0.359 3.641 23 F -0.200 7.200 24 F -0.118 7.118 25 F -0.192 7.192 26 C -0.006 4.006 27 C -0.189 4.189 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.229 0.771 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.164 7.876 -7.830 18.795 hybrid contribution 0.021 0.533 1.251 1.360 sum -15.142 8.408 -6.579 18.528 Atomic orbital electron populations 1.21621 0.87344 1.05731 1.05793 1.23848 0.92185 0.81891 0.71975 1.90687 1.70894 1.33101 1.45710 1.86583 1.22490 1.34538 1.83291 1.22786 0.75643 1.00478 0.97344 1.22081 0.95893 0.97674 1.01304 1.21328 0.91218 1.03721 0.82489 1.47302 1.42835 1.33198 1.14344 1.15942 0.79611 0.81052 0.82725 1.90900 1.57473 1.38480 1.58920 1.45447 1.49702 1.33560 1.09340 1.19629 0.85811 0.82797 0.96349 0.89559 1.20904 1.23197 1.00688 1.14042 0.90503 1.25079 0.96544 0.94638 0.98135 1.70417 1.29541 1.07897 1.39368 0.86158 0.79187 0.79352 0.81115 1.19424 1.20578 1.20549 1.23204 0.77738 0.88671 0.74451 1.93063 1.83284 1.86915 1.56760 1.93404 1.64522 1.68682 1.85164 1.92983 1.68434 1.91863 1.65945 1.21423 0.91928 0.90661 0.96625 1.22278 0.96528 1.03979 0.96163 0.87780 0.88071 0.88815 0.89472 0.89876 0.90012 0.91713 0.87751 0.77053 0.92167 0.89315 0.91074 0.90240 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.41 36.01 0.37 -0.38 16 2 C 0.46 4.47 8.04 36.01 0.29 4.76 16 3 O -0.52 -6.66 16.32 -18.75 -0.31 -6.97 16 4 O -0.35 -3.71 9.88 -39.24 -0.39 -4.10 16 5 C 0.09 1.00 2.42 -26.69 -0.06 0.93 16 6 C -0.13 -1.40 5.74 -26.61 -0.15 -1.55 16 7 C 0.14 1.72 6.42 -3.71 -0.02 1.70 16 8 N -0.64 -9.68 2.98 -178.77 -0.53 -10.21 16 9 C 0.71 14.22 7.74 -86.92 -0.67 13.55 16 10 O -0.58 -13.87 14.60 5.29 0.08 -13.79 16 11 N -0.73 -15.03 4.90 -59.81 -0.29 -15.32 16 12 C 0.26 6.49 2.23 -69.08 -0.15 6.34 16 13 H 0.09 2.42 7.51 -51.93 -0.39 2.03 16 14 C -0.55 -14.03 8.46 -34.44 -0.29 -14.32 16 15 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 16 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 17 N -0.84 -22.96 9.50 55.43 0.53 -22.44 16 18 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.42 10.70 2.81 37.16 0.10 10.80 16 23 F -0.22 -5.58 15.88 2.25 0.04 -5.55 16 24 F -0.14 -3.79 12.91 2.25 0.03 -3.76 16 25 F -0.21 -5.19 16.94 2.25 0.04 -5.15 16 26 C 0.12 1.42 6.40 -3.93 -0.03 1.40 16 27 C -0.15 -1.68 5.70 -26.83 -0.15 -1.84 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.97 7.16 -51.93 -0.37 0.60 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.50 7.03 -51.93 -0.37 1.13 16 36 H 0.39 7.08 6.00 -40.82 -0.24 6.83 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.09 1.07 5.57 -51.93 -0.29 0.78 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -32.62 348.92 -6.44 -39.07 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.01 Total: 4.97 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: -0.86 Total: 22.98 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.30 Total: -47.96 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.62 Total: -24.86 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 0.10 Total: -14.46 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.62 -6.44 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.103 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds