Wall clock time and date at job start Tue Mar 31 2020 20:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21289 * 119.99682 * 2 1 4 4 N 1.34772 * 120.00429 * 179.97438 * 2 1 3 5 5 C 1.47158 * 120.98262 * 0.02562 * 4 2 1 6 6 C 1.53293 * 108.38343 * 129.47964 * 5 4 2 7 7 O 1.42964 * 109.22275 * 52.30865 * 6 5 4 8 8 C 1.42964 * 114.16565 * 297.41412 * 7 6 5 9 9 H 1.08998 * 109.51016 * 302.65918 * 8 7 6 10 10 C 1.50696 * 109.51369 * 182.50248 * 8 7 6 11 11 O 1.21284 * 120.00143 * 347.52306 * 10 8 7 12 12 N 1.34770 * 120.00263 * 167.52119 * 10 8 7 13 13 C 1.46508 * 119.99906 * 4.22555 * 12 10 8 14 14 C 1.50704 * 109.46938 * 95.77311 * 13 12 10 15 15 H 1.08001 * 119.99878 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99779 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00235 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47008 * 90.00163 * 18 16 14 20 20 H 1.48498 * 109.46944 * 210.00144 * 18 16 14 21 21 H 1.48498 * 109.47071 * 329.99906 * 18 16 14 22 22 C 1.46503 * 120.00399 * 184.22701 * 12 10 8 23 23 C 1.52991 * 109.47106 * 90.23543 * 22 12 10 24 24 F 1.39911 * 109.47419 * 64.21100 * 23 22 12 25 25 F 1.39903 * 109.47340 * 184.20808 * 23 22 12 26 26 F 1.39897 * 109.47506 * 304.20939 * 23 22 12 27 27 C 1.47154 * 120.98477 * 180.02562 * 4 2 1 28 28 H 1.08995 * 109.47001 * 240.00189 * 1 2 3 29 29 H 1.08999 * 109.46938 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46451 * 120.00436 * 1 2 3 31 31 H 1.09003 * 109.67729 * 9.75847 * 5 4 2 32 32 H 1.08996 * 109.71128 * 249.22695 * 5 4 2 33 33 H 1.08999 * 109.51725 * 292.37972 * 6 5 4 34 34 H 1.09005 * 109.50834 * 172.22500 * 6 5 4 35 35 H 1.08997 * 109.47482 * 215.77544 * 13 12 10 36 36 H 1.09003 * 109.46679 * 335.78010 * 13 12 10 37 37 H 0.97000 * 119.99445 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47194 * 210.23750 * 22 12 10 39 39 H 1.08994 * 109.46836 * 330.23568 * 22 12 10 40 40 H 1.08997 * 109.68607 * 110.79573 * 27 4 2 41 41 H 1.09001 * 109.68203 * 350.23458 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4672 -2.4540 0.0005 6 6 2.0420 -3.3256 -1.1219 7 8 3.4640 -3.3884 -0.9878 8 6 4.1207 -2.1255 -1.1209 9 1 3.8724 -1.6861 -2.0870 10 6 5.6118 -2.3208 -1.0237 11 8 6.0608 -3.3783 -0.6351 12 7 6.4463 -1.3204 -1.3687 13 6 5.9051 -0.0133 -1.7494 14 6 5.9100 0.9008 -0.5513 15 1 6.2798 0.5440 0.3987 16 6 5.4435 2.1929 -0.6680 17 7 4.9937 2.6276 -1.8249 18 14 5.4503 3.3262 0.8169 19 1 6.7395 4.0609 0.8730 20 1 4.3320 4.2967 0.7040 21 1 5.2846 2.5219 2.0542 22 6 7.8948 -1.5398 -1.3630 23 6 8.3408 -2.0362 -2.7397 24 9 8.1056 -1.0399 -3.6934 25 9 9.7067 -2.3371 -2.7070 26 9 7.6182 -3.1853 -3.0778 27 6 3.6523 -1.1923 0.0011 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 0.4047 -2.2844 -0.1739 32 1 1.6068 -2.9518 0.9601 33 1 1.7862 -2.8906 -2.0880 34 1 1.6251 -4.3304 -1.0522 35 1 6.5202 0.4189 -2.5387 36 1 4.8835 -0.1342 -2.1099 37 1 4.6651 3.5366 -1.9069 38 1 8.4032 -0.6038 -1.1319 39 1 8.1463 -2.2856 -0.6089 40 1 4.0128 -1.5627 0.9607 41 1 4.0367 -0.1873 -0.1731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933810233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:29 Heat of formation + Delta-G solvation = -252.896751 kcal Electronic energy + Delta-G solvation = -32180.713729 eV Core-core repulsion = 27260.573593 eV Total energy + Delta-G solvation = -4920.140136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.67069 -47.22607 -47.11601 -40.37365 -39.08367 -37.72012 -35.43525 -34.44705 -32.81227 -31.92905 -29.83189 -29.44584 -27.50215 -26.89126 -24.33990 -23.26783 -23.08280 -22.05238 -19.27127 -18.93672 -18.13595 -18.06816 -17.36639 -16.92990 -16.72834 -16.37290 -16.18112 -15.65771 -15.32514 -15.09940 -14.80889 -14.54279 -14.17401 -14.04920 -13.92167 -13.65471 -13.60062 -13.35378 -13.32630 -13.30244 -13.21401 -12.69766 -12.48696 -12.29253 -12.05386 -11.99738 -11.86473 -11.84440 -11.37312 -11.22232 -10.98602 -10.78309 -10.57575 -10.22132 -9.97504 -9.82444 -9.50860 -9.24822 -8.53306 -8.32449 -8.14732 -6.19992 -4.28750 2.73488 2.93915 3.02798 3.17736 3.28820 3.36879 3.39153 3.40984 4.07085 4.26383 4.38208 4.45840 4.68653 4.74611 4.80294 4.96421 5.02332 5.17407 5.19056 5.24260 5.27949 5.35544 5.45661 5.53164 5.59400 5.69621 5.72642 5.85687 6.07400 6.35755 6.61467 6.66395 6.93303 7.17637 7.27226 7.64544 7.69284 7.90120 7.96426 8.51212 8.54955 8.77234 9.40914 10.87118 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.005995 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.653912 B = 4669.324777 C = 6842.642794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.502 3.498 3 O -0.508 6.508 4 N -0.619 5.619 5 C 0.071 3.929 6 C 0.048 3.952 7 O -0.358 6.358 8 C 0.072 3.928 9 H 0.088 0.912 10 C 0.532 3.468 11 O -0.533 6.533 12 N -0.592 5.592 13 C 0.229 3.771 14 C -0.557 4.557 15 H 0.064 0.936 16 C 0.086 3.914 17 N -0.873 5.873 18 Si 0.901 3.099 19 H -0.283 1.283 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.083 3.917 23 C 0.431 3.569 24 F -0.179 7.179 25 F -0.189 7.189 26 F -0.181 7.181 27 C 0.071 3.929 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.267 0.733 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 -8.536 0.658 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.289 3.711 3 O -0.381 6.381 4 N -0.355 5.355 5 C -0.053 4.053 6 C -0.030 4.030 7 O -0.276 6.276 8 C 0.011 3.989 9 H 0.106 0.894 10 C 0.319 3.681 11 O -0.410 6.410 12 N -0.324 5.324 13 C 0.111 3.889 14 C -0.594 4.594 15 H 0.082 0.918 16 C -0.120 4.120 17 N -0.509 5.509 18 Si 0.729 3.271 19 H -0.209 1.209 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.044 4.044 23 C 0.375 3.625 24 F -0.161 7.161 25 F -0.171 7.171 26 F -0.162 7.162 27 C -0.051 4.051 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.508 -8.495 0.766 10.154 hybrid contribution -0.246 0.747 0.372 0.870 sum -5.755 -7.749 1.137 9.718 Atomic orbital electron populations 1.21924 0.92389 1.05197 1.03499 1.20783 0.90293 0.83291 0.76684 1.90886 1.70078 1.30155 1.46974 1.48176 1.06930 1.05536 1.74893 1.22427 0.97294 0.85193 1.00365 1.22994 0.81805 1.00831 0.97386 1.88028 1.18026 1.28200 1.93358 1.22193 0.90852 0.85300 1.00565 0.89423 1.19866 0.87700 0.83423 0.77141 1.90653 1.77842 1.26660 1.45802 1.48074 1.03354 1.14629 1.66383 1.19797 0.95470 0.76542 0.97106 1.21251 1.45300 0.96898 0.95993 0.91784 1.24796 0.93622 0.97640 0.95990 1.69873 1.39506 1.17766 1.23772 0.86445 0.77229 0.80574 0.82893 1.20912 1.20924 1.19818 1.22406 0.84978 1.05774 0.91196 1.21541 0.74601 0.75757 0.90585 1.93202 1.94083 1.61120 1.67687 1.93143 1.33452 1.93534 1.96929 1.93191 1.77728 1.51542 1.93776 1.22783 0.79091 1.05943 0.97233 0.89852 0.89124 0.89778 0.88912 0.90618 0.92592 0.87521 0.93630 0.93958 0.92309 0.85308 0.86380 0.91365 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.69 36.01 0.31 -1.52 16 2 C 0.50 8.44 7.82 -10.99 -0.09 8.36 16 3 O -0.51 -11.45 16.56 5.55 0.09 -11.36 16 4 N -0.62 -9.83 3.02 -172.29 -0.52 -10.35 16 5 C 0.07 0.79 6.54 -3.53 -0.02 0.76 16 6 C 0.05 0.57 6.98 37.31 0.26 0.83 16 7 O -0.36 -6.18 9.95 -54.79 -0.55 -6.72 16 8 C 0.07 1.36 2.35 -27.75 -0.07 1.30 16 9 H 0.09 1.66 6.89 -51.93 -0.36 1.31 16 10 C 0.53 10.94 6.47 -10.99 -0.07 10.87 16 11 O -0.53 -11.86 15.78 -14.01 -0.22 -12.08 16 12 N -0.59 -11.88 2.38 -175.06 -0.42 -12.30 16 13 C 0.23 5.19 4.56 -5.19 -0.02 5.16 16 14 C -0.56 -13.71 6.96 -34.44 -0.24 -13.95 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.09 2.25 5.46 -17.82 -0.10 2.15 16 17 N -0.87 -23.86 13.29 55.43 0.74 -23.13 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.08 1.43 5.49 -4.04 -0.02 1.41 16 23 C 0.43 7.40 3.30 37.15 0.12 7.53 16 24 F -0.18 -3.28 16.28 2.25 0.04 -3.25 16 25 F -0.19 -2.98 17.32 2.25 0.04 -2.94 16 26 F -0.18 -3.39 16.34 2.25 0.04 -3.36 16 27 C 0.07 1.37 5.57 -3.55 -0.02 1.35 16 28 H 0.08 0.68 8.02 -51.93 -0.42 0.27 16 29 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 30 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16 31 H 0.09 0.70 6.05 -51.93 -0.31 0.39 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 1.09 7.20 -51.93 -0.37 0.72 16 36 H 0.04 1.01 5.50 -51.93 -0.29 0.73 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.13 2.04 8.07 -51.93 -0.42 1.62 16 39 H 0.12 1.92 7.36 -51.93 -0.38 1.53 16 40 H 0.07 1.32 8.13 -51.93 -0.42 0.89 16 41 H 0.16 3.70 3.35 -51.93 -0.17 3.52 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -32.20 348.88 -5.26 -37.45 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.78 Total: 2.24 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: 0.05 Total: 24.25 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.20 Total: -45.77 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.67 Total: -30.17 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 0.11 Total: -9.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.20 -5.26 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933810233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.443 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds