Wall clock time and date at job start Tue Mar 31 2020 20:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20828 * 120.00018 * 2 1 4 4 O 1.34230 * 119.99989 * 180.02562 * 2 1 3 5 5 C 1.45202 * 117.00018 * 180.02562 * 4 2 1 6 6 C 1.53044 * 109.45896 * 209.99932 * 5 4 2 7 7 C 1.53190 * 109.31158 * 178.63152 * 6 5 4 8 8 N 1.46925 * 108.77986 * 54.63031 * 7 6 5 9 9 C 1.34773 * 120.62807 * 126.36916 * 8 7 6 10 10 O 1.21593 * 120.00007 * 185.36213 * 9 8 7 11 11 N 1.34771 * 120.00144 * 5.35921 * 9 8 7 12 12 C 1.46503 * 119.99874 * 185.33168 * 11 9 8 13 13 H 1.09000 * 109.47237 * 324.99369 * 12 11 9 14 14 C 1.50700 * 109.47085 * 205.00105 * 12 11 9 15 15 H 1.08005 * 120.00237 * 354.14164 * 14 12 11 16 16 C 1.37883 * 120.00160 * 174.14322 * 14 12 11 17 17 N 1.31507 * 119.99583 * 332.70387 * 16 14 12 18 18 Si 1.86800 * 120.00088 * 152.70453 * 16 14 12 19 19 H 1.48489 * 109.47296 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47084 * 300.00108 * 18 16 14 21 21 H 1.48505 * 109.47078 * 59.99478 * 18 16 14 22 22 C 1.52994 * 109.47368 * 85.00196 * 12 11 9 23 23 F 1.39902 * 109.47184 * 176.93493 * 22 12 11 24 24 F 1.39904 * 109.46897 * 296.93261 * 22 12 11 25 25 F 1.39897 * 109.47497 * 56.92894 * 22 12 11 26 26 C 1.46928 * 118.73854 * 306.64692 * 8 7 6 27 27 C 1.52758 * 109.00802 * 53.30860 * 26 8 7 28 28 H 1.08999 * 109.47447 * 239.99741 * 1 2 3 29 29 H 1.09000 * 109.47186 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47158 * 119.99744 * 1 2 3 31 31 H 1.08991 * 109.46133 * 329.97114 * 5 4 2 32 32 H 1.08991 * 109.49678 * 58.67683 * 6 5 4 33 33 H 1.09002 * 109.52103 * 298.59665 * 6 5 4 34 34 H 1.09005 * 109.58245 * 294.84729 * 7 6 5 35 35 H 1.08998 * 109.70256 * 174.49701 * 7 6 5 36 36 H 0.96996 * 120.00216 * 5.32893 * 11 9 8 37 37 H 0.97000 * 120.00563 * 354.48407 * 17 16 14 38 38 H 1.08996 * 109.58589 * 173.14088 * 26 8 7 39 39 H 1.09002 * 109.58568 * 293.56763 * 26 8 7 40 40 H 1.09004 * 109.56787 * 185.55314 * 27 26 8 41 41 H 1.09000 * 109.39222 * 65.51225 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6282 -1.0865 0.0001 6 6 4.2030 -2.3073 -0.7220 7 6 5.7313 -2.2066 -0.7493 8 7 6.2187 -2.0341 0.6260 9 6 7.1563 -2.8601 1.1309 10 8 7.4809 -2.7695 2.2991 11 7 7.7341 -3.7867 0.3409 12 6 8.6663 -4.7602 0.9149 13 1 9.2385 -4.2882 1.7135 14 6 9.6072 -5.2471 -0.1569 15 1 9.4611 -4.9427 -1.1828 16 6 10.6545 -6.0814 0.1722 17 7 11.1741 -6.0394 1.3795 18 14 11.3353 -7.2710 -1.0970 19 1 12.4494 -8.0491 -0.4986 20 1 10.2606 -8.1989 -1.5322 21 1 11.8372 -6.5103 -2.2695 22 6 7.8815 -5.9452 1.4813 23 9 8.7744 -6.9067 1.9665 24 9 7.0591 -5.5043 2.5237 25 9 7.0933 -6.5080 0.4718 26 6 5.6599 -0.9478 1.4424 27 6 4.1364 -1.0592 1.4434 28 1 -0.3634 -0.5139 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 3.9444 -0.1787 -0.5134 32 1 3.8221 -2.3389 -1.7427 33 1 3.9075 -3.2147 -0.1951 34 1 6.0303 -1.3497 -1.3531 35 1 6.1521 -3.1178 -1.1746 36 1 7.5327 -3.8089 -0.6077 37 1 10.8757 -5.3683 2.0130 38 1 6.0316 -1.0300 2.4637 39 1 5.9530 0.0138 1.0210 40 1 3.7081 -0.2026 1.9638 41 1 3.8411 -1.9778 1.9505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932911423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:42 Heat of formation + Delta-G solvation = -269.053266 kcal Electronic energy + Delta-G solvation = -31096.660403 eV Core-core repulsion = 26175.819669 eV Total energy + Delta-G solvation = -4920.840735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.76953 -46.32562 -46.21948 -40.93973 -39.93140 -37.67851 -36.20908 -34.94299 -33.02629 -32.12351 -31.24908 -30.41430 -28.08926 -25.15668 -24.46976 -23.55068 -22.10551 -21.46429 -20.82690 -19.48012 -18.59804 -17.95018 -17.47120 -17.20736 -17.03001 -16.55412 -16.33861 -16.25641 -15.54768 -15.02243 -14.48758 -14.30745 -14.00130 -13.90120 -13.73966 -13.49465 -13.26366 -13.21103 -12.99964 -12.82194 -12.81470 -12.75600 -12.55122 -12.48715 -12.45496 -12.42273 -11.96309 -11.75253 -11.48719 -11.32723 -11.06211 -10.95156 -10.79219 -10.76822 -10.42932 -10.21742 -9.67710 -9.55215 -8.71332 -8.44870 -8.30776 -6.79831 -4.51234 1.90467 2.39429 2.85789 3.30018 3.37177 3.54212 3.56603 4.09075 4.25439 4.30996 4.33938 4.42903 4.49048 4.76153 4.80506 4.85693 4.87520 4.88472 5.06482 5.18676 5.23682 5.37292 5.42878 5.46526 5.55184 5.58958 5.59414 5.70311 5.81505 5.85208 5.96115 6.29249 6.49200 6.64477 7.01163 7.14086 7.45743 7.46192 8.08570 8.35946 8.44784 8.99895 9.17375 10.55123 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002913 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.709170 B = 9609.309961 C = 9723.742175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.457 3.543 3 O -0.515 6.515 4 O -0.353 6.353 5 C 0.092 3.908 6 C -0.130 4.130 7 C 0.116 3.884 8 N -0.636 5.636 9 C 0.704 3.296 10 O -0.582 6.582 11 N -0.719 5.719 12 C 0.253 3.747 13 H 0.080 0.920 14 C -0.649 4.649 15 H 0.073 0.927 16 C 0.052 3.948 17 N -0.846 5.846 18 Si 1.060 2.940 19 H -0.279 1.279 20 H -0.281 1.281 21 H -0.284 1.284 22 C 0.413 3.587 23 F -0.176 7.176 24 F -0.207 7.207 25 F -0.198 7.198 26 C 0.136 3.864 27 C -0.150 4.150 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.580 8.998 -5.599 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.301 3.699 3 O -0.403 6.403 4 O -0.270 6.270 5 C 0.037 3.963 6 C -0.169 4.169 7 C -0.008 4.008 8 N -0.375 5.375 9 C 0.406 3.594 10 O -0.459 6.459 11 N -0.374 5.374 12 C 0.145 3.855 13 H 0.098 0.902 14 C -0.684 4.684 15 H 0.091 0.909 16 C -0.162 4.162 17 N -0.474 5.474 18 Si 0.886 3.114 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.210 1.210 22 C 0.357 3.643 23 F -0.157 7.157 24 F -0.188 7.188 25 F -0.180 7.180 26 C 0.012 3.988 27 C -0.188 4.188 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.003 8.103 -4.878 18.589 hybrid contribution -1.517 1.017 -0.156 1.833 sum -17.521 9.120 -5.034 20.383 Atomic orbital electron populations 1.21648 0.87273 1.05819 1.05761 1.23853 0.92194 0.81864 0.72006 1.90691 1.70930 1.33087 1.45588 1.86569 1.22439 1.34551 1.83400 1.22777 0.75692 1.00260 0.97526 1.22025 0.95350 0.97969 1.01539 1.21563 0.92566 1.02897 0.83802 1.47282 1.42412 1.33802 1.14031 1.15970 0.79238 0.79198 0.85016 1.90902 1.66402 1.73111 1.15478 1.45253 1.47930 1.33000 1.11189 1.19562 0.85687 0.81963 0.98251 0.90246 1.21562 1.14964 1.37684 0.94234 0.90924 1.25922 0.93099 0.97331 0.99827 1.70740 1.36687 1.33219 1.06765 0.83704 0.76650 0.76337 0.74737 1.20356 1.20659 1.20962 1.23099 0.78234 0.87927 0.75015 1.93153 1.67817 1.66395 1.88350 1.93096 1.75164 1.89491 1.61087 1.93009 1.76365 1.87321 1.61319 1.21226 0.90843 0.88752 0.97940 1.22290 0.96841 1.03849 0.95836 0.88197 0.88169 0.88240 0.89437 0.89697 0.89914 0.91018 0.89044 0.76753 0.91071 0.87983 0.91632 0.90287 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.43 36.01 0.38 -0.36 16 2 C 0.46 4.41 8.04 36.01 0.29 4.70 16 3 O -0.51 -6.61 16.30 -18.75 -0.31 -6.92 16 4 O -0.35 -3.66 9.88 -39.26 -0.39 -4.05 16 5 C 0.09 0.99 2.42 -26.68 -0.06 0.92 16 6 C -0.13 -1.31 5.74 -26.61 -0.15 -1.47 16 7 C 0.12 1.31 6.35 -3.71 -0.02 1.28 16 8 N -0.64 -9.55 2.98 -178.76 -0.53 -10.08 16 9 C 0.70 14.06 7.82 -86.93 -0.68 13.38 16 10 O -0.58 -13.81 14.58 5.28 0.08 -13.73 16 11 N -0.72 -14.66 4.80 -59.81 -0.29 -14.95 16 12 C 0.25 6.18 2.01 -69.08 -0.14 6.04 16 13 H 0.08 2.17 6.39 -51.93 -0.33 1.84 16 14 C -0.65 -16.53 8.32 -34.44 -0.29 -16.82 16 15 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 16 C 0.05 1.38 4.25 -17.82 -0.08 1.30 16 17 N -0.85 -23.73 12.31 55.43 0.68 -23.05 16 18 Si 1.06 23.24 29.98 -169.99 -5.10 18.15 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 C 0.41 10.25 2.82 37.15 0.10 10.36 16 23 F -0.18 -4.67 14.69 2.25 0.03 -4.64 16 24 F -0.21 -5.11 15.99 2.25 0.04 -5.07 16 25 F -0.20 -4.66 16.97 2.25 0.04 -4.62 16 26 C 0.14 1.79 6.41 -3.93 -0.03 1.76 16 27 C -0.15 -1.72 5.70 -26.83 -0.15 -1.88 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.96 7.15 -51.93 -0.37 0.59 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.03 5.74 -51.93 -0.30 0.73 16 36 H 0.40 6.98 6.12 -40.82 -0.25 6.73 16 37 H 0.28 7.94 7.23 -40.82 -0.30 7.64 16 38 H 0.10 1.53 6.99 -51.93 -0.36 1.16 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -32.72 350.86 -6.21 -38.93 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.92 Total: 5.52 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: -0.83 Total: 19.23 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.14 Total: -48.08 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.62 Total: -24.70 kcal Atomic # 9 Polarization: -14.44 SS G_CDS: 0.11 Total: -14.33 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.10 Total: 18.15 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.72 -6.21 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.124 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds