Wall clock time and date at job start Tue Mar 31 2020 20:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20824 * 119.99683 * 2 1 4 4 O 1.34224 * 120.00029 * 179.97438 * 2 1 3 5 5 C 1.45201 * 116.99813 * 180.02562 * 4 2 1 6 6 C 1.53046 * 109.45901 * 210.00403 * 5 4 2 7 7 C 1.53196 * 109.31090 * 178.62870 * 6 5 4 8 8 N 1.46917 * 108.77797 * 54.63234 * 7 6 5 9 9 C 1.34778 * 120.63445 * 126.36721 * 8 7 6 10 10 O 1.21586 * 119.99761 * 5.01420 * 9 8 7 11 11 N 1.34776 * 120.00678 * 184.73954 * 9 8 7 12 12 C 1.46498 * 120.00450 * 175.14893 * 11 9 8 13 13 H 1.08999 * 109.46718 * 34.99797 * 12 11 9 14 14 C 1.50694 * 109.47085 * 155.00088 * 12 11 9 15 15 H 1.07997 * 120.00515 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99975 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99905 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00261 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46972 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47078 * 119.99996 * 18 16 14 21 21 H 1.48497 * 109.47075 * 240.00069 * 18 16 14 22 22 C 1.53008 * 109.47006 * 275.00133 * 12 11 9 23 23 F 1.39900 * 109.47122 * 59.99737 * 22 12 11 24 24 F 1.39896 * 109.46678 * 180.02562 * 22 12 11 25 25 F 1.39905 * 109.46740 * 299.99864 * 22 12 11 26 26 C 1.46933 * 118.74009 * 306.64198 * 8 7 6 27 27 C 1.52759 * 109.00384 * 53.31184 * 26 8 7 28 28 H 1.09005 * 109.47398 * 270.00376 * 1 2 3 29 29 H 1.08996 * 109.47552 * 30.00825 * 1 2 3 30 30 H 1.09006 * 109.47222 * 150.00545 * 1 2 3 31 31 H 1.08994 * 109.46128 * 329.96899 * 5 4 2 32 32 H 1.09000 * 109.49944 * 58.67205 * 6 5 4 33 33 H 1.09004 * 109.51863 * 298.59063 * 6 5 4 34 34 H 1.08995 * 109.58559 * 294.84193 * 7 6 5 35 35 H 1.09004 * 109.70044 * 174.48811 * 7 6 5 36 36 H 0.97004 * 119.99291 * 355.15128 * 11 9 8 37 37 H 0.97003 * 119.99922 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58711 * 173.14094 * 26 8 7 39 39 H 1.08995 * 109.58427 * 293.57397 * 26 8 7 40 40 H 1.09006 * 109.56237 * 185.55859 * 27 26 8 41 41 H 1.08997 * 109.39385 * 65.51591 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1624 0.0005 5 6 3.6281 -1.0864 0.0011 6 6 4.2030 -2.3078 -0.7201 7 6 5.7314 -2.2070 -0.7475 8 7 6.2187 -2.0333 0.6275 9 6 7.1564 -2.8589 1.1333 10 8 7.6732 -3.6995 0.4229 11 7 7.5253 -2.7491 2.4249 12 6 8.4650 -3.7129 3.0029 13 1 9.1949 -4.0059 2.2482 14 6 9.1766 -3.0817 4.1716 15 1 8.9518 -2.0642 4.4553 16 6 10.1149 -3.8031 4.8789 17 7 10.3884 -5.0424 4.5338 18 14 10.9976 -3.0205 6.3272 19 1 10.5128 -1.6286 6.5089 20 1 10.7216 -3.8048 7.5577 21 1 12.4595 -3.0060 6.0669 22 6 7.6994 -4.9491 3.4791 23 9 7.0387 -5.5351 2.3940 24 9 8.5968 -5.8692 4.0315 25 9 6.7625 -4.5728 4.4476 26 6 5.6600 -0.9463 1.4431 27 6 4.1365 -1.0579 1.4443 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8901 -0.5138 31 1 3.9444 -0.1790 -0.5133 32 1 3.8221 -2.3403 -1.7408 33 1 3.9077 -3.2147 -0.1924 34 1 6.0303 -1.3507 -1.3520 35 1 6.1522 -3.1186 -1.1720 36 1 7.1684 -2.0318 2.9718 37 1 11.0488 -5.5498 5.0311 38 1 6.0317 -1.0278 2.4646 39 1 5.9529 0.0149 1.0209 40 1 3.7081 -0.2007 1.9639 41 1 3.8412 -1.9760 1.9521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:39 Heat of formation + Delta-G solvation = -267.590837 kcal Electronic energy + Delta-G solvation = -31154.646071 eV Core-core repulsion = 26233.868752 eV Total energy + Delta-G solvation = -4920.777319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.41576 -48.05285 -47.72431 -41.82484 -41.14588 -38.73872 -37.16912 -36.52326 -34.60901 -33.29829 -32.26036 -30.97497 -29.97247 -26.62451 -26.16671 -24.52944 -23.59447 -22.42293 -21.80551 -20.88178 -19.83342 -18.93180 -18.79825 -18.68503 -18.59546 -17.71853 -17.34633 -17.10522 -16.96911 -16.54895 -16.20878 -15.48905 -15.38594 -15.06315 -14.97554 -14.76902 -14.63995 -14.49531 -14.44834 -14.29230 -14.21318 -14.02367 -13.90073 -13.52013 -13.36583 -13.25730 -13.05051 -12.85365 -12.74403 -12.67946 -12.63042 -12.36111 -12.17945 -11.77256 -11.61548 -11.53869 -11.35780 -11.12450 -10.69783 -10.21148 -9.60359 -8.21057 -6.51969 1.20403 1.45870 1.47173 1.55702 1.62525 1.72553 2.10418 2.36345 2.54360 2.89510 2.94974 3.55097 3.58195 3.70404 3.78641 3.86529 3.89949 3.96922 4.16156 4.20782 4.30056 4.40470 4.49860 4.59219 4.63219 4.68854 4.73079 4.78710 4.92688 4.95797 4.97855 5.13609 5.41900 5.44547 5.56438 5.59257 5.65590 5.93980 6.53193 6.74939 6.99348 7.18440 7.57599 8.71907 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.003072 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.405269 B = 9112.003644 C = 9477.921044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.454 3.546 3 O -0.551 6.551 4 O -0.355 6.355 5 C 0.092 3.908 6 C -0.120 4.120 7 C 0.131 3.869 8 N -0.629 5.629 9 C 0.700 3.300 10 O -0.625 6.625 11 N -0.721 5.721 12 C 0.269 3.731 13 H 0.047 0.953 14 C -0.561 4.561 15 H 0.091 0.909 16 C 0.015 3.985 17 N -0.874 5.874 18 Si 0.984 3.016 19 H -0.255 1.255 20 H -0.281 1.281 21 H -0.278 1.278 22 C 0.413 3.587 23 F -0.220 7.220 24 F -0.150 7.150 25 F -0.203 7.203 26 C 0.114 3.886 27 C -0.144 4.144 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.407 0.593 37 H 0.269 0.731 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.524 10.472 -7.019 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.300 3.700 3 O -0.442 6.442 4 O -0.272 6.272 5 C 0.038 3.962 6 C -0.159 4.159 7 C 0.009 3.991 8 N -0.367 5.367 9 C 0.401 3.599 10 O -0.505 6.505 11 N -0.377 5.377 12 C 0.161 3.839 13 H 0.065 0.935 14 C -0.597 4.597 15 H 0.109 0.891 16 C -0.190 4.190 17 N -0.508 5.508 18 Si 0.807 3.193 19 H -0.179 1.179 20 H -0.207 1.207 21 H -0.203 1.203 22 C 0.357 3.643 23 F -0.202 7.202 24 F -0.131 7.131 25 F -0.185 7.185 26 C -0.009 4.009 27 C -0.182 4.182 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.246 0.754 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.846 9.949 -7.485 20.947 hybrid contribution 0.433 -0.085 1.066 1.154 sum -16.412 9.864 -6.419 20.196 Atomic orbital electron populations 1.21766 0.83663 1.07178 1.07258 1.24797 0.93735 0.80975 0.70510 1.90673 1.71872 1.34106 1.47511 1.86606 1.22066 1.35245 1.83303 1.22697 0.76298 1.00305 0.96924 1.21960 0.94249 0.97042 1.02616 1.21528 0.92487 1.03882 0.81235 1.47353 1.41230 1.32623 1.15456 1.16124 0.80231 0.81293 0.82204 1.90866 1.59252 1.40561 1.59826 1.45191 1.49313 1.33291 1.09908 1.19194 0.85883 0.83339 0.95442 0.93481 1.21235 1.23236 1.01308 1.13964 0.89077 1.25996 0.97199 0.95009 1.00807 1.70544 1.30258 1.09371 1.40636 0.85104 0.77818 0.78988 0.77362 1.17861 1.20653 1.20331 1.23350 0.77754 0.88741 0.74489 1.93054 1.83280 1.87009 1.56856 1.93376 1.65097 1.69246 1.85400 1.92982 1.68106 1.91760 1.65666 1.21655 0.92518 0.90360 0.96346 1.22193 0.95632 1.03809 0.96593 0.86095 0.86922 0.87070 0.89297 0.87480 0.91497 0.89177 0.89783 0.75426 0.92143 0.89309 0.88789 0.89211 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 10.41 71.24 0.74 -0.29 16 2 C 0.45 7.89 8.04 71.24 0.57 8.47 16 3 O -0.55 -13.30 16.32 21.97 0.36 -12.94 16 4 O -0.36 -6.76 9.88 -51.36 -0.51 -7.27 16 5 C 0.09 1.83 2.42 30.62 0.07 1.91 16 6 C -0.12 -2.40 5.74 30.68 0.18 -2.22 16 7 C 0.13 3.20 6.42 86.37 0.55 3.76 16 8 N -0.63 -18.64 2.98 -837.76 -2.50 -21.14 16 9 C 0.70 28.55 7.74 179.05 1.39 29.93 16 10 O -0.62 -30.82 14.60 -3.99 -0.06 -30.88 16 11 N -0.72 -29.98 4.90 -461.41 -2.26 -32.24 16 12 C 0.27 13.70 2.23 44.25 0.10 13.80 16 13 H 0.05 2.78 7.51 -2.39 -0.02 2.76 16 14 C -0.56 -28.43 8.46 25.60 0.22 -28.21 16 15 H 0.09 4.26 7.74 -2.91 -0.02 4.23 16 16 C 0.02 0.79 5.20 84.65 0.44 1.23 16 17 N -0.87 -48.59 9.50 21.45 0.20 -48.39 16 18 Si 0.98 40.50 29.54 68.60 2.03 42.53 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 22 C 0.41 21.65 2.81 71.98 0.20 21.85 16 23 F -0.22 -11.53 15.88 44.97 0.71 -10.82 16 24 F -0.15 -8.53 12.91 44.97 0.58 -7.95 16 25 F -0.20 -10.01 16.94 44.97 0.76 -9.25 16 26 C 0.11 2.56 6.40 86.22 0.55 3.11 16 27 C -0.14 -2.96 5.70 30.53 0.17 -2.79 16 28 H 0.12 0.52 8.14 -2.38 -0.02 0.51 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.44 8.14 -2.38 -0.02 0.43 16 31 H 0.09 1.78 7.16 -2.39 -0.02 1.76 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.44 7.03 -2.39 -0.02 2.42 16 36 H 0.41 14.34 6.00 -92.71 -0.56 13.78 16 37 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.09 1.99 5.57 -2.39 -0.01 1.98 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -71.64 348.92 5.05 -66.60 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.53 Total: 21.19 kcal Atomic # 6 Polarization: 45.35 SS G_CDS: 5.19 Total: 50.54 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -4.55 Total: -101.76 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.21 Total: -51.09 kcal Atomic # 9 Polarization: -30.07 SS G_CDS: 2.06 Total: -28.01 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -71.64 5.05 -66.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.992 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds