Wall clock time and date at job start Tue Mar 31 2020 20:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20828 * 120.00018 * 2 1 4 4 O 1.34230 * 119.99989 * 180.02562 * 2 1 3 5 5 C 1.45202 * 117.00018 * 180.02562 * 4 2 1 6 6 C 1.53044 * 109.45896 * 209.99932 * 5 4 2 7 7 C 1.53190 * 109.31158 * 178.63152 * 6 5 4 8 8 N 1.46925 * 108.77986 * 54.63031 * 7 6 5 9 9 C 1.34773 * 120.62807 * 126.36916 * 8 7 6 10 10 O 1.21593 * 120.00007 * 185.36213 * 9 8 7 11 11 N 1.34771 * 120.00144 * 5.35921 * 9 8 7 12 12 C 1.46503 * 119.99874 * 185.33168 * 11 9 8 13 13 H 1.09000 * 109.47237 * 324.99369 * 12 11 9 14 14 C 1.50700 * 109.47085 * 205.00105 * 12 11 9 15 15 H 1.08005 * 120.00237 * 354.14164 * 14 12 11 16 16 C 1.37883 * 120.00160 * 174.14322 * 14 12 11 17 17 N 1.31507 * 119.99583 * 332.70387 * 16 14 12 18 18 Si 1.86800 * 120.00088 * 152.70453 * 16 14 12 19 19 H 1.48489 * 109.47296 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47084 * 300.00108 * 18 16 14 21 21 H 1.48505 * 109.47078 * 59.99478 * 18 16 14 22 22 C 1.52994 * 109.47368 * 85.00196 * 12 11 9 23 23 F 1.39902 * 109.47184 * 176.93493 * 22 12 11 24 24 F 1.39904 * 109.46897 * 296.93261 * 22 12 11 25 25 F 1.39897 * 109.47497 * 56.92894 * 22 12 11 26 26 C 1.46928 * 118.73854 * 306.64692 * 8 7 6 27 27 C 1.52758 * 109.00802 * 53.30860 * 26 8 7 28 28 H 1.08999 * 109.47447 * 239.99741 * 1 2 3 29 29 H 1.09000 * 109.47186 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47158 * 119.99744 * 1 2 3 31 31 H 1.08991 * 109.46133 * 329.97114 * 5 4 2 32 32 H 1.08991 * 109.49678 * 58.67683 * 6 5 4 33 33 H 1.09002 * 109.52103 * 298.59665 * 6 5 4 34 34 H 1.09005 * 109.58245 * 294.84729 * 7 6 5 35 35 H 1.08998 * 109.70256 * 174.49701 * 7 6 5 36 36 H 0.96996 * 120.00216 * 5.32893 * 11 9 8 37 37 H 0.97000 * 120.00563 * 354.48407 * 17 16 14 38 38 H 1.08996 * 109.58589 * 173.14088 * 26 8 7 39 39 H 1.09002 * 109.58568 * 293.56763 * 26 8 7 40 40 H 1.09004 * 109.56787 * 185.55314 * 27 26 8 41 41 H 1.09000 * 109.39222 * 65.51225 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6282 -1.0865 0.0001 6 6 4.2030 -2.3073 -0.7220 7 6 5.7313 -2.2066 -0.7493 8 7 6.2187 -2.0341 0.6260 9 6 7.1563 -2.8601 1.1309 10 8 7.4809 -2.7695 2.2991 11 7 7.7341 -3.7867 0.3409 12 6 8.6663 -4.7602 0.9149 13 1 9.2385 -4.2882 1.7135 14 6 9.6072 -5.2471 -0.1569 15 1 9.4611 -4.9427 -1.1828 16 6 10.6545 -6.0814 0.1722 17 7 11.1741 -6.0394 1.3795 18 14 11.3353 -7.2710 -1.0970 19 1 12.4494 -8.0491 -0.4986 20 1 10.2606 -8.1989 -1.5322 21 1 11.8372 -6.5103 -2.2695 22 6 7.8815 -5.9452 1.4813 23 9 8.7744 -6.9067 1.9665 24 9 7.0591 -5.5043 2.5237 25 9 7.0933 -6.5080 0.4718 26 6 5.6599 -0.9478 1.4424 27 6 4.1364 -1.0592 1.4434 28 1 -0.3634 -0.5139 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 3.9444 -0.1787 -0.5134 32 1 3.8221 -2.3389 -1.7427 33 1 3.9075 -3.2147 -0.1951 34 1 6.0303 -1.3497 -1.3531 35 1 6.1521 -3.1178 -1.1746 36 1 7.5327 -3.8089 -0.6077 37 1 10.8757 -5.3683 2.0130 38 1 6.0316 -1.0300 2.4637 39 1 5.9530 0.0138 1.0210 40 1 3.7081 -0.2026 1.9638 41 1 3.8411 -1.9778 1.9505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:42 Heat of formation + Delta-G solvation = -289.670172 kcal Electronic energy + Delta-G solvation = -31097.554419 eV Core-core repulsion = 26175.819669 eV Total energy + Delta-G solvation = -4921.734751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.79015 -48.32830 -48.26355 -41.87512 -41.22026 -38.81263 -37.24406 -36.73254 -34.76593 -33.32894 -32.30553 -30.99688 -29.85141 -26.50040 -26.25028 -24.62222 -23.65742 -22.62985 -21.84800 -20.94833 -20.07505 -19.31530 -19.14561 -19.02284 -18.70059 -18.10350 -17.29974 -17.21648 -16.98075 -16.34972 -15.83932 -15.62479 -15.47457 -15.25408 -15.13305 -14.93435 -14.80175 -14.73831 -14.57168 -14.52120 -14.48946 -14.38004 -14.31479 -13.65087 -13.42217 -13.29139 -13.21106 -13.00412 -12.90549 -12.66174 -12.51575 -12.40638 -11.92064 -11.86741 -11.60653 -11.46825 -11.40885 -11.21428 -10.47079 -10.33065 -9.69447 -8.87292 -6.58630 1.18175 1.43781 1.57821 1.62851 1.68658 1.84790 1.95890 2.23889 2.50684 2.79156 2.88281 3.42824 3.49236 3.56181 3.59142 3.66602 3.73212 3.87570 3.91759 4.15543 4.23957 4.34566 4.48023 4.54353 4.58523 4.60401 4.65254 4.69939 4.79750 4.92620 4.93629 5.10498 5.29144 5.30757 5.46913 5.54187 5.83233 6.05232 6.28770 6.72000 6.89161 7.15445 7.46916 8.46268 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002913 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.709170 B = 9609.309961 C = 9723.742175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.453 3.547 3 O -0.551 6.551 4 O -0.355 6.355 5 C 0.093 3.907 6 C -0.122 4.122 7 C 0.109 3.891 8 N -0.627 5.627 9 C 0.699 3.301 10 O -0.627 6.627 11 N -0.713 5.713 12 C 0.259 3.741 13 H 0.043 0.957 14 C -0.652 4.652 15 H 0.086 0.914 16 C 0.009 3.991 17 N -0.874 5.874 18 Si 1.104 2.896 19 H -0.286 1.286 20 H -0.270 1.270 21 H -0.257 1.257 22 C 0.414 3.586 23 F -0.188 7.188 24 F -0.208 7.208 25 F -0.188 7.188 26 C 0.134 3.866 27 C -0.140 4.140 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.411 0.589 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.417 9.262 -8.187 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.299 3.701 3 O -0.442 6.442 4 O -0.272 6.272 5 C 0.038 3.962 6 C -0.160 4.160 7 C -0.014 4.014 8 N -0.365 5.365 9 C 0.400 3.600 10 O -0.508 6.508 11 N -0.369 5.369 12 C 0.150 3.850 13 H 0.061 0.939 14 C -0.687 4.687 15 H 0.104 0.896 16 C -0.199 4.199 17 N -0.503 5.503 18 Si 0.924 3.076 19 H -0.211 1.211 20 H -0.195 1.195 21 H -0.182 1.182 22 C 0.358 3.642 23 F -0.169 7.169 24 F -0.190 7.190 25 F -0.169 7.169 26 C 0.011 3.989 27 C -0.179 4.179 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.250 0.750 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.910 8.404 -7.522 21.165 hybrid contribution -1.054 1.020 0.668 1.612 sum -18.964 9.425 -6.854 22.259 Atomic orbital electron populations 1.21788 0.83566 1.06989 1.07513 1.24819 0.93771 0.80970 0.70514 1.90678 1.71933 1.34151 1.47439 1.86596 1.21999 1.35172 1.83385 1.22698 0.76353 1.00603 0.96561 1.21958 0.94164 0.96963 1.02928 1.21891 0.93490 1.04270 0.81703 1.47334 1.40734 1.32738 1.15666 1.16157 0.79896 0.79520 0.84413 1.90870 1.68015 1.74394 1.17516 1.44996 1.47508 1.32520 1.11912 1.19154 0.86271 0.82322 0.97213 0.93887 1.21836 1.14779 1.37306 0.94827 0.89615 1.27306 0.93495 0.98584 1.00564 1.70863 1.38047 1.33698 1.07697 0.83152 0.76220 0.74844 0.73388 1.21111 1.19467 1.18159 1.23061 0.78223 0.87769 0.75120 1.93127 1.68348 1.66895 1.88574 1.93091 1.75120 1.89497 1.61247 1.93018 1.76007 1.87159 1.60753 1.21337 0.91861 0.88960 0.96731 1.22169 0.95454 1.03397 0.96870 0.86544 0.87370 0.86078 0.89252 0.86881 0.91228 0.88248 0.88814 0.75030 0.92833 0.90338 0.89476 0.89677 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 10.43 71.24 0.74 -0.25 16 2 C 0.45 7.83 8.04 71.24 0.57 8.40 16 3 O -0.55 -13.39 16.30 21.96 0.36 -13.03 16 4 O -0.35 -6.60 9.88 -51.42 -0.51 -7.11 16 5 C 0.09 1.80 2.42 30.62 0.07 1.87 16 6 C -0.12 -2.14 5.74 30.67 0.18 -1.97 16 7 C 0.11 2.19 6.35 86.36 0.55 2.74 16 8 N -0.63 -18.32 2.98 -837.75 -2.50 -20.81 16 9 C 0.70 28.13 7.82 179.06 1.40 29.52 16 10 O -0.63 -30.87 14.58 -4.01 -0.06 -30.93 16 11 N -0.71 -28.93 4.80 -461.42 -2.22 -31.15 16 12 C 0.26 12.86 2.01 44.24 0.09 12.95 16 13 H 0.04 2.48 6.39 -2.39 -0.02 2.46 16 14 C -0.65 -32.91 8.32 25.60 0.21 -32.70 16 15 H 0.09 4.03 7.86 -2.91 -0.02 4.01 16 16 C 0.01 0.45 4.25 84.66 0.36 0.81 16 17 N -0.87 -50.02 12.31 21.45 0.26 -49.75 16 18 Si 1.10 45.63 29.98 68.60 2.06 47.69 16 19 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 22 C 0.41 20.74 2.82 71.98 0.20 20.94 16 23 F -0.19 -10.15 14.69 44.97 0.66 -9.49 16 24 F -0.21 -10.46 15.99 44.97 0.72 -9.74 16 25 F -0.19 -8.64 16.97 44.97 0.76 -7.88 16 26 C 0.13 3.47 6.41 86.22 0.55 4.02 16 27 C -0.14 -3.12 5.70 30.53 0.17 -2.95 16 28 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.09 1.75 7.15 -2.39 -0.02 1.74 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.09 1.87 5.74 -2.39 -0.01 1.86 16 36 H 0.41 13.90 6.12 -92.71 -0.57 13.33 16 37 H 0.26 15.59 7.23 -92.71 -0.67 14.92 16 38 H 0.08 2.43 6.99 -2.39 -0.02 2.41 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -72.38 350.86 5.27 -67.11 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.62 Total: 21.70 kcal Atomic # 6 Polarization: 38.29 SS G_CDS: 5.11 Total: 43.40 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -4.45 Total: -101.71 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.21 Total: -51.07 kcal Atomic # 9 Polarization: -29.26 SS G_CDS: 2.14 Total: -27.12 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.06 Total: 47.69 kcal Total: -72.38 5.27 -67.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.557 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds